Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03485 and MMJJ_RS03490 are separated by 84 nucleotides MMJJ_RS03490 and MMJJ_RS03495 are separated by 38 nucleotides MMJJ_RS03495 and MMJJ_RS03500 are separated by 203 nucleotides
MMJJ_RS03485: MMJJ_RS03485 - radical SAM protein, at 653,657 to 655,030
_RS03485
MMJJ_RS03490: MMJJ_RS03490 - ribonuclease VapC, at 655,115 to 655,645
_RS03490
MMJJ_RS03495: MMJJ_RS03495 - hypothetical protein, at 655,684 to 655,932
_RS03495
MMJJ_RS03500: MMJJ_RS03500 - F420-dependent methylenetetrahydromethanopterin dehydrogenase, at 656,136 to 656,969
_RS03500
Position (kb) 655
656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 654.153 kb on - strand, within MMJJ_RS03485 at 654.154 kb on + strand, within MMJJ_RS03485 at 654.164 kb on - strand, within MMJJ_RS03485 at 654.165 kb on + strand, within MMJJ_RS03485 at 654.204 kb on + strand, within MMJJ_RS03485 at 654.207 kb on - strand, within MMJJ_RS03485 at 654.207 kb on - strand, within MMJJ_RS03485 at 654.208 kb on + strand, within MMJJ_RS03485 at 654.401 kb on - strand, within MMJJ_RS03485 at 654.423 kb on + strand, within MMJJ_RS03485 at 654.423 kb on + strand, within MMJJ_RS03485 at 654.441 kb on - strand, within MMJJ_RS03485 at 654.441 kb on - strand, within MMJJ_RS03485 at 654.442 kb on + strand, within MMJJ_RS03485 at 654.442 kb on + strand, within MMJJ_RS03485 at 654.443 kb on - strand, within MMJJ_RS03485 at 654.443 kb on - strand, within MMJJ_RS03485 at 654.444 kb on + strand, within MMJJ_RS03485 at 654.444 kb on + strand, within MMJJ_RS03485 at 654.487 kb on - strand, within MMJJ_RS03485 at 654.487 kb on - strand, within MMJJ_RS03485 at 654.488 kb on + strand, within MMJJ_RS03485 at 654.490 kb on + strand, within MMJJ_RS03485 at 654.546 kb on - strand, within MMJJ_RS03485 at 654.547 kb on + strand, within MMJJ_RS03485 at 654.550 kb on + strand, within MMJJ_RS03485 at 654.608 kb on - strand, within MMJJ_RS03485 at 654.608 kb on - strand, within MMJJ_RS03485 at 654.608 kb on - strand, within MMJJ_RS03485 at 654.609 kb on + strand, within MMJJ_RS03485 at 654.611 kb on + strand, within MMJJ_RS03485 at 654.642 kb on + strand, within MMJJ_RS03485 at 654.677 kb on + strand, within MMJJ_RS03485 at 654.708 kb on - strand, within MMJJ_RS03485 at 654.709 kb on + strand, within MMJJ_RS03485 at 654.709 kb on + strand, within MMJJ_RS03485 at 654.709 kb on + strand, within MMJJ_RS03485 at 654.709 kb on + strand, within MMJJ_RS03485 at 654.711 kb on - strand, within MMJJ_RS03485 at 654.711 kb on - strand, within MMJJ_RS03485 at 654.712 kb on + strand, within MMJJ_RS03485 at 654.733 kb on - strand, within MMJJ_RS03485 at 654.769 kb on - strand, within MMJJ_RS03485 at 654.769 kb on - strand, within MMJJ_RS03485 at 654.817 kb on - strand, within MMJJ_RS03485 at 654.831 kb on + strand, within MMJJ_RS03485 at 654.848 kb on - strand, within MMJJ_RS03485 at 654.869 kb on - strand, within MMJJ_RS03485 at 654.870 kb on + strand, within MMJJ_RS03485 at 654.877 kb on + strand, within MMJJ_RS03485 at 655.007 kb on + strand at 655.048 kb on + strand at 655.053 kb on - strand at 655.054 kb on + strand at 655.054 kb on + strand at 655.054 kb on + strand at 655.057 kb on - strand at 655.057 kb on - strand at 655.063 kb on - strand at 655.066 kb on - strand at 655.066 kb on - strand at 655.066 kb on - strand at 655.067 kb on + strand at 655.067 kb on + strand at 655.067 kb on + strand at 655.067 kb on + strand at 655.070 kb on - strand at 655.070 kb on - strand at 655.070 kb on - strand at 655.071 kb on + strand at 655.071 kb on + strand at 655.077 kb on + strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.078 kb on - strand at 655.079 kb on + strand at 655.079 kb on + strand at 655.079 kb on + strand at 655.079 kb on + strand at 655.079 kb on + strand at 655.081 kb on - strand at 655.081 kb on - strand at 655.081 kb on - strand at 655.081 kb on - strand at 655.082 kb on + strand at 655.082 kb on + strand at 655.082 kb on + strand at 655.083 kb on - strand at 655.083 kb on - strand at 655.083 kb on - strand at 655.084 kb on + strand at 655.084 kb on + strand at 655.084 kb on + strand at 655.084 kb on + strand at 655.087 kb on - strand at 655.087 kb on - strand at 655.087 kb on - strand at 655.087 kb on - strand at 655.087 kb on - strand at 655.087 kb on - strand at 655.088 kb on + strand at 655.088 kb on + strand at 655.088 kb on + strand at 655.088 kb on + strand at 655.088 kb on + strand at 655.088 kb on + strand at 655.089 kb on - strand at 655.089 kb on - strand at 655.089 kb on - strand at 655.090 kb on + strand at 655.090 kb on + strand at 655.090 kb on + strand at 655.098 kb on + strand at 655.101 kb on - strand at 655.146 kb on - strand at 655.147 kb on + strand at 655.154 kb on - strand at 655.185 kb on + strand, within MMJJ_RS03490 at 655.353 kb on - strand, within MMJJ_RS03490 at 655.591 kb on - strand, within MMJJ_RS03490 at 655.592 kb on + strand, within MMJJ_RS03490 at 655.611 kb on + strand at 655.615 kb on - strand at 655.644 kb on + strand at 655.644 kb on + strand at 655.647 kb on + strand at 655.647 kb on - strand at 655.647 kb on - strand at 655.647 kb on - strand at 655.648 kb on + strand at 655.648 kb on + strand at 655.648 kb on + strand at 655.648 kb on + strand at 655.649 kb on - strand at 655.649 kb on - strand at 655.650 kb on + strand at 655.655 kb on + strand at 655.668 kb on - strand at 655.668 kb on - strand at 655.673 kb on - strand at 655.726 kb on - strand, within MMJJ_RS03495 at 655.744 kb on - strand, within MMJJ_RS03495 at 655.745 kb on + strand, within MMJJ_RS03495 at 655.745 kb on + strand, within MMJJ_RS03495 at 655.819 kb on - strand, within MMJJ_RS03495 at 655.820 kb on + strand, within MMJJ_RS03495 at 655.849 kb on + strand, within MMJJ_RS03495 at 655.855 kb on - strand, within MMJJ_RS03495 at 655.858 kb on + strand, within MMJJ_RS03495 at 655.885 kb on - strand, within MMJJ_RS03495 at 655.900 kb on - strand, within MMJJ_RS03495 at 655.900 kb on - strand, within MMJJ_RS03495 at 655.901 kb on + strand, within MMJJ_RS03495 at 655.970 kb on + strand at 655.977 kb on - strand at 655.977 kb on - strand at 655.978 kb on + strand at 655.978 kb on + strand at 655.979 kb on - strand at 655.980 kb on + strand at 655.985 kb on - strand at 655.996 kb on + strand at 655.999 kb on - strand at 656.000 kb on + strand at 656.023 kb on + strand at 656.035 kb on + strand at 656.116 kb on - strand at 656.133 kb on + strand at 656.134 kb on - strand at 656.135 kb on + strand at 656.173 kb on - strand at 656.188 kb on - strand at 656.245 kb on - strand, within MMJJ_RS03500 at 656.246 kb on + strand, within MMJJ_RS03500 at 656.258 kb on - strand, within MMJJ_RS03500 at 656.259 kb on + strand, within MMJJ_RS03500 at 656.278 kb on - strand, within MMJJ_RS03500 at 656.279 kb on + strand, within MMJJ_RS03500 at 656.311 kb on - strand, within MMJJ_RS03500 at 656.329 kb on - strand, within MMJJ_RS03500 at 656.330 kb on + strand, within MMJJ_RS03500 at 656.330 kb on + strand, within MMJJ_RS03500 at 656.331 kb on - strand, within MMJJ_RS03500 at 656.332 kb on + strand, within MMJJ_RS03500 at 656.332 kb on + strand, within MMJJ_RS03500 at 656.384 kb on + strand, within MMJJ_RS03500 at 656.429 kb on - strand, within MMJJ_RS03500 at 656.429 kb on - strand, within MMJJ_RS03500 at 656.518 kb on - strand, within MMJJ_RS03500 at 656.519 kb on + strand, within MMJJ_RS03500 at 656.584 kb on - strand, within MMJJ_RS03500 at 656.584 kb on - strand, within MMJJ_RS03500 at 656.585 kb on + strand, within MMJJ_RS03500 at 656.593 kb on - strand, within MMJJ_RS03500 at 656.612 kb on - strand, within MMJJ_RS03500 at 656.617 kb on - strand, within MMJJ_RS03500 at 656.618 kb on + strand, within MMJJ_RS03500 at 656.618 kb on + strand, within MMJJ_RS03500 at 656.618 kb on + strand, within MMJJ_RS03500 at 656.644 kb on - strand, within MMJJ_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 654,153 - MMJJ_RS03485 0.36 +5.4 654,154 + MMJJ_RS03485 0.36 +0.8 654,164 - MMJJ_RS03485 0.37 +1.2 654,165 + MMJJ_RS03485 0.37 -1.6 654,204 + MMJJ_RS03485 0.40 +0.2 654,207 - MMJJ_RS03485 0.40 -2.5 654,207 - MMJJ_RS03485 0.40 -1.4 654,208 + MMJJ_RS03485 0.40 +1.1 654,401 - MMJJ_RS03485 0.54 +0.1 654,423 + MMJJ_RS03485 0.56 +0.9 654,423 + MMJJ_RS03485 0.56 +1.1 654,441 - MMJJ_RS03485 0.57 -0.2 654,441 - MMJJ_RS03485 0.57 +1.1 654,442 + MMJJ_RS03485 0.57 +0.6 654,442 + MMJJ_RS03485 0.57 -0.9 654,443 - MMJJ_RS03485 0.57 +3.6 654,443 - MMJJ_RS03485 0.57 -1.6 654,444 + MMJJ_RS03485 0.57 +0.5 654,444 + MMJJ_RS03485 0.57 -0.1 654,487 - MMJJ_RS03485 0.60 +4.1 654,487 - MMJJ_RS03485 0.60 +1.2 654,488 + MMJJ_RS03485 0.60 +1.9 654,490 + MMJJ_RS03485 0.61 +2.3 654,546 - MMJJ_RS03485 0.65 -0.3 654,547 + MMJJ_RS03485 0.65 +2.6 654,550 + MMJJ_RS03485 0.65 +0.1 654,608 - MMJJ_RS03485 0.69 +1.7 654,608 - MMJJ_RS03485 0.69 +0.4 654,608 - MMJJ_RS03485 0.69 +3.5 654,609 + MMJJ_RS03485 0.69 +0.6 654,611 + MMJJ_RS03485 0.69 +0.9 654,642 + MMJJ_RS03485 0.72 +1.4 654,677 + MMJJ_RS03485 0.74 +5.4 654,708 - MMJJ_RS03485 0.76 +1.3 654,709 + MMJJ_RS03485 0.77 -0.5 654,709 + MMJJ_RS03485 0.77 +1.6 654,709 + MMJJ_RS03485 0.77 -2.4 654,709 + MMJJ_RS03485 0.77 -1.6 654,711 - MMJJ_RS03485 0.77 -0.6 654,711 - MMJJ_RS03485 0.77 +2.5 654,712 + MMJJ_RS03485 0.77 +2.8 654,733 - MMJJ_RS03485 0.78 -2.4 654,769 - MMJJ_RS03485 0.81 +1.7 654,769 - MMJJ_RS03485 0.81 +0.4 654,817 - MMJJ_RS03485 0.84 -1.7 654,831 + MMJJ_RS03485 0.85 -1.8 654,848 - MMJJ_RS03485 0.87 +1.3 654,869 - MMJJ_RS03485 0.88 +2.1 654,870 + MMJJ_RS03485 0.88 -2.3 654,877 + MMJJ_RS03485 0.89 -2.4 655,007 + +2.3 655,048 + +2.9 655,053 - -0.6 655,054 + +2.2 655,054 + +1.7 655,054 + -0.9 655,057 - -0.6 655,057 - +0.9 655,063 - +1.0 655,066 - +1.0 655,066 - +2.9 655,066 - +4.2 655,067 + +2.8 655,067 + +0.4 655,067 + +1.3 655,067 + -0.3 655,070 - +1.1 655,070 - +2.5 655,070 - -1.4 655,071 + +2.7 655,071 + +0.6 655,077 + -2.5 655,078 - +0.7 655,078 - -1.3 655,078 - -2.1 655,078 - +0.8 655,078 - -0.9 655,078 - -1.6 655,078 - +1.4 655,078 - -3.2 655,078 - -0.9 655,079 + -0.6 655,079 + -2.5 655,079 + -2.9 655,079 + +1.4 655,079 + +0.2 655,081 - -3.0 655,081 - +0.1 655,081 - +2.2 655,081 - -0.3 655,082 + -2.8 655,082 + -0.6 655,082 + +3.3 655,083 - +1.8 655,083 - -0.9 655,083 - +3.9 655,084 + -0.4 655,084 + -0.1 655,084 + -2.1 655,084 + +0.9 655,087 - +2.8 655,087 - -2.9 655,087 - +0.4 655,087 - +2.3 655,087 - +1.2 655,087 - +1.4 655,088 + -2.5 655,088 + +1.4 655,088 + -2.9 655,088 + -0.6 655,088 + -3.9 655,088 + +3.0 655,089 - +2.8 655,089 - +0.5 655,089 - +0.9 655,090 + +1.4 655,090 + +1.4 655,090 + +0.9 655,098 + -0.8 655,101 - +0.7 655,146 - -1.4 655,147 + +0.4 655,154 - -0.6 655,185 + MMJJ_RS03490 0.13 -1.4 655,353 - MMJJ_RS03490 0.45 -2.7 655,591 - MMJJ_RS03490 0.90 +0.1 655,592 + MMJJ_RS03490 0.90 -1.2 655,611 + -0.6 655,615 - -0.2 655,644 + -2.6 655,644 + +2.5 655,647 + +1.3 655,647 - +1.6 655,647 - +0.4 655,647 - -2.0 655,648 + -2.2 655,648 + +0.0 655,648 + +3.3 655,648 + -1.6 655,649 - +3.2 655,649 - +1.2 655,650 + -0.4 655,655 + -1.6 655,668 - -1.1 655,668 - -1.2 655,673 - -1.1 655,726 - MMJJ_RS03495 0.17 -0.8 655,744 - MMJJ_RS03495 0.24 -0.1 655,745 + MMJJ_RS03495 0.24 +1.7 655,745 + MMJJ_RS03495 0.24 +1.4 655,819 - MMJJ_RS03495 0.54 +2.2 655,820 + MMJJ_RS03495 0.55 +1.0 655,849 + MMJJ_RS03495 0.66 -0.8 655,855 - MMJJ_RS03495 0.69 +1.8 655,858 + MMJJ_RS03495 0.70 -0.3 655,885 - MMJJ_RS03495 0.81 +1.0 655,900 - MMJJ_RS03495 0.87 -0.2 655,900 - MMJJ_RS03495 0.87 -0.2 655,901 + MMJJ_RS03495 0.87 +0.5 655,970 + -1.5 655,977 - +0.3 655,977 - -0.6 655,978 + -2.0 655,978 + +0.5 655,979 - +0.4 655,980 + -0.6 655,985 - -1.9 655,996 + +8.5 655,999 - -1.0 656,000 + -2.4 656,023 + -0.8 656,035 + +0.5 656,116 - -1.4 656,133 + -0.6 656,134 - +2.3 656,135 + -3.9 656,173 - -2.9 656,188 - -0.6 656,245 - MMJJ_RS03500 0.13 -1.4 656,246 + MMJJ_RS03500 0.13 +0.7 656,258 - MMJJ_RS03500 0.15 -1.8 656,259 + MMJJ_RS03500 0.15 +0.5 656,278 - MMJJ_RS03500 0.17 +1.4 656,279 + MMJJ_RS03500 0.17 +2.4 656,311 - MMJJ_RS03500 0.21 -0.2 656,329 - MMJJ_RS03500 0.23 -1.6 656,330 + MMJJ_RS03500 0.23 -0.9 656,330 + MMJJ_RS03500 0.23 -0.9 656,331 - MMJJ_RS03500 0.23 +0.1 656,332 + MMJJ_RS03500 0.24 +1.5 656,332 + MMJJ_RS03500 0.24 -2.0 656,384 + MMJJ_RS03500 0.30 -2.7 656,429 - MMJJ_RS03500 0.35 -0.1 656,429 - MMJJ_RS03500 0.35 -0.3 656,518 - MMJJ_RS03500 0.46 -1.5 656,519 + MMJJ_RS03500 0.46 -0.1 656,584 - MMJJ_RS03500 0.54 +1.3 656,584 - MMJJ_RS03500 0.54 +0.2 656,585 + MMJJ_RS03500 0.54 -0.2 656,593 - MMJJ_RS03500 0.55 +1.8 656,612 - MMJJ_RS03500 0.57 -0.9 656,617 - MMJJ_RS03500 0.58 +0.9 656,618 + MMJJ_RS03500 0.58 -0.2 656,618 + MMJJ_RS03500 0.58 -0.9 656,618 + MMJJ_RS03500 0.58 -1.3 656,644 - MMJJ_RS03500 0.61 -0.2
Or see this region's nucleotide sequence