Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03305 and MMJJ_RS03310 are separated by 14 nucleotides MMJJ_RS03310 and MMJJ_RS03315 are separated by 211 nucleotides
MMJJ_RS03305: MMJJ_RS03305 - zincin-like metallopeptidase domain-containing protein, at 627,263 to 629,320
_RS03305
MMJJ_RS03310: MMJJ_RS03310 - hypothetical protein, at 629,335 to 629,553
_RS03310
MMJJ_RS03315: MMJJ_RS03315 - hypothetical protein, at 629,765 to 631,825
_RS03315
Position (kb) 629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 628.373 kb on + strand, within MMJJ_RS03305 at 628.426 kb on + strand, within MMJJ_RS03305 at 628.430 kb on + strand, within MMJJ_RS03305 at 628.482 kb on - strand, within MMJJ_RS03305 at 628.483 kb on + strand, within MMJJ_RS03305 at 628.506 kb on - strand, within MMJJ_RS03305 at 628.506 kb on - strand, within MMJJ_RS03305 at 628.506 kb on - strand, within MMJJ_RS03305 at 628.507 kb on + strand, within MMJJ_RS03305 at 628.509 kb on - strand, within MMJJ_RS03305 at 628.607 kb on + strand, within MMJJ_RS03305 at 628.614 kb on - strand, within MMJJ_RS03305 at 628.929 kb on - strand, within MMJJ_RS03305 at 628.985 kb on - strand, within MMJJ_RS03305 at 628.986 kb on + strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.031 kb on - strand, within MMJJ_RS03305 at 629.032 kb on + strand, within MMJJ_RS03305 at 629.041 kb on + strand, within MMJJ_RS03305 at 629.051 kb on - strand, within MMJJ_RS03305 at 629.052 kb on + strand, within MMJJ_RS03305 at 629.058 kb on - strand, within MMJJ_RS03305 at 629.058 kb on - strand, within MMJJ_RS03305 at 629.089 kb on - strand, within MMJJ_RS03305 at 629.111 kb on + strand, within MMJJ_RS03305 at 629.126 kb on - strand at 629.165 kb on - strand at 629.167 kb on - strand at 629.167 kb on - strand at 629.168 kb on + strand at 629.168 kb on + strand at 629.168 kb on + strand at 629.168 kb on + strand at 629.222 kb on + strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.227 kb on - strand at 629.228 kb on + strand at 629.228 kb on + strand at 629.228 kb on + strand at 629.230 kb on + strand at 629.235 kb on - strand at 629.252 kb on - strand at 629.312 kb on - strand at 629.313 kb on + strand at 629.318 kb on - strand at 629.324 kb on + strand at 629.331 kb on - strand at 629.367 kb on + strand, within MMJJ_RS03310 at 629.384 kb on - strand, within MMJJ_RS03310 at 629.385 kb on + strand, within MMJJ_RS03310 at 629.427 kb on - strand, within MMJJ_RS03310 at 629.436 kb on - strand, within MMJJ_RS03310 at 629.436 kb on - strand, within MMJJ_RS03310 at 629.448 kb on + strand, within MMJJ_RS03310 at 629.503 kb on - strand, within MMJJ_RS03310 at 629.503 kb on - strand, within MMJJ_RS03310 at 629.504 kb on + strand, within MMJJ_RS03310 at 629.505 kb on - strand at 629.550 kb on + strand at 629.551 kb on - strand at 629.552 kb on + strand at 629.590 kb on + strand at 629.590 kb on + strand at 629.630 kb on - strand at 629.633 kb on + strand at 629.644 kb on + strand at 629.804 kb on - strand at 629.813 kb on + strand at 629.861 kb on - strand at 629.861 kb on - strand at 629.861 kb on - strand at 629.861 kb on - strand at 629.862 kb on + strand at 629.862 kb on + strand at 629.864 kb on - strand at 629.864 kb on - strand at 629.873 kb on - strand at 629.873 kb on - strand at 629.899 kb on - strand at 629.907 kb on + strand at 629.910 kb on + strand at 629.968 kb on - strand at 629.997 kb on + strand, within MMJJ_RS03315 at 630.021 kb on - strand, within MMJJ_RS03315 at 630.021 kb on - strand, within MMJJ_RS03315 at 630.021 kb on - strand, within MMJJ_RS03315 at 630.025 kb on + strand, within MMJJ_RS03315 at 630.067 kb on + strand, within MMJJ_RS03315 at 630.067 kb on + strand, within MMJJ_RS03315 at 630.067 kb on + strand, within MMJJ_RS03315 at 630.069 kb on - strand, within MMJJ_RS03315 at 630.070 kb on + strand, within MMJJ_RS03315 at 630.094 kb on - strand, within MMJJ_RS03315 at 630.095 kb on + strand, within MMJJ_RS03315 at 630.110 kb on + strand, within MMJJ_RS03315 at 630.319 kb on - strand, within MMJJ_RS03315 at 630.320 kb on + strand, within MMJJ_RS03315 at 630.320 kb on + strand at 630.324 kb on + strand, within MMJJ_RS03315 at 630.392 kb on + strand, within MMJJ_RS03315 at 630.412 kb on - strand, within MMJJ_RS03315 at 630.422 kb on + strand, within MMJJ_RS03315 at 630.437 kb on - strand, within MMJJ_RS03315 at 630.438 kb on + strand, within MMJJ_RS03315 at 630.438 kb on + strand, within MMJJ_RS03315 at 630.465 kb on - strand, within MMJJ_RS03315 at 630.466 kb on + strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.467 kb on - strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.468 kb on + strand, within MMJJ_RS03315 at 630.469 kb on - strand, within MMJJ_RS03315 at 630.470 kb on + strand, within MMJJ_RS03315 at 630.493 kb on - strand, within MMJJ_RS03315 at 630.494 kb on + strand, within MMJJ_RS03315 at 630.494 kb on + strand, within MMJJ_RS03315 at 630.496 kb on + strand, within MMJJ_RS03315 at 630.530 kb on + strand, within MMJJ_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 628,373 + MMJJ_RS03305 0.54 +0.2 628,426 + MMJJ_RS03305 0.57 -2.7 628,430 + MMJJ_RS03305 0.57 -0.8 628,482 - MMJJ_RS03305 0.59 -0.7 628,483 + MMJJ_RS03305 0.59 -2.3 628,506 - MMJJ_RS03305 0.60 -1.7 628,506 - MMJJ_RS03305 0.60 +1.5 628,506 - MMJJ_RS03305 0.60 -1.3 628,507 + MMJJ_RS03305 0.60 +2.0 628,509 - MMJJ_RS03305 0.61 +1.9 628,607 + MMJJ_RS03305 0.65 -3.3 628,614 - MMJJ_RS03305 0.66 -2.4 628,929 - MMJJ_RS03305 0.81 -0.4 628,985 - MMJJ_RS03305 0.84 -2.3 628,986 + MMJJ_RS03305 0.84 +0.5 629,031 - MMJJ_RS03305 0.86 +1.9 629,031 - MMJJ_RS03305 0.86 -0.4 629,031 - MMJJ_RS03305 0.86 +0.2 629,031 - MMJJ_RS03305 0.86 +3.6 629,032 + MMJJ_RS03305 0.86 -2.2 629,041 + MMJJ_RS03305 0.86 +0.9 629,051 - MMJJ_RS03305 0.87 -3.8 629,052 + MMJJ_RS03305 0.87 +0.4 629,058 - MMJJ_RS03305 0.87 +2.0 629,058 - MMJJ_RS03305 0.87 +0.7 629,089 - MMJJ_RS03305 0.89 +0.1 629,111 + MMJJ_RS03305 0.90 +0.4 629,126 - -0.9 629,165 - -1.5 629,167 - -4.1 629,167 - +0.5 629,168 + +1.0 629,168 + -3.2 629,168 + -1.2 629,168 + +5.0 629,222 + -2.7 629,227 - +1.1 629,227 - -0.6 629,227 - -2.9 629,227 - -0.7 629,227 - +0.2 629,227 - -1.7 629,228 + +2.0 629,228 + -0.2 629,228 + +1.2 629,230 + +0.8 629,235 - -1.8 629,252 - +0.8 629,312 - -0.4 629,313 + +5.6 629,318 - -0.5 629,324 + +2.0 629,331 - -2.0 629,367 + MMJJ_RS03310 0.15 -0.2 629,384 - MMJJ_RS03310 0.22 -0.8 629,385 + MMJJ_RS03310 0.23 +0.3 629,427 - MMJJ_RS03310 0.42 -1.1 629,436 - MMJJ_RS03310 0.46 +0.3 629,436 - MMJJ_RS03310 0.46 -0.7 629,448 + MMJJ_RS03310 0.52 +0.3 629,503 - MMJJ_RS03310 0.77 -0.2 629,503 - MMJJ_RS03310 0.77 -1.7 629,504 + MMJJ_RS03310 0.77 -1.0 629,505 - +2.3 629,550 + +2.8 629,551 - +2.5 629,552 + -3.2 629,590 + +2.3 629,590 + +3.0 629,630 - -1.5 629,633 + +0.9 629,644 + +2.4 629,804 - -1.1 629,813 + -0.5 629,861 - +3.1 629,861 - -1.1 629,861 - -0.0 629,861 - -3.9 629,862 + +0.3 629,862 + +0.4 629,864 - +2.2 629,864 - +1.9 629,873 - -1.0 629,873 - +1.6 629,899 - -1.7 629,907 + +0.9 629,910 + -2.8 629,968 - -4.3 629,997 + MMJJ_RS03315 0.11 +0.2 630,021 - MMJJ_RS03315 0.12 +1.1 630,021 - MMJJ_RS03315 0.12 -2.0 630,021 - MMJJ_RS03315 0.12 -2.5 630,025 + MMJJ_RS03315 0.13 +1.2 630,067 + MMJJ_RS03315 0.15 +1.3 630,067 + MMJJ_RS03315 0.15 -3.1 630,067 + MMJJ_RS03315 0.15 -1.2 630,069 - MMJJ_RS03315 0.15 -2.1 630,070 + MMJJ_RS03315 0.15 +1.1 630,094 - MMJJ_RS03315 0.16 -1.9 630,095 + MMJJ_RS03315 0.16 -0.1 630,110 + MMJJ_RS03315 0.17 +0.9 630,319 - MMJJ_RS03315 0.27 -0.5 630,320 + MMJJ_RS03315 0.27 +0.6 630,320 + +2.3 630,324 + MMJJ_RS03315 0.27 +2.4 630,392 + MMJJ_RS03315 0.30 +1.0 630,412 - MMJJ_RS03315 0.31 -2.6 630,422 + MMJJ_RS03315 0.32 -2.7 630,437 - MMJJ_RS03315 0.33 -0.7 630,438 + MMJJ_RS03315 0.33 +0.3 630,438 + MMJJ_RS03315 0.33 -4.1 630,465 - MMJJ_RS03315 0.34 -1.7 630,466 + MMJJ_RS03315 0.34 +0.8 630,467 - MMJJ_RS03315 0.34 -1.2 630,467 - MMJJ_RS03315 0.34 +1.3 630,467 - MMJJ_RS03315 0.34 +0.3 630,467 - MMJJ_RS03315 0.34 +0.2 630,467 - MMJJ_RS03315 0.34 -0.9 630,468 + MMJJ_RS03315 0.34 -1.1 630,468 + MMJJ_RS03315 0.34 -0.9 630,468 + MMJJ_RS03315 0.34 -0.6 630,468 + MMJJ_RS03315 0.34 -1.5 630,468 + MMJJ_RS03315 0.34 -1.6 630,468 + MMJJ_RS03315 0.34 +0.1 630,469 - MMJJ_RS03315 0.34 +0.0 630,470 + MMJJ_RS03315 0.34 -0.7 630,493 - MMJJ_RS03315 0.35 -1.1 630,494 + MMJJ_RS03315 0.35 +3.3 630,494 + MMJJ_RS03315 0.35 -0.4 630,496 + MMJJ_RS03315 0.35 -2.8 630,530 + MMJJ_RS03315 0.37 +0.3
Or see this region's nucleotide sequence