Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03350 and MMJJ_RS03355 are separated by 195 nucleotides MMJJ_RS03355 and MMJJ_RS03360 are separated by 21 nucleotides MMJJ_RS03360 and MMJJ_RS03365 are separated by 13 nucleotides
MMJJ_RS03350: MMJJ_RS03350 - hypothetical protein, at 635,860 to 636,087
_RS03350
MMJJ_RS03355: MMJJ_RS03355 - hypothetical protein, at 636,283 to 636,924
_RS03355
MMJJ_RS03360: MMJJ_RS03360 - hypothetical protein, at 636,946 to 637,128
_RS03360
MMJJ_RS03365: MMJJ_RS03365 - hypothetical protein, at 637,142 to 638,623
_RS03365
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 635.954 kb on - strand, within MMJJ_RS03350 at 635.992 kb on - strand, within MMJJ_RS03350 at 636.000 kb on - strand, within MMJJ_RS03350 at 636.169 kb on - strand at 636.169 kb on - strand at 636.173 kb on + strand at 636.178 kb on + strand at 636.284 kb on - strand at 636.284 kb on - strand at 636.294 kb on - strand at 636.294 kb on - strand at 636.301 kb on - strand at 636.306 kb on - strand at 636.325 kb on - strand at 636.325 kb on - strand at 636.326 kb on + strand at 636.328 kb on + strand at 636.328 kb on + strand at 636.366 kb on - strand, within MMJJ_RS03355 at 636.367 kb on + strand, within MMJJ_RS03355 at 636.375 kb on - strand, within MMJJ_RS03355 at 636.433 kb on + strand, within MMJJ_RS03355 at 636.474 kb on - strand at 636.499 kb on - strand, within MMJJ_RS03355 at 636.500 kb on + strand, within MMJJ_RS03355 at 636.522 kb on - strand, within MMJJ_RS03355 at 636.549 kb on - strand, within MMJJ_RS03355 at 636.549 kb on - strand, within MMJJ_RS03355 at 636.550 kb on + strand, within MMJJ_RS03355 at 636.633 kb on - strand, within MMJJ_RS03355 at 636.633 kb on - strand, within MMJJ_RS03355 at 636.637 kb on - strand, within MMJJ_RS03355 at 636.637 kb on - strand, within MMJJ_RS03355 at 636.654 kb on - strand, within MMJJ_RS03355 at 636.655 kb on + strand, within MMJJ_RS03355 at 636.676 kb on - strand, within MMJJ_RS03355 at 636.677 kb on + strand, within MMJJ_RS03355 at 636.679 kb on - strand, within MMJJ_RS03355 at 636.684 kb on - strand, within MMJJ_RS03355 at 636.684 kb on - strand, within MMJJ_RS03355 at 636.685 kb on + strand, within MMJJ_RS03355 at 636.690 kb on + strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.712 kb on + strand, within MMJJ_RS03355 at 636.715 kb on - strand, within MMJJ_RS03355 at 636.715 kb on - strand, within MMJJ_RS03355 at 636.724 kb on + strand, within MMJJ_RS03355 at 636.774 kb on - strand, within MMJJ_RS03355 at 636.784 kb on - strand, within MMJJ_RS03355 at 636.792 kb on - strand, within MMJJ_RS03355 at 636.831 kb on - strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.849 kb on - strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.871 kb on + strand at 636.874 kb on - strand at 636.875 kb on + strand at 636.875 kb on + strand at 636.875 kb on + strand at 636.906 kb on + strand at 636.927 kb on - strand at 637.108 kb on + strand, within MMJJ_RS03360 at 637.108 kb on + strand, within MMJJ_RS03360 at 637.143 kb on - strand at 637.144 kb on + strand at 637.150 kb on - strand at 637.150 kb on - strand at 637.150 kb on - strand at 637.151 kb on + strand at 637.169 kb on + strand at 637.221 kb on + strand at 637.296 kb on - strand, within MMJJ_RS03365 at 637.296 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.298 kb on - strand, within MMJJ_RS03365 at 637.299 kb on + strand at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.299 kb on + strand, within MMJJ_RS03365 at 637.334 kb on + strand, within MMJJ_RS03365 at 637.334 kb on + strand, within MMJJ_RS03365 at 637.357 kb on - strand, within MMJJ_RS03365 at 637.375 kb on + strand, within MMJJ_RS03365 at 637.377 kb on - strand, within MMJJ_RS03365 at 637.377 kb on - strand, within MMJJ_RS03365 at 637.377 kb on - strand, within MMJJ_RS03365 at 637.377 kb on - strand, within MMJJ_RS03365 at 637.377 kb on - strand, within MMJJ_RS03365 at 637.377 kb on - strand, within MMJJ_RS03365 at 637.378 kb on + strand, within MMJJ_RS03365 at 637.381 kb on - strand, within MMJJ_RS03365 at 637.381 kb on - strand, within MMJJ_RS03365 at 637.381 kb on - strand, within MMJJ_RS03365 at 637.382 kb on + strand, within MMJJ_RS03365 at 637.465 kb on - strand, within MMJJ_RS03365 at 637.465 kb on - strand, within MMJJ_RS03365 at 637.475 kb on + strand, within MMJJ_RS03365 at 637.475 kb on + strand, within MMJJ_RS03365 at 637.537 kb on - strand, within MMJJ_RS03365 at 637.537 kb on - strand, within MMJJ_RS03365 at 637.571 kb on + strand, within MMJJ_RS03365 at 637.630 kb on - strand, within MMJJ_RS03365 at 637.658 kb on - strand, within MMJJ_RS03365 at 637.700 kb on - strand, within MMJJ_RS03365 at 637.700 kb on - strand, within MMJJ_RS03365 at 637.711 kb on + strand, within MMJJ_RS03365 at 637.771 kb on - strand, within MMJJ_RS03365 at 637.807 kb on - strand, within MMJJ_RS03365 at 637.809 kb on - strand, within MMJJ_RS03365 at 637.809 kb on - strand, within MMJJ_RS03365 at 637.810 kb on + strand, within MMJJ_RS03365 at 637.810 kb on + strand, within MMJJ_RS03365 at 637.810 kb on + strand, within MMJJ_RS03365 at 637.815 kb on + strand, within MMJJ_RS03365 at 637.817 kb on - strand, within MMJJ_RS03365 at 637.836 kb on - strand, within MMJJ_RS03365 at 637.839 kb on - strand, within MMJJ_RS03365 at 637.861 kb on + strand, within MMJJ_RS03365 at 637.861 kb on + strand, within MMJJ_RS03365 at 637.869 kb on + strand, within MMJJ_RS03365 at 637.869 kb on + strand, within MMJJ_RS03365 at 637.869 kb on + strand, within MMJJ_RS03365 at 637.878 kb on - strand, within MMJJ_RS03365 at 637.878 kb on - strand, within MMJJ_RS03365 at 637.885 kb on - strand, within MMJJ_RS03365 at 637.887 kb on - strand, within MMJJ_RS03365 at 637.887 kb on - strand, within MMJJ_RS03365 at 637.888 kb on + strand, within MMJJ_RS03365 at 637.890 kb on - strand, within MMJJ_RS03365 at 637.903 kb on + strand, within MMJJ_RS03365 at 637.907 kb on + strand, within MMJJ_RS03365 at 637.936 kb on - strand, within MMJJ_RS03365 at 637.954 kb on - strand, within MMJJ_RS03365 at 637.955 kb on + strand, within MMJJ_RS03365 at 637.959 kb on + strand, within MMJJ_RS03365 at 638.001 kb on - strand, within MMJJ_RS03365 at 638.005 kb on - strand, within MMJJ_RS03365 at 638.005 kb on - strand, within MMJJ_RS03365 at 638.005 kb on - strand, within MMJJ_RS03365 at 638.006 kb on + strand, within MMJJ_RS03365 at 638.008 kb on + strand, within MMJJ_RS03365 at 638.051 kb on + strand, within MMJJ_RS03365 at 638.051 kb on + strand, within MMJJ_RS03365 at 638.054 kb on - strand, within MMJJ_RS03365 at 638.069 kb on + strand, within MMJJ_RS03365 at 638.098 kb on + strand, within MMJJ_RS03365 at 638.098 kb on + strand, within MMJJ_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 635,954 - MMJJ_RS03350 0.41 -1.7 635,992 - MMJJ_RS03350 0.58 +1.4 636,000 - MMJJ_RS03350 0.61 +0.9 636,169 - +1.4 636,169 - +1.4 636,173 + +0.2 636,178 + +1.4 636,284 - +0.1 636,284 - +0.3 636,294 - +1.4 636,294 - +2.8 636,301 - -1.6 636,306 - +0.4 636,325 - -0.4 636,325 - +0.8 636,326 + -1.5 636,328 + -0.6 636,328 + +2.8 636,366 - MMJJ_RS03355 0.13 -1.0 636,367 + MMJJ_RS03355 0.13 -1.2 636,375 - MMJJ_RS03355 0.14 +3.7 636,433 + MMJJ_RS03355 0.23 +2.1 636,474 - +1.4 636,499 - MMJJ_RS03355 0.34 +3.3 636,500 + MMJJ_RS03355 0.34 -2.9 636,522 - MMJJ_RS03355 0.37 -0.3 636,549 - MMJJ_RS03355 0.41 +0.5 636,549 - MMJJ_RS03355 0.41 -0.3 636,550 + MMJJ_RS03355 0.42 -1.4 636,633 - MMJJ_RS03355 0.55 -3.4 636,633 - MMJJ_RS03355 0.55 +2.7 636,637 - MMJJ_RS03355 0.55 +0.9 636,637 - MMJJ_RS03355 0.55 +0.4 636,654 - MMJJ_RS03355 0.58 -2.2 636,655 + MMJJ_RS03355 0.58 -0.2 636,676 - MMJJ_RS03355 0.61 -0.8 636,677 + MMJJ_RS03355 0.61 -1.4 636,679 - MMJJ_RS03355 0.62 +1.8 636,684 - MMJJ_RS03355 0.62 -1.5 636,684 - MMJJ_RS03355 0.62 +0.4 636,685 + MMJJ_RS03355 0.63 -1.7 636,690 + MMJJ_RS03355 0.63 +3.3 636,694 - MMJJ_RS03355 0.64 -1.8 636,694 - MMJJ_RS03355 0.64 +2.0 636,694 - MMJJ_RS03355 0.64 +2.2 636,712 + MMJJ_RS03355 0.67 +3.7 636,715 - MMJJ_RS03355 0.67 -1.4 636,715 - MMJJ_RS03355 0.67 +2.8 636,724 + MMJJ_RS03355 0.69 -1.5 636,774 - MMJJ_RS03355 0.76 +1.5 636,784 - MMJJ_RS03355 0.78 -2.0 636,792 - MMJJ_RS03355 0.79 +1.4 636,831 - MMJJ_RS03355 0.85 -0.4 636,832 + MMJJ_RS03355 0.86 -2.3 636,832 + MMJJ_RS03355 0.86 +0.4 636,832 + MMJJ_RS03355 0.86 -2.3 636,849 - MMJJ_RS03355 0.88 +1.2 636,850 + MMJJ_RS03355 0.88 -0.9 636,850 + MMJJ_RS03355 0.88 -1.0 636,850 + MMJJ_RS03355 0.88 +1.0 636,871 + +0.5 636,874 - +2.5 636,875 + -2.5 636,875 + -1.7 636,875 + +4.5 636,906 + -2.2 636,927 - -2.5 637,108 + MMJJ_RS03360 0.89 -1.2 637,108 + MMJJ_RS03360 0.89 -1.0 637,143 - -2.3 637,144 + -1.2 637,150 - -0.8 637,150 - -0.7 637,150 - -1.1 637,151 + -0.4 637,169 + -1.6 637,221 + -2.2 637,296 - MMJJ_RS03365 0.10 +1.8 637,296 - MMJJ_RS03365 0.10 +0.4 637,298 - MMJJ_RS03365 0.11 +2.7 637,298 - MMJJ_RS03365 0.11 -0.2 637,298 - MMJJ_RS03365 0.11 +0.4 637,298 - MMJJ_RS03365 0.11 +1.3 637,298 - MMJJ_RS03365 0.11 -0.2 637,298 - MMJJ_RS03365 0.11 +3.8 637,298 - MMJJ_RS03365 0.11 +2.3 637,298 - MMJJ_RS03365 0.11 -1.4 637,299 + +0.4 637,299 + MMJJ_RS03365 0.11 -1.6 637,299 + MMJJ_RS03365 0.11 -0.4 637,299 + MMJJ_RS03365 0.11 +3.4 637,299 + MMJJ_RS03365 0.11 -0.6 637,299 + MMJJ_RS03365 0.11 +2.0 637,299 + MMJJ_RS03365 0.11 -0.1 637,299 + MMJJ_RS03365 0.11 +3.6 637,299 + MMJJ_RS03365 0.11 +2.6 637,299 + MMJJ_RS03365 0.11 +2.9 637,299 + MMJJ_RS03365 0.11 -0.9 637,299 + MMJJ_RS03365 0.11 -1.0 637,334 + MMJJ_RS03365 0.13 -0.8 637,334 + MMJJ_RS03365 0.13 -2.0 637,357 - MMJJ_RS03365 0.15 -2.0 637,375 + MMJJ_RS03365 0.16 -2.0 637,377 - MMJJ_RS03365 0.16 +2.9 637,377 - MMJJ_RS03365 0.16 +0.8 637,377 - MMJJ_RS03365 0.16 -1.8 637,377 - MMJJ_RS03365 0.16 -0.5 637,377 - MMJJ_RS03365 0.16 -0.5 637,377 - MMJJ_RS03365 0.16 -1.2 637,378 + MMJJ_RS03365 0.16 -2.5 637,381 - MMJJ_RS03365 0.16 +0.4 637,381 - MMJJ_RS03365 0.16 -0.9 637,381 - MMJJ_RS03365 0.16 -0.3 637,382 + MMJJ_RS03365 0.16 +0.3 637,465 - MMJJ_RS03365 0.22 +2.0 637,465 - MMJJ_RS03365 0.22 -0.3 637,475 + MMJJ_RS03365 0.22 +1.6 637,475 + MMJJ_RS03365 0.22 +1.2 637,537 - MMJJ_RS03365 0.27 +0.4 637,537 - MMJJ_RS03365 0.27 -1.2 637,571 + MMJJ_RS03365 0.29 +1.7 637,630 - MMJJ_RS03365 0.33 +1.1 637,658 - MMJJ_RS03365 0.35 -0.4 637,700 - MMJJ_RS03365 0.38 -1.2 637,700 - MMJJ_RS03365 0.38 +0.8 637,711 + MMJJ_RS03365 0.38 -0.6 637,771 - MMJJ_RS03365 0.42 -0.1 637,807 - MMJJ_RS03365 0.45 +1.5 637,809 - MMJJ_RS03365 0.45 -1.2 637,809 - MMJJ_RS03365 0.45 -1.5 637,810 + MMJJ_RS03365 0.45 -1.6 637,810 + MMJJ_RS03365 0.45 -1.8 637,810 + MMJJ_RS03365 0.45 -0.2 637,815 + MMJJ_RS03365 0.45 -0.8 637,817 - MMJJ_RS03365 0.46 +1.5 637,836 - MMJJ_RS03365 0.47 -2.8 637,839 - MMJJ_RS03365 0.47 +0.2 637,861 + MMJJ_RS03365 0.49 -0.8 637,861 + MMJJ_RS03365 0.49 -0.2 637,869 + MMJJ_RS03365 0.49 +2.9 637,869 + MMJJ_RS03365 0.49 +1.2 637,869 + MMJJ_RS03365 0.49 +2.1 637,878 - MMJJ_RS03365 0.50 -1.5 637,878 - MMJJ_RS03365 0.50 +0.6 637,885 - MMJJ_RS03365 0.50 -2.0 637,887 - MMJJ_RS03365 0.50 +0.8 637,887 - MMJJ_RS03365 0.50 +1.2 637,888 + MMJJ_RS03365 0.50 -1.0 637,890 - MMJJ_RS03365 0.50 +1.4 637,903 + MMJJ_RS03365 0.51 +2.5 637,907 + MMJJ_RS03365 0.52 -2.2 637,936 - MMJJ_RS03365 0.54 +0.4 637,954 - MMJJ_RS03365 0.55 +1.4 637,955 + MMJJ_RS03365 0.55 -2.0 637,959 + MMJJ_RS03365 0.55 +1.8 638,001 - MMJJ_RS03365 0.58 +1.3 638,005 - MMJJ_RS03365 0.58 -2.0 638,005 - MMJJ_RS03365 0.58 +2.6 638,005 - MMJJ_RS03365 0.58 -1.8 638,006 + MMJJ_RS03365 0.58 -0.5 638,008 + MMJJ_RS03365 0.58 -1.9 638,051 + MMJJ_RS03365 0.61 +3.0 638,051 + MMJJ_RS03365 0.61 +1.4 638,054 - MMJJ_RS03365 0.62 -2.7 638,069 + MMJJ_RS03365 0.63 -1.8 638,098 + MMJJ_RS03365 0.65 +0.8 638,098 + MMJJ_RS03365 0.65 -0.6
Or see this region's nucleotide sequence