Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03435 and MMJJ_RS03440 are separated by 94 nucleotides MMJJ_RS03440 and MMJJ_RS03445 are separated by 745 nucleotides
MMJJ_RS03435: MMJJ_RS03435 - hypothetical protein, at 644,187 to 645,512
_RS03435
MMJJ_RS03440: MMJJ_RS03440 - hypothetical protein, at 645,607 to 645,873
_RS03440
MMJJ_RS03445: MMJJ_RS03445 - hypothetical protein, at 646,619 to 647,167
_RS03445
Position (kb) 645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 644.625 kb on + strand, within MMJJ_RS03435 at 644.643 kb on + strand, within MMJJ_RS03435 at 644.645 kb on + strand, within MMJJ_RS03435 at 644.690 kb on + strand, within MMJJ_RS03435 at 644.707 kb on - strand, within MMJJ_RS03435 at 644.708 kb on + strand, within MMJJ_RS03435 at 644.750 kb on - strand, within MMJJ_RS03435 at 644.750 kb on - strand, within MMJJ_RS03435 at 644.754 kb on + strand, within MMJJ_RS03435 at 644.754 kb on + strand, within MMJJ_RS03435 at 644.779 kb on - strand, within MMJJ_RS03435 at 644.823 kb on - strand, within MMJJ_RS03435 at 644.824 kb on + strand, within MMJJ_RS03435 at 644.824 kb on + strand, within MMJJ_RS03435 at 644.828 kb on - strand, within MMJJ_RS03435 at 644.858 kb on - strand, within MMJJ_RS03435 at 644.858 kb on - strand, within MMJJ_RS03435 at 644.905 kb on - strand, within MMJJ_RS03435 at 644.915 kb on + strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.978 kb on - strand, within MMJJ_RS03435 at 644.979 kb on + strand, within MMJJ_RS03435 at 644.981 kb on - strand, within MMJJ_RS03435 at 644.982 kb on + strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.983 kb on - strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 644.984 kb on + strand, within MMJJ_RS03435 at 645.013 kb on - strand, within MMJJ_RS03435 at 645.033 kb on - strand, within MMJJ_RS03435 at 645.053 kb on - strand, within MMJJ_RS03435 at 645.068 kb on + strand, within MMJJ_RS03435 at 645.087 kb on - strand, within MMJJ_RS03435 at 645.087 kb on - strand, within MMJJ_RS03435 at 645.087 kb on - strand, within MMJJ_RS03435 at 645.088 kb on + strand, within MMJJ_RS03435 at 645.137 kb on + strand, within MMJJ_RS03435 at 645.176 kb on + strand, within MMJJ_RS03435 at 645.176 kb on + strand, within MMJJ_RS03435 at 645.215 kb on + strand, within MMJJ_RS03435 at 645.215 kb on + strand, within MMJJ_RS03435 at 645.235 kb on - strand, within MMJJ_RS03435 at 645.235 kb on - strand, within MMJJ_RS03435 at 645.236 kb on + strand, within MMJJ_RS03435 at 645.236 kb on + strand, within MMJJ_RS03435 at 645.269 kb on - strand, within MMJJ_RS03435 at 645.269 kb on - strand, within MMJJ_RS03435 at 645.270 kb on + strand, within MMJJ_RS03435 at 645.299 kb on - strand, within MMJJ_RS03435 at 645.299 kb on - strand, within MMJJ_RS03435 at 645.300 kb on + strand, within MMJJ_RS03435 at 645.300 kb on + strand, within MMJJ_RS03435 at 645.325 kb on - strand, within MMJJ_RS03435 at 645.371 kb on + strand, within MMJJ_RS03435 at 645.394 kb on - strand at 645.394 kb on - strand at 645.431 kb on - strand at 645.432 kb on + strand at 645.475 kb on - strand at 645.482 kb on - strand at 645.483 kb on + strand at 645.552 kb on - strand at 645.596 kb on + strand at 645.609 kb on + strand at 645.616 kb on - strand at 645.627 kb on - strand at 645.645 kb on + strand, within MMJJ_RS03440 at 645.646 kb on + strand, within MMJJ_RS03440 at 645.646 kb on + strand, within MMJJ_RS03440 at 645.648 kb on - strand, within MMJJ_RS03440 at 645.661 kb on + strand, within MMJJ_RS03440 at 645.730 kb on - strand, within MMJJ_RS03440 at 645.730 kb on - strand, within MMJJ_RS03440 at 645.730 kb on - strand, within MMJJ_RS03440 at 645.731 kb on + strand, within MMJJ_RS03440 at 645.731 kb on + strand, within MMJJ_RS03440 at 645.731 kb on + strand, within MMJJ_RS03440 at 645.732 kb on - strand, within MMJJ_RS03440 at 645.733 kb on + strand, within MMJJ_RS03440 at 645.733 kb on + strand, within MMJJ_RS03440 at 645.772 kb on + strand, within MMJJ_RS03440 at 645.791 kb on + strand, within MMJJ_RS03440 at 645.834 kb on + strand, within MMJJ_RS03440 at 645.834 kb on + strand, within MMJJ_RS03440 at 645.834 kb on + strand, within MMJJ_RS03440 at 645.837 kb on - strand, within MMJJ_RS03440 at 645.837 kb on - strand, within MMJJ_RS03440 at 645.838 kb on + strand, within MMJJ_RS03440 at 645.838 kb on + strand, within MMJJ_RS03440 at 645.838 kb on + strand, within MMJJ_RS03440 at 645.890 kb on - strand at 645.900 kb on - strand at 645.906 kb on + strand at 645.906 kb on + strand at 645.963 kb on - strand at 645.967 kb on - strand at 645.991 kb on - strand at 646.017 kb on + strand at 646.058 kb on + strand at 646.087 kb on + strand at 646.091 kb on - strand at 646.091 kb on - strand at 646.092 kb on + strand at 646.092 kb on + strand at 646.093 kb on - strand at 646.118 kb on + strand at 646.142 kb on - strand at 646.160 kb on - strand at 646.182 kb on - strand at 646.182 kb on - strand at 646.236 kb on + strand at 646.238 kb on - strand at 646.254 kb on + strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.255 kb on - strand at 646.256 kb on + strand at 646.256 kb on + strand at 646.256 kb on + strand at 646.256 kb on + strand at 646.274 kb on + strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.275 kb on - strand at 646.276 kb on + strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.277 kb on - strand at 646.278 kb on + strand at 646.278 kb on + strand at 646.278 kb on + strand at 646.279 kb on - strand at 646.279 kb on - strand at 646.280 kb on + strand at 646.283 kb on + strand at 646.351 kb on - strand at 646.352 kb on + strand at 646.378 kb on + strand at 646.390 kb on + strand at 646.393 kb on - strand at 646.397 kb on - strand at 646.397 kb on - strand at 646.406 kb on + strand at 646.462 kb on - strand at 646.537 kb on - strand at 646.550 kb on - strand at 646.550 kb on - strand at 646.551 kb on + strand at 646.551 kb on + strand at 646.562 kb on - strand at 646.563 kb on + strand at 646.564 kb on - strand at 646.564 kb on - strand at 646.566 kb on - strand at 646.566 kb on - strand at 646.567 kb on + strand at 646.567 kb on + strand at 646.567 kb on + strand at 646.567 kb on + strand at 646.569 kb on + strand at 646.569 kb on + strand at 646.616 kb on - strand at 646.616 kb on - strand at 646.616 kb on - strand at 646.617 kb on + strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.618 kb on - strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.619 kb on + strand at 646.654 kb on - strand at 646.666 kb on - strand at 646.667 kb on + strand at 646.667 kb on + strand at 646.670 kb on + strand at 646.758 kb on - strand, within MMJJ_RS03445 at 646.759 kb on + strand, within MMJJ_RS03445 at 646.797 kb on - strand, within MMJJ_RS03445 at 646.798 kb on + strand, within MMJJ_RS03445 at 646.798 kb on + strand, within MMJJ_RS03445 at 646.814 kb on + strand, within MMJJ_RS03445 at 646.814 kb on + strand, within MMJJ_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 644,625 + MMJJ_RS03435 0.33 +1.5 644,643 + MMJJ_RS03435 0.34 -0.8 644,645 + MMJJ_RS03435 0.35 +1.9 644,690 + MMJJ_RS03435 0.38 +1.8 644,707 - MMJJ_RS03435 0.39 +1.0 644,708 + MMJJ_RS03435 0.39 +0.6 644,750 - MMJJ_RS03435 0.42 +1.3 644,750 - MMJJ_RS03435 0.42 -1.9 644,754 + MMJJ_RS03435 0.43 -0.4 644,754 + MMJJ_RS03435 0.43 -1.3 644,779 - MMJJ_RS03435 0.45 -1.2 644,823 - MMJJ_RS03435 0.48 +2.0 644,824 + MMJJ_RS03435 0.48 -0.6 644,824 + MMJJ_RS03435 0.48 -0.2 644,828 - MMJJ_RS03435 0.48 +0.4 644,858 - MMJJ_RS03435 0.51 -0.5 644,858 - MMJJ_RS03435 0.51 -0.2 644,905 - MMJJ_RS03435 0.54 -1.8 644,915 + MMJJ_RS03435 0.55 -1.4 644,978 - MMJJ_RS03435 0.60 -1.4 644,978 - MMJJ_RS03435 0.60 -2.4 644,978 - MMJJ_RS03435 0.60 +0.4 644,979 + MMJJ_RS03435 0.60 -1.0 644,981 - MMJJ_RS03435 0.60 +1.1 644,982 + MMJJ_RS03435 0.60 +3.8 644,983 - MMJJ_RS03435 0.60 +1.4 644,983 - MMJJ_RS03435 0.60 -1.0 644,983 - MMJJ_RS03435 0.60 -0.1 644,984 + MMJJ_RS03435 0.60 -3.3 644,984 + MMJJ_RS03435 0.60 +1.9 644,984 + MMJJ_RS03435 0.60 +1.4 645,013 - MMJJ_RS03435 0.62 -0.2 645,033 - MMJJ_RS03435 0.64 +2.2 645,053 - MMJJ_RS03435 0.65 +0.3 645,068 + MMJJ_RS03435 0.66 +2.1 645,087 - MMJJ_RS03435 0.68 +1.0 645,087 - MMJJ_RS03435 0.68 -0.2 645,087 - MMJJ_RS03435 0.68 +0.5 645,088 + MMJJ_RS03435 0.68 -0.6 645,137 + MMJJ_RS03435 0.72 -1.3 645,176 + MMJJ_RS03435 0.75 +2.4 645,176 + MMJJ_RS03435 0.75 -3.6 645,215 + MMJJ_RS03435 0.78 -0.2 645,215 + MMJJ_RS03435 0.78 -1.2 645,235 - MMJJ_RS03435 0.79 +2.0 645,235 - MMJJ_RS03435 0.79 +2.1 645,236 + MMJJ_RS03435 0.79 -0.5 645,236 + MMJJ_RS03435 0.79 -0.8 645,269 - MMJJ_RS03435 0.82 +0.6 645,269 - MMJJ_RS03435 0.82 -0.8 645,270 + MMJJ_RS03435 0.82 +4.3 645,299 - MMJJ_RS03435 0.84 +3.0 645,299 - MMJJ_RS03435 0.84 -2.7 645,300 + MMJJ_RS03435 0.84 -1.2 645,300 + MMJJ_RS03435 0.84 -0.6 645,325 - MMJJ_RS03435 0.86 -1.2 645,371 + MMJJ_RS03435 0.89 +0.6 645,394 - +1.1 645,394 - +1.9 645,431 - +2.1 645,432 + -1.7 645,475 - -0.9 645,482 - +0.7 645,483 + -0.5 645,552 - -0.6 645,596 + -1.5 645,609 + +0.9 645,616 - -2.2 645,627 - +0.1 645,645 + MMJJ_RS03440 0.14 -0.5 645,646 + MMJJ_RS03440 0.15 -0.5 645,646 + MMJJ_RS03440 0.15 -1.8 645,648 - MMJJ_RS03440 0.15 -0.7 645,661 + MMJJ_RS03440 0.20 -2.6 645,730 - MMJJ_RS03440 0.46 -0.2 645,730 - MMJJ_RS03440 0.46 +0.7 645,730 - MMJJ_RS03440 0.46 +0.1 645,731 + MMJJ_RS03440 0.46 -1.2 645,731 + MMJJ_RS03440 0.46 -2.3 645,731 + MMJJ_RS03440 0.46 -1.0 645,732 - MMJJ_RS03440 0.47 +0.6 645,733 + MMJJ_RS03440 0.47 +0.4 645,733 + MMJJ_RS03440 0.47 +0.6 645,772 + MMJJ_RS03440 0.62 -0.2 645,791 + MMJJ_RS03440 0.69 +2.0 645,834 + MMJJ_RS03440 0.85 -0.2 645,834 + MMJJ_RS03440 0.85 -0.4 645,834 + MMJJ_RS03440 0.85 -0.4 645,837 - MMJJ_RS03440 0.86 -0.2 645,837 - MMJJ_RS03440 0.86 +0.8 645,838 + MMJJ_RS03440 0.87 -2.1 645,838 + MMJJ_RS03440 0.87 -0.3 645,838 + MMJJ_RS03440 0.87 +1.5 645,890 - -2.8 645,900 - -2.9 645,906 + -1.0 645,906 + -0.9 645,963 - +1.0 645,967 - -0.9 645,991 - +2.0 646,017 + -2.9 646,058 + -2.1 646,087 + +2.3 646,091 - +1.6 646,091 - +3.6 646,092 + +1.8 646,092 + +1.0 646,093 - -3.3 646,118 + -0.9 646,142 - -1.8 646,160 - +3.6 646,182 - -0.9 646,182 - +0.2 646,236 + +1.5 646,238 - +2.2 646,254 + +1.4 646,255 - -2.5 646,255 - +2.2 646,255 - +1.5 646,255 - -0.4 646,255 - +1.8 646,256 + +2.1 646,256 + +1.8 646,256 + -1.6 646,256 + -2.2 646,274 + +0.9 646,275 - +1.7 646,275 - -1.7 646,275 - +0.7 646,275 - -0.4 646,275 - -1.9 646,275 - +0.4 646,276 + +0.3 646,277 - -2.6 646,277 - -1.0 646,277 - +5.0 646,277 - +0.3 646,277 - +2.6 646,277 - +4.6 646,277 - +1.6 646,277 - -0.6 646,278 + +1.8 646,278 + -2.0 646,278 + -0.5 646,279 - -1.0 646,279 - +1.4 646,280 + +4.0 646,283 + -1.3 646,351 - -0.6 646,352 + -2.6 646,378 + +1.5 646,390 + -0.0 646,393 - -0.5 646,397 - -0.6 646,397 - -2.9 646,406 + -2.8 646,462 - +1.0 646,537 - -1.7 646,550 - +0.9 646,550 - +0.9 646,551 + +0.8 646,551 + +3.1 646,562 - -1.7 646,563 + -2.2 646,564 - -2.3 646,564 - +0.9 646,566 - +0.7 646,566 - -2.0 646,567 + +1.9 646,567 + +1.2 646,567 + +0.8 646,567 + -0.8 646,569 + -0.8 646,569 + +0.2 646,616 - -2.2 646,616 - -0.7 646,616 - -0.2 646,617 + -0.6 646,618 - +0.4 646,618 - -1.2 646,618 - +0.9 646,618 - +3.5 646,618 - -0.9 646,618 - +3.5 646,619 + +2.9 646,619 + -1.3 646,619 + -2.5 646,619 + -1.2 646,619 + +0.6 646,619 + -0.3 646,619 + +0.7 646,654 - +0.7 646,666 - -1.0 646,667 + +2.0 646,667 + +0.4 646,670 + +2.6 646,758 - MMJJ_RS03445 0.25 +1.9 646,759 + MMJJ_RS03445 0.26 +0.4 646,797 - MMJJ_RS03445 0.32 +1.3 646,798 + MMJJ_RS03445 0.33 -0.9 646,798 + MMJJ_RS03445 0.33 +0.3 646,814 + MMJJ_RS03445 0.36 -0.8 646,814 + MMJJ_RS03445 0.36 -0.6
Or see this region's nucleotide sequence