Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03370 and MMJJ_RS03375 are separated by 18 nucleotides MMJJ_RS03375 and MMJJ_RS03380 are separated by 65 nucleotides MMJJ_RS03380 and MMJJ_RS03385 are separated by 5 nucleotides MMJJ_RS03385 and MMJJ_RS03390 are separated by 0 nucleotides MMJJ_RS03390 and MMJJ_RS09295 are separated by 7 nucleotides MMJJ_RS09295 and MMJJ_RS03395 are separated by 24 nucleotides MMJJ_RS03395 and MMJJ_RS09300 are separated by 12 nucleotides MMJJ_RS09300 and MMJJ_RS03400 are separated by 11 nucleotides MMJJ_RS03400 and MMJJ_RS03405 overlap by 8 nucleotides
MMJJ_RS03370: MMJJ_RS03370 - hypothetical protein, at 638,604 to 638,948
_RS03370
MMJJ_RS03375: MMJJ_RS03375 - hypothetical protein, at 638,967 to 639,152
_RS03375
MMJJ_RS03380: MMJJ_RS03380 - hypothetical protein, at 639,218 to 639,454
_RS03380
MMJJ_RS03385: MMJJ_RS03385 - hypothetical protein, at 639,460 to 639,825
_RS03385
MMJJ_RS03390: MMJJ_RS03390 - hypothetical protein, at 639,826 to 640,062
_RS03390
MMJJ_RS09295: MMJJ_RS09295 - hypothetical protein, at 640,070 to 640,225
_RS09295
MMJJ_RS03395: MMJJ_RS03395 - hypothetical protein, at 640,250 to 640,474
_RS03395
MMJJ_RS09300: MMJJ_RS09300 - hypothetical protein, at 640,487 to 640,660
_RS09300
MMJJ_RS03400: MMJJ_RS03400 - hypothetical protein, at 640,672 to 640,908
_RS03400
MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241
_RS03405
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 638.887 kb on - strand, within MMJJ_RS03370 at 638.888 kb on + strand, within MMJJ_RS03370 at 638.891 kb on - strand, within MMJJ_RS03370 at 638.892 kb on + strand, within MMJJ_RS03370 at 638.922 kb on - strand at 638.923 kb on + strand at 638.943 kb on - strand at 638.943 kb on - strand at 638.951 kb on + strand at 638.988 kb on - strand, within MMJJ_RS03375 at 639.039 kb on + strand, within MMJJ_RS03375 at 639.078 kb on - strand, within MMJJ_RS03375 at 639.078 kb on - strand, within MMJJ_RS03375 at 639.080 kb on - strand, within MMJJ_RS03375 at 639.080 kb on - strand, within MMJJ_RS03375 at 639.121 kb on - strand, within MMJJ_RS03375 at 639.121 kb on - strand, within MMJJ_RS03375 at 639.129 kb on - strand, within MMJJ_RS03375 at 639.169 kb on + strand at 639.169 kb on + strand at 639.190 kb on - strand at 639.206 kb on - strand at 639.206 kb on - strand at 639.209 kb on - strand at 639.210 kb on + strand at 639.213 kb on + strand at 639.308 kb on - strand, within MMJJ_RS03380 at 639.308 kb on - strand, within MMJJ_RS03380 at 639.308 kb on - strand, within MMJJ_RS03380 at 639.309 kb on + strand, within MMJJ_RS03380 at 639.312 kb on - strand, within MMJJ_RS03380 at 639.313 kb on + strand, within MMJJ_RS03380 at 639.313 kb on + strand, within MMJJ_RS03380 at 639.320 kb on - strand, within MMJJ_RS03380 at 639.505 kb on + strand, within MMJJ_RS03385 at 639.523 kb on + strand at 639.563 kb on - strand, within MMJJ_RS03385 at 639.575 kb on + strand, within MMJJ_RS03385 at 639.591 kb on - strand, within MMJJ_RS03385 at 639.592 kb on + strand, within MMJJ_RS03385 at 639.623 kb on + strand, within MMJJ_RS03385 at 639.652 kb on + strand, within MMJJ_RS03385 at 639.690 kb on + strand, within MMJJ_RS03385 at 639.694 kb on - strand, within MMJJ_RS03385 at 639.715 kb on - strand, within MMJJ_RS03385 at 639.715 kb on - strand, within MMJJ_RS03385 at 639.743 kb on - strand, within MMJJ_RS03385 at 639.743 kb on - strand, within MMJJ_RS03385 at 639.744 kb on + strand, within MMJJ_RS03385 at 639.747 kb on - strand, within MMJJ_RS03385 at 639.748 kb on + strand, within MMJJ_RS03385 at 639.862 kb on + strand, within MMJJ_RS03390 at 640.071 kb on - strand at 640.072 kb on + strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.077 kb on - strand at 640.111 kb on - strand, within MMJJ_RS09295 at 640.330 kb on - strand, within MMJJ_RS03395 at 640.330 kb on - strand, within MMJJ_RS03395 at 640.332 kb on - strand, within MMJJ_RS03395 at 640.332 kb on - strand, within MMJJ_RS03395 at 640.333 kb on + strand, within MMJJ_RS03395 at 640.456 kb on - strand at 640.457 kb on + strand at 640.462 kb on - strand at 640.488 kb on - strand at 640.488 kb on - strand at 640.489 kb on + strand at 640.500 kb on + strand at 640.577 kb on - strand, within MMJJ_RS09300 at 640.640 kb on - strand, within MMJJ_RS09300
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 638,887 - MMJJ_RS03370 0.82 +0.7 638,888 + MMJJ_RS03370 0.82 -3.0 638,891 - MMJJ_RS03370 0.83 +1.8 638,892 + MMJJ_RS03370 0.83 -0.4 638,922 - -3.3 638,923 + -0.2 638,943 - -1.8 638,943 - -2.1 638,951 + -3.2 638,988 - MMJJ_RS03375 0.11 +1.4 639,039 + MMJJ_RS03375 0.39 -1.0 639,078 - MMJJ_RS03375 0.60 +0.6 639,078 - MMJJ_RS03375 0.60 +1.2 639,080 - MMJJ_RS03375 0.61 +0.2 639,080 - MMJJ_RS03375 0.61 +0.8 639,121 - MMJJ_RS03375 0.83 -0.2 639,121 - MMJJ_RS03375 0.83 +1.4 639,129 - MMJJ_RS03375 0.87 -0.3 639,169 + -1.6 639,169 + +0.0 639,190 - +2.6 639,206 - -0.2 639,206 - +0.2 639,209 - +1.8 639,210 + -1.1 639,213 + +1.8 639,308 - MMJJ_RS03380 0.38 -0.6 639,308 - MMJJ_RS03380 0.38 +1.1 639,308 - MMJJ_RS03380 0.38 -3.5 639,309 + MMJJ_RS03380 0.38 -1.2 639,312 - MMJJ_RS03380 0.40 +0.9 639,313 + MMJJ_RS03380 0.40 -0.7 639,313 + MMJJ_RS03380 0.40 -2.4 639,320 - MMJJ_RS03380 0.43 +0.6 639,505 + MMJJ_RS03385 0.12 +0.6 639,523 + +1.4 639,563 - MMJJ_RS03385 0.28 -1.0 639,575 + MMJJ_RS03385 0.31 +1.6 639,591 - MMJJ_RS03385 0.36 -2.0 639,592 + MMJJ_RS03385 0.36 +3.9 639,623 + MMJJ_RS03385 0.45 +0.3 639,652 + MMJJ_RS03385 0.52 -2.4 639,690 + MMJJ_RS03385 0.63 -1.2 639,694 - MMJJ_RS03385 0.64 -3.1 639,715 - MMJJ_RS03385 0.70 -2.1 639,715 - MMJJ_RS03385 0.70 +0.5 639,743 - MMJJ_RS03385 0.77 +1.7 639,743 - MMJJ_RS03385 0.77 -2.5 639,744 + MMJJ_RS03385 0.78 -0.5 639,747 - MMJJ_RS03385 0.78 +0.9 639,748 + MMJJ_RS03385 0.79 -1.4 639,862 + MMJJ_RS03390 0.15 -2.0 640,071 - +2.1 640,072 + -0.2 640,075 - -0.7 640,075 - +1.0 640,075 - -1.4 640,075 - -2.3 640,075 - +0.4 640,075 - +1.9 640,077 - +2.1 640,111 - MMJJ_RS09295 0.26 -0.2 640,330 - MMJJ_RS03395 0.36 -1.1 640,330 - MMJJ_RS03395 0.36 +2.0 640,332 - MMJJ_RS03395 0.36 -0.3 640,332 - MMJJ_RS03395 0.36 -1.2 640,333 + MMJJ_RS03395 0.37 +0.7 640,456 - +0.4 640,457 + -1.1 640,462 - +0.5 640,488 - +2.0 640,488 - -0.2 640,489 + -1.6 640,500 + +1.7 640,577 - MMJJ_RS09300 0.52 +1.3 640,640 - MMJJ_RS09300 0.88 +1.7
Or see this region's nucleotide sequence