Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03330 and MMJJ_RS03335 are separated by 11 nucleotides MMJJ_RS03335 and MMJJ_RS03340 are separated by 73 nucleotides MMJJ_RS03340 and MMJJ_RS03345 are separated by 9 nucleotides MMJJ_RS03345 and MMJJ_RS03350 overlap by 4 nucleotides MMJJ_RS03350 and MMJJ_RS03355 are separated by 195 nucleotides
MMJJ_RS03330: MMJJ_RS03330 - hypothetical protein, at 634,295 to 634,879
_RS03330
MMJJ_RS03335: MMJJ_RS03335 - hypothetical protein, at 634,891 to 635,184
_RS03335
MMJJ_RS03340: MMJJ_RS03340 - hypothetical protein, at 635,258 to 635,644
_RS03340
MMJJ_RS03345: MMJJ_RS03345 - hypothetical protein, at 635,654 to 635,863
_RS03345
MMJJ_RS03350: MMJJ_RS03350 - hypothetical protein, at 635,860 to 636,087
_RS03350
MMJJ_RS03355: MMJJ_RS03355 - hypothetical protein, at 636,283 to 636,924
_RS03355
Position (kb) 635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 634.661 kb on + strand, within MMJJ_RS03330 at 634.661 kb on + strand, within MMJJ_RS03330 at 634.718 kb on - strand, within MMJJ_RS03330 at 634.719 kb on + strand, within MMJJ_RS03330 at 634.719 kb on + strand, within MMJJ_RS03330 at 634.727 kb on + strand, within MMJJ_RS03330 at 634.727 kb on + strand, within MMJJ_RS03330 at 634.769 kb on - strand, within MMJJ_RS03330 at 634.770 kb on + strand, within MMJJ_RS03330 at 634.770 kb on + strand, within MMJJ_RS03330 at 634.779 kb on + strand, within MMJJ_RS03330 at 634.779 kb on + strand, within MMJJ_RS03330 at 634.779 kb on + strand, within MMJJ_RS03330 at 634.811 kb on - strand, within MMJJ_RS03330 at 634.812 kb on + strand, within MMJJ_RS03330 at 634.821 kb on + strand at 634.872 kb on + strand at 634.880 kb on + strand at 634.882 kb on + strand at 634.907 kb on + strand at 634.909 kb on - strand at 634.970 kb on - strand, within MMJJ_RS03335 at 635.057 kb on - strand, within MMJJ_RS03335 at 635.058 kb on + strand, within MMJJ_RS03335 at 635.058 kb on + strand, within MMJJ_RS03335 at 635.104 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.121 kb on - strand, within MMJJ_RS03335 at 635.122 kb on + strand, within MMJJ_RS03335 at 635.122 kb on + strand, within MMJJ_RS03335 at 635.122 kb on + strand, within MMJJ_RS03335 at 635.123 kb on - strand, within MMJJ_RS03335 at 635.123 kb on - strand, within MMJJ_RS03335 at 635.124 kb on + strand, within MMJJ_RS03335 at 635.124 kb on + strand, within MMJJ_RS03335 at 635.124 kb on + strand, within MMJJ_RS03335 at 635.153 kb on + strand, within MMJJ_RS03335 at 635.185 kb on + strand at 635.185 kb on + strand at 635.234 kb on + strand at 635.234 kb on + strand at 635.234 kb on + strand at 635.235 kb on - strand at 635.257 kb on + strand at 635.304 kb on - strand, within MMJJ_RS03340 at 635.304 kb on - strand, within MMJJ_RS03340 at 635.305 kb on + strand, within MMJJ_RS03340 at 635.305 kb on + strand, within MMJJ_RS03340 at 635.306 kb on - strand, within MMJJ_RS03340 at 635.307 kb on + strand, within MMJJ_RS03340 at 635.307 kb on + strand, within MMJJ_RS03340 at 635.330 kb on - strand, within MMJJ_RS03340 at 635.372 kb on - strand, within MMJJ_RS03340 at 635.373 kb on + strand, within MMJJ_RS03340 at 635.373 kb on + strand, within MMJJ_RS03340 at 635.396 kb on - strand, within MMJJ_RS03340 at 635.397 kb on + strand, within MMJJ_RS03340 at 635.397 kb on + strand, within MMJJ_RS03340 at 635.408 kb on + strand, within MMJJ_RS03340 at 635.497 kb on + strand, within MMJJ_RS03340 at 635.587 kb on + strand, within MMJJ_RS03340 at 635.595 kb on + strand, within MMJJ_RS03340 at 635.595 kb on + strand, within MMJJ_RS03340 at 635.617 kb on - strand at 635.656 kb on + strand at 635.671 kb on + strand at 635.671 kb on + strand at 635.696 kb on - strand, within MMJJ_RS03345 at 635.722 kb on - strand, within MMJJ_RS03345 at 635.723 kb on + strand, within MMJJ_RS03345 at 635.737 kb on - strand, within MMJJ_RS03345 at 635.738 kb on + strand, within MMJJ_RS03345 at 635.763 kb on - strand, within MMJJ_RS03345 at 635.763 kb on - strand, within MMJJ_RS03345 at 635.763 kb on - strand, within MMJJ_RS03345 at 635.764 kb on + strand, within MMJJ_RS03345 at 635.764 kb on + strand, within MMJJ_RS03345 at 635.771 kb on + strand, within MMJJ_RS03345 at 635.813 kb on - strand, within MMJJ_RS03345 at 635.857 kb on - strand at 635.954 kb on - strand, within MMJJ_RS03350 at 635.992 kb on - strand, within MMJJ_RS03350 at 636.000 kb on - strand, within MMJJ_RS03350 at 636.169 kb on - strand at 636.169 kb on - strand at 636.173 kb on + strand at 636.178 kb on + strand at 636.284 kb on - strand at 636.284 kb on - strand at 636.294 kb on - strand at 636.294 kb on - strand at 636.301 kb on - strand at 636.306 kb on - strand at 636.325 kb on - strand at 636.325 kb on - strand at 636.326 kb on + strand at 636.328 kb on + strand at 636.328 kb on + strand at 636.366 kb on - strand, within MMJJ_RS03355 at 636.367 kb on + strand, within MMJJ_RS03355 at 636.375 kb on - strand, within MMJJ_RS03355 at 636.433 kb on + strand, within MMJJ_RS03355 at 636.474 kb on - strand at 636.499 kb on - strand, within MMJJ_RS03355 at 636.500 kb on + strand, within MMJJ_RS03355 at 636.522 kb on - strand, within MMJJ_RS03355 at 636.549 kb on - strand, within MMJJ_RS03355 at 636.549 kb on - strand, within MMJJ_RS03355 at 636.550 kb on + strand, within MMJJ_RS03355 at 636.633 kb on - strand, within MMJJ_RS03355 at 636.633 kb on - strand, within MMJJ_RS03355 at 636.637 kb on - strand, within MMJJ_RS03355 at 636.637 kb on - strand, within MMJJ_RS03355 at 636.654 kb on - strand, within MMJJ_RS03355 at 636.655 kb on + strand, within MMJJ_RS03355 at 636.676 kb on - strand, within MMJJ_RS03355 at 636.677 kb on + strand, within MMJJ_RS03355 at 636.679 kb on - strand, within MMJJ_RS03355 at 636.684 kb on - strand, within MMJJ_RS03355 at 636.684 kb on - strand, within MMJJ_RS03355 at 636.685 kb on + strand, within MMJJ_RS03355 at 636.690 kb on + strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.694 kb on - strand, within MMJJ_RS03355 at 636.712 kb on + strand, within MMJJ_RS03355 at 636.715 kb on - strand, within MMJJ_RS03355 at 636.715 kb on - strand, within MMJJ_RS03355 at 636.724 kb on + strand, within MMJJ_RS03355 at 636.774 kb on - strand, within MMJJ_RS03355 at 636.784 kb on - strand, within MMJJ_RS03355 at 636.792 kb on - strand, within MMJJ_RS03355 at 636.831 kb on - strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.832 kb on + strand, within MMJJ_RS03355 at 636.849 kb on - strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355 at 636.850 kb on + strand, within MMJJ_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 634,661 + MMJJ_RS03330 0.63 -1.8 634,661 + MMJJ_RS03330 0.63 +0.6 634,718 - MMJJ_RS03330 0.72 -0.4 634,719 + MMJJ_RS03330 0.72 +1.0 634,719 + MMJJ_RS03330 0.72 +1.9 634,727 + MMJJ_RS03330 0.74 +0.4 634,727 + MMJJ_RS03330 0.74 -2.3 634,769 - MMJJ_RS03330 0.81 +2.2 634,770 + MMJJ_RS03330 0.81 -0.2 634,770 + MMJJ_RS03330 0.81 +1.5 634,779 + MMJJ_RS03330 0.83 -0.0 634,779 + MMJJ_RS03330 0.83 -1.0 634,779 + MMJJ_RS03330 0.83 +1.3 634,811 - MMJJ_RS03330 0.88 +1.2 634,812 + MMJJ_RS03330 0.88 +2.0 634,821 + -2.1 634,872 + -2.2 634,880 + -2.2 634,882 + +2.1 634,907 + +0.7 634,909 - -2.2 634,970 - MMJJ_RS03335 0.27 -1.7 635,057 - MMJJ_RS03335 0.56 +0.6 635,058 + MMJJ_RS03335 0.57 +2.4 635,058 + MMJJ_RS03335 0.57 -1.4 635,104 - MMJJ_RS03335 0.72 +2.4 635,121 - MMJJ_RS03335 0.78 -1.5 635,121 - MMJJ_RS03335 0.78 -3.1 635,121 - MMJJ_RS03335 0.78 +1.4 635,121 - MMJJ_RS03335 0.78 -0.6 635,121 - MMJJ_RS03335 0.78 -3.2 635,122 + MMJJ_RS03335 0.79 -2.1 635,122 + MMJJ_RS03335 0.79 -2.9 635,122 + MMJJ_RS03335 0.79 -2.4 635,123 - MMJJ_RS03335 0.79 -0.6 635,123 - MMJJ_RS03335 0.79 -1.1 635,124 + MMJJ_RS03335 0.79 -1.7 635,124 + MMJJ_RS03335 0.79 +0.9 635,124 + MMJJ_RS03335 0.79 +0.1 635,153 + MMJJ_RS03335 0.89 -3.2 635,185 + -0.6 635,185 + +0.4 635,234 + +1.9 635,234 + +2.0 635,234 + +1.4 635,235 - +0.3 635,257 + -1.9 635,304 - MMJJ_RS03340 0.12 -1.8 635,304 - MMJJ_RS03340 0.12 -0.0 635,305 + MMJJ_RS03340 0.12 -3.0 635,305 + MMJJ_RS03340 0.12 -1.7 635,306 - MMJJ_RS03340 0.12 +2.7 635,307 + MMJJ_RS03340 0.13 +1.0 635,307 + MMJJ_RS03340 0.13 -0.2 635,330 - MMJJ_RS03340 0.19 -0.5 635,372 - MMJJ_RS03340 0.29 +1.9 635,373 + MMJJ_RS03340 0.30 +1.6 635,373 + MMJJ_RS03340 0.30 -0.2 635,396 - MMJJ_RS03340 0.36 +5.1 635,397 + MMJJ_RS03340 0.36 -2.1 635,397 + MMJJ_RS03340 0.36 +3.5 635,408 + MMJJ_RS03340 0.39 +2.7 635,497 + MMJJ_RS03340 0.62 -1.8 635,587 + MMJJ_RS03340 0.85 +0.6 635,595 + MMJJ_RS03340 0.87 -3.0 635,595 + MMJJ_RS03340 0.87 -3.0 635,617 - -2.1 635,656 + +1.0 635,671 + -2.8 635,671 + +0.0 635,696 - MMJJ_RS03345 0.20 +0.8 635,722 - MMJJ_RS03345 0.32 -1.1 635,723 + MMJJ_RS03345 0.33 +3.1 635,737 - MMJJ_RS03345 0.40 +5.0 635,738 + MMJJ_RS03345 0.40 +0.4 635,763 - MMJJ_RS03345 0.52 +0.8 635,763 - MMJJ_RS03345 0.52 +2.1 635,763 - MMJJ_RS03345 0.52 +0.5 635,764 + MMJJ_RS03345 0.52 +3.0 635,764 + MMJJ_RS03345 0.52 +1.2 635,771 + MMJJ_RS03345 0.56 -1.6 635,813 - MMJJ_RS03345 0.76 +0.4 635,857 - +0.7 635,954 - MMJJ_RS03350 0.41 -1.7 635,992 - MMJJ_RS03350 0.58 +1.4 636,000 - MMJJ_RS03350 0.61 +0.9 636,169 - +1.4 636,169 - +1.4 636,173 + +0.2 636,178 + +1.4 636,284 - +0.1 636,284 - +0.3 636,294 - +1.4 636,294 - +2.8 636,301 - -1.6 636,306 - +0.4 636,325 - -0.4 636,325 - +0.8 636,326 + -1.5 636,328 + -0.6 636,328 + +2.8 636,366 - MMJJ_RS03355 0.13 -1.0 636,367 + MMJJ_RS03355 0.13 -1.2 636,375 - MMJJ_RS03355 0.14 +3.7 636,433 + MMJJ_RS03355 0.23 +2.1 636,474 - +1.4 636,499 - MMJJ_RS03355 0.34 +3.3 636,500 + MMJJ_RS03355 0.34 -2.9 636,522 - MMJJ_RS03355 0.37 -0.3 636,549 - MMJJ_RS03355 0.41 +0.5 636,549 - MMJJ_RS03355 0.41 -0.3 636,550 + MMJJ_RS03355 0.42 -1.4 636,633 - MMJJ_RS03355 0.55 -3.4 636,633 - MMJJ_RS03355 0.55 +2.7 636,637 - MMJJ_RS03355 0.55 +0.9 636,637 - MMJJ_RS03355 0.55 +0.4 636,654 - MMJJ_RS03355 0.58 -2.2 636,655 + MMJJ_RS03355 0.58 -0.2 636,676 - MMJJ_RS03355 0.61 -0.8 636,677 + MMJJ_RS03355 0.61 -1.4 636,679 - MMJJ_RS03355 0.62 +1.8 636,684 - MMJJ_RS03355 0.62 -1.5 636,684 - MMJJ_RS03355 0.62 +0.4 636,685 + MMJJ_RS03355 0.63 -1.7 636,690 + MMJJ_RS03355 0.63 +3.3 636,694 - MMJJ_RS03355 0.64 -1.8 636,694 - MMJJ_RS03355 0.64 +2.0 636,694 - MMJJ_RS03355 0.64 +2.2 636,712 + MMJJ_RS03355 0.67 +3.7 636,715 - MMJJ_RS03355 0.67 -1.4 636,715 - MMJJ_RS03355 0.67 +2.8 636,724 + MMJJ_RS03355 0.69 -1.5 636,774 - MMJJ_RS03355 0.76 +1.5 636,784 - MMJJ_RS03355 0.78 -2.0 636,792 - MMJJ_RS03355 0.79 +1.4 636,831 - MMJJ_RS03355 0.85 -0.4 636,832 + MMJJ_RS03355 0.86 -2.3 636,832 + MMJJ_RS03355 0.86 +0.4 636,832 + MMJJ_RS03355 0.86 -2.3 636,849 - MMJJ_RS03355 0.88 +1.2 636,850 + MMJJ_RS03355 0.88 -0.9 636,850 + MMJJ_RS03355 0.88 -1.0 636,850 + MMJJ_RS03355 0.88 +1.0
Or see this region's nucleotide sequence