Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03295

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03290 and MMJJ_RS03295 are separated by 28 nucleotidesMMJJ_RS03295 and MMJJ_RS03300 are separated by 5 nucleotides MMJJ_RS03290: MMJJ_RS03290 - amidohydrolase, at 622,964 to 624,244 _RS03290 MMJJ_RS03295: MMJJ_RS03295 - PHP domain-containing protein, at 624,273 to 624,917 _RS03295 MMJJ_RS03300: MMJJ_RS03300 - RNA ligase, at 624,923 to 626,107 _RS03300 Position (kb) 624 625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 623.282 kb on - strandat 623.348 kb on - strand, within MMJJ_RS03290at 623.377 kb on - strand, within MMJJ_RS03290at 623.377 kb on - strand, within MMJJ_RS03290at 623.406 kb on - strand, within MMJJ_RS03290at 623.411 kb on - strand, within MMJJ_RS03290at 623.422 kb on + strand, within MMJJ_RS03290at 623.449 kb on - strand, within MMJJ_RS03290at 623.450 kb on + strand, within MMJJ_RS03290at 623.451 kb on - strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.452 kb on + strand, within MMJJ_RS03290at 623.456 kb on + strand, within MMJJ_RS03290at 623.456 kb on + strand, within MMJJ_RS03290at 623.463 kb on - strand, within MMJJ_RS03290at 623.511 kb on - strand, within MMJJ_RS03290at 623.518 kb on + strand, within MMJJ_RS03290at 623.541 kb on + strand, within MMJJ_RS03290at 623.591 kb on - strand, within MMJJ_RS03290at 623.592 kb on + strand, within MMJJ_RS03290at 623.592 kb on + strand, within MMJJ_RS03290at 623.598 kb on - strand, within MMJJ_RS03290at 623.598 kb on - strand, within MMJJ_RS03290at 623.598 kb on - strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.599 kb on + strand, within MMJJ_RS03290at 623.602 kb on - strand, within MMJJ_RS03290at 623.603 kb on + strand, within MMJJ_RS03290at 623.603 kb on + strand, within MMJJ_RS03290at 623.637 kb on - strand, within MMJJ_RS03290at 623.638 kb on + strand, within MMJJ_RS03290at 623.673 kb on - strand, within MMJJ_RS03290at 623.678 kb on - strand, within MMJJ_RS03290at 623.679 kb on + strand, within MMJJ_RS03290at 623.679 kb on + strand, within MMJJ_RS03290at 623.679 kb on + strand, within MMJJ_RS03290at 623.826 kb on - strand, within MMJJ_RS03290at 623.826 kb on - strand, within MMJJ_RS03290at 623.827 kb on + strand, within MMJJ_RS03290at 623.827 kb on + strand, within MMJJ_RS03290at 623.852 kb on - strand, within MMJJ_RS03290at 623.899 kb on - strand, within MMJJ_RS03290at 623.899 kb on - strand, within MMJJ_RS03290at 623.909 kb on + strand, within MMJJ_RS03290at 623.914 kb on - strand, within MMJJ_RS03290at 623.940 kb on - strand, within MMJJ_RS03290at 623.940 kb on - strand, within MMJJ_RS03290at 623.944 kb on - strand, within MMJJ_RS03290at 623.945 kb on + strand, within MMJJ_RS03290at 624.010 kb on - strand, within MMJJ_RS03290at 624.038 kb on + strand, within MMJJ_RS03290at 624.040 kb on - strand, within MMJJ_RS03290at 624.070 kb on + strand, within MMJJ_RS03290at 624.082 kb on - strand, within MMJJ_RS03290at 624.085 kb on - strand, within MMJJ_RS03290at 624.087 kb on - strand, within MMJJ_RS03290at 624.102 kb on - strand, within MMJJ_RS03290at 624.102 kb on - strand, within MMJJ_RS03290at 624.102 kb on - strand, within MMJJ_RS03290at 624.103 kb on + strand, within MMJJ_RS03290at 624.103 kb on + strand, within MMJJ_RS03290at 624.103 kb on + strand, within MMJJ_RS03290at 624.135 kb on - strandat 624.138 kb on - strandat 624.151 kb on - strandat 624.151 kb on - strandat 624.151 kb on - strandat 624.152 kb on + strandat 624.195 kb on - strandat 624.195 kb on - strandat 624.195 kb on - strandat 624.196 kb on + strandat 624.196 kb on + strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.200 kb on + strandat 624.202 kb on - strandat 624.214 kb on - strandat 624.214 kb on - strandat 624.214 kb on - strandat 624.215 kb on + strandat 624.295 kb on - strandat 624.295 kb on - strandat 624.295 kb on - strandat 624.295 kb on - strandat 624.296 kb on + strandat 624.419 kb on + strand, within MMJJ_RS03295at 624.496 kb on - strand, within MMJJ_RS03295at 624.540 kb on - strand, within MMJJ_RS03295at 624.541 kb on + strand, within MMJJ_RS03295at 624.584 kb on - strand, within MMJJ_RS03295at 624.584 kb on - strand, within MMJJ_RS03295at 624.616 kb on - strand, within MMJJ_RS03295at 624.617 kb on + strand, within MMJJ_RS03295at 624.631 kb on - strand, within MMJJ_RS03295at 624.631 kb on - strand, within MMJJ_RS03295at 624.631 kb on - strand, within MMJJ_RS03295at 624.632 kb on + strand, within MMJJ_RS03295at 624.632 kb on + strand, within MMJJ_RS03295at 624.632 kb on + strand, within MMJJ_RS03295at 624.640 kb on - strand, within MMJJ_RS03295at 624.641 kb on + strand, within MMJJ_RS03295at 624.641 kb on + strand, within MMJJ_RS03295at 624.641 kb on + strand, within MMJJ_RS03295at 624.641 kb on + strand, within MMJJ_RS03295at 624.641 kb on + strand, within MMJJ_RS03295at 624.642 kb on - strand, within MMJJ_RS03295at 624.642 kb on - strand, within MMJJ_RS03295at 624.643 kb on + strand, within MMJJ_RS03295at 624.643 kb on + strand, within MMJJ_RS03295at 624.644 kb on - strand, within MMJJ_RS03295at 624.684 kb on - strand, within MMJJ_RS03295at 624.685 kb on + strand, within MMJJ_RS03295at 624.701 kb on - strand, within MMJJ_RS03295at 624.702 kb on + strand, within MMJJ_RS03295at 624.752 kb on + strand, within MMJJ_RS03295at 624.762 kb on - strand, within MMJJ_RS03295at 624.787 kb on - strand, within MMJJ_RS03295at 624.788 kb on + strand, within MMJJ_RS03295at 624.792 kb on + strand, within MMJJ_RS03295at 624.844 kb on + strand, within MMJJ_RS03295at 624.844 kb on + strand, within MMJJ_RS03295at 624.877 kb on - strandat 624.877 kb on - strandat 624.877 kb on - strandat 624.877 kb on - strandat 624.877 kb on - strandat 624.878 kb on + strandat 624.878 kb on + strandat 624.878 kb on + strandat 624.878 kb on + strandat 624.878 kb on + strandat 624.884 kb on - strandat 624.885 kb on + strandat 624.910 kb on - strandat 624.936 kb on + strandat 624.936 kb on + strandat 624.949 kb on - strandat 624.975 kb on - strandat 624.976 kb on + strandat 625.046 kb on + strand, within MMJJ_RS03300at 625.144 kb on - strand, within MMJJ_RS03300at 625.147 kb on - strand, within MMJJ_RS03300at 625.203 kb on + strand, within MMJJ_RS03300at 625.244 kb on - strand, within MMJJ_RS03300at 625.251 kb on - strand, within MMJJ_RS03300at 625.321 kb on - strand, within MMJJ_RS03300at 625.322 kb on + strand, within MMJJ_RS03300at 625.343 kb on + strand, within MMJJ_RS03300at 625.346 kb on + strand, within MMJJ_RS03300at 625.375 kb on + strand, within MMJJ_RS03300at 625.402 kb on + strand, within MMJJ_RS03300at 625.413 kb on + strand, within MMJJ_RS03300at 625.424 kb on - strand, within MMJJ_RS03300at 625.424 kb on - strand, within MMJJ_RS03300at 625.424 kb on - strand, within MMJJ_RS03300at 625.427 kb on - strand, within MMJJ_RS03300at 625.448 kb on - strand, within MMJJ_RS03300at 625.448 kb on - strand, within MMJJ_RS03300at 625.449 kb on + strand, within MMJJ_RS03300at 625.487 kb on + strand, within MMJJ_RS03300at 625.495 kb on - strand, within MMJJ_RS03300at 625.512 kb on - strand, within MMJJ_RS03300at 625.514 kb on - strand, within MMJJ_RS03300at 625.514 kb on - strand, within MMJJ_RS03300at 625.514 kb on - strand, within MMJJ_RS03300at 625.515 kb on + strand, within MMJJ_RS03300at 625.515 kb on + strand, within MMJJ_RS03300at 625.547 kb on + strand, within MMJJ_RS03300at 625.558 kb on + strand, within MMJJ_RS03300at 625.582 kb on - strand, within MMJJ_RS03300at 625.620 kb on - strand, within MMJJ_RS03300at 625.644 kb on - strand, within MMJJ_RS03300at 625.644 kb on - strand, within MMJJ_RS03300at 625.686 kb on + strand, within MMJJ_RS03300at 625.733 kb on - strand, within MMJJ_RS03300at 625.776 kb on - strand, within MMJJ_RS03300at 625.882 kb on + strand, within MMJJ_RS03300

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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623,282 - +0.3
623,348 - MMJJ_RS03290 0.30 -3.4
623,377 - MMJJ_RS03290 0.32 +0.9
623,377 - MMJJ_RS03290 0.32 +0.0
623,406 - MMJJ_RS03290 0.35 +4.2
623,411 - MMJJ_RS03290 0.35 -0.2
623,422 + MMJJ_RS03290 0.36 +4.0
623,449 - MMJJ_RS03290 0.38 -0.7
623,450 + MMJJ_RS03290 0.38 +0.3
623,451 - MMJJ_RS03290 0.38 +1.0
623,452 + MMJJ_RS03290 0.38 +2.0
623,452 + MMJJ_RS03290 0.38 +0.8
623,452 + MMJJ_RS03290 0.38 -1.9
623,452 + MMJJ_RS03290 0.38 +0.0
623,456 + MMJJ_RS03290 0.38 +4.4
623,456 + MMJJ_RS03290 0.38 +0.3
623,463 - MMJJ_RS03290 0.39 -0.7
623,511 - MMJJ_RS03290 0.43 -0.8
623,518 + MMJJ_RS03290 0.43 -3.0
623,541 + MMJJ_RS03290 0.45 +2.4
623,591 - MMJJ_RS03290 0.49 +0.3
623,592 + MMJJ_RS03290 0.49 -0.6
623,592 + MMJJ_RS03290 0.49 -2.0
623,598 - MMJJ_RS03290 0.49 -0.8
623,598 - MMJJ_RS03290 0.49 +0.8
623,598 - MMJJ_RS03290 0.49 +2.2
623,599 + MMJJ_RS03290 0.50 +2.6
623,599 + MMJJ_RS03290 0.50 -0.5
623,599 + MMJJ_RS03290 0.50 -1.1
623,599 + MMJJ_RS03290 0.50 +0.6
623,602 - MMJJ_RS03290 0.50 +1.1
623,603 + MMJJ_RS03290 0.50 -2.7
623,603 + MMJJ_RS03290 0.50 -0.7
623,637 - MMJJ_RS03290 0.53 -0.2
623,638 + MMJJ_RS03290 0.53 +1.2
623,673 - MMJJ_RS03290 0.55 -0.8
623,678 - MMJJ_RS03290 0.56 -0.1
623,679 + MMJJ_RS03290 0.56 +1.3
623,679 + MMJJ_RS03290 0.56 +0.1
623,679 + MMJJ_RS03290 0.56 +3.9
623,826 - MMJJ_RS03290 0.67 +3.6
623,826 - MMJJ_RS03290 0.67 -0.4
623,827 + MMJJ_RS03290 0.67 +2.9
623,827 + MMJJ_RS03290 0.67 +0.1
623,852 - MMJJ_RS03290 0.69 +1.9
623,899 - MMJJ_RS03290 0.73 +1.0
623,899 - MMJJ_RS03290 0.73 -3.2
623,909 + MMJJ_RS03290 0.74 -2.4
623,914 - MMJJ_RS03290 0.74 -0.9
623,940 - MMJJ_RS03290 0.76 -1.5
623,940 - MMJJ_RS03290 0.76 -2.4
623,944 - MMJJ_RS03290 0.77 -2.6
623,945 + MMJJ_RS03290 0.77 +0.6
624,010 - MMJJ_RS03290 0.82 +1.0
624,038 + MMJJ_RS03290 0.84 +1.2
624,040 - MMJJ_RS03290 0.84 -1.9
624,070 + MMJJ_RS03290 0.86 +0.7
624,082 - MMJJ_RS03290 0.87 -0.2
624,085 - MMJJ_RS03290 0.88 +1.1
624,087 - MMJJ_RS03290 0.88 +2.4
624,102 - MMJJ_RS03290 0.89 +2.6
624,102 - MMJJ_RS03290 0.89 +0.3
624,102 - MMJJ_RS03290 0.89 -0.7
624,103 + MMJJ_RS03290 0.89 +0.1
624,103 + MMJJ_RS03290 0.89 +0.3
624,103 + MMJJ_RS03290 0.89 -0.7
624,135 - -1.4
624,138 - +2.5
624,151 - +1.1
624,151 - +1.8
624,151 - -0.3
624,152 + -1.4
624,195 - -1.2
624,195 - -2.6
624,195 - -1.7
624,196 + +0.8
624,196 + +3.3
624,199 - -0.6
624,199 - -1.5
624,199 - -2.1
624,200 + +1.5
624,202 - +1.3
624,214 - -1.1
624,214 - -1.2
624,214 - -0.1
624,215 + -1.8
624,295 - +3.4
624,295 - +0.0
624,295 - +0.3
624,295 - -2.1
624,296 + -1.0
624,419 + MMJJ_RS03295 0.23 +1.3
624,496 - MMJJ_RS03295 0.35 +1.3
624,540 - MMJJ_RS03295 0.41 -0.2
624,541 + MMJJ_RS03295 0.42 -0.3
624,584 - MMJJ_RS03295 0.48 +0.8
624,584 - MMJJ_RS03295 0.48 -2.0
624,616 - MMJJ_RS03295 0.53 -1.9
624,617 + MMJJ_RS03295 0.53 +0.3
624,631 - MMJJ_RS03295 0.56 +0.8
624,631 - MMJJ_RS03295 0.56 -3.0
624,631 - MMJJ_RS03295 0.56 -0.2
624,632 + MMJJ_RS03295 0.56 -1.9
624,632 + MMJJ_RS03295 0.56 -1.0
624,632 + MMJJ_RS03295 0.56 -0.2
624,640 - MMJJ_RS03295 0.57 -0.6
624,641 + MMJJ_RS03295 0.57 -1.7
624,641 + MMJJ_RS03295 0.57 +0.8
624,641 + MMJJ_RS03295 0.57 -3.1
624,641 + MMJJ_RS03295 0.57 +0.1
624,641 + MMJJ_RS03295 0.57 -1.7
624,642 - MMJJ_RS03295 0.57 -3.1
624,642 - MMJJ_RS03295 0.57 -0.4
624,643 + MMJJ_RS03295 0.57 -0.5
624,643 + MMJJ_RS03295 0.57 -0.5
624,644 - MMJJ_RS03295 0.58 +0.1
624,684 - MMJJ_RS03295 0.64 -2.7
624,685 + MMJJ_RS03295 0.64 -2.2
624,701 - MMJJ_RS03295 0.66 -0.0
624,702 + MMJJ_RS03295 0.67 +0.3
624,752 + MMJJ_RS03295 0.74 -0.9
624,762 - MMJJ_RS03295 0.76 -0.8
624,787 - MMJJ_RS03295 0.80 -1.0
624,788 + MMJJ_RS03295 0.80 -1.7
624,792 + MMJJ_RS03295 0.80 -1.8
624,844 + MMJJ_RS03295 0.89 -0.6
624,844 + MMJJ_RS03295 0.89 -3.1
624,877 - +0.9
624,877 - -0.4
624,877 - +0.2
624,877 - +0.3
624,877 - -2.0
624,878 + -1.3
624,878 + -1.2
624,878 + -2.3
624,878 + -1.5
624,878 + -1.7
624,884 - -1.0
624,885 + -1.6
624,910 - +2.3
624,936 + +3.6
624,936 + +1.3
624,949 - +3.5
624,975 - -1.8
624,976 + +3.4
625,046 + MMJJ_RS03300 0.10 +1.4
625,144 - MMJJ_RS03300 0.19 -1.2
625,147 - MMJJ_RS03300 0.19 -2.0
625,203 + MMJJ_RS03300 0.24 +0.3
625,244 - MMJJ_RS03300 0.27 -1.8
625,251 - MMJJ_RS03300 0.28 -2.2
625,321 - MMJJ_RS03300 0.34 +2.6
625,322 + MMJJ_RS03300 0.34 +3.7
625,343 + MMJJ_RS03300 0.35 +0.2
625,346 + MMJJ_RS03300 0.36 +0.6
625,375 + MMJJ_RS03300 0.38 -0.6
625,402 + MMJJ_RS03300 0.40 +0.5
625,413 + MMJJ_RS03300 0.41 -1.1
625,424 - MMJJ_RS03300 0.42 -4.1
625,424 - MMJJ_RS03300 0.42 -2.0
625,424 - MMJJ_RS03300 0.42 +1.1
625,427 - MMJJ_RS03300 0.43 +1.8
625,448 - MMJJ_RS03300 0.44 -0.4
625,448 - MMJJ_RS03300 0.44 +3.4
625,449 + MMJJ_RS03300 0.44 +1.1
625,487 + MMJJ_RS03300 0.48 -1.9
625,495 - MMJJ_RS03300 0.48 +0.6
625,512 - MMJJ_RS03300 0.50 +0.8
625,514 - MMJJ_RS03300 0.50 +0.7
625,514 - MMJJ_RS03300 0.50 +1.3
625,514 - MMJJ_RS03300 0.50 -1.1
625,515 + MMJJ_RS03300 0.50 +2.8
625,515 + MMJJ_RS03300 0.50 +2.6
625,547 + MMJJ_RS03300 0.53 +1.5
625,558 + MMJJ_RS03300 0.54 -3.1
625,582 - MMJJ_RS03300 0.56 -2.5
625,620 - MMJJ_RS03300 0.59 +1.2
625,644 - MMJJ_RS03300 0.61 -3.2
625,644 - MMJJ_RS03300 0.61 -2.2
625,686 + MMJJ_RS03300 0.64 -2.2
625,733 - MMJJ_RS03300 0.68 -1.1
625,776 - MMJJ_RS03300 0.72 -0.6
625,882 + MMJJ_RS03300 0.81 -2.0

Or see this region's nucleotide sequence