Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03175 and MMJJ_RS03180 are separated by 10 nucleotides MMJJ_RS03180 and MMJJ_RS03185 are separated by 42 nucleotides MMJJ_RS03185 and MMJJ_RS03190 are separated by 199 nucleotides
MMJJ_RS03175: MMJJ_RS03175 - zinc metalloprotease HtpX, at 599,977 to 600,834
_RS03175
MMJJ_RS03180: MMJJ_RS03180 - pantoate kinase, at 600,845 to 601,720
_RS03180
MMJJ_RS03185: MMJJ_RS03185 - alanine--tRNA ligase, at 601,763 to 604,441
_RS03185
MMJJ_RS03190: MMJJ_RS03190 - phosphopyruvate hydratase, at 604,641 to 605,933
_RS03190
Position (kb)
601
602
603
604
605 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 600.794 kb on + strand at 600.794 kb on + strand at 600.808 kb on - strand at 600.808 kb on - strand at 600.809 kb on + strand at 600.821 kb on + strand at 600.825 kb on - strand at 600.825 kb on - strand at 600.825 kb on - strand at 600.839 kb on + strand at 600.839 kb on + strand at 600.846 kb on - strand at 601.490 kb on + strand, within MMJJ_RS03180 at 601.886 kb on - strand at 602.199 kb on + strand, within MMJJ_RS03185 at 603.581 kb on + strand, within MMJJ_RS03185 at 604.330 kb on - strand at 604.331 kb on + strand at 604.375 kb on - strand at 604.497 kb on + strand at 604.541 kb on - strand at 604.542 kb on + strand at 604.542 kb on + strand at 604.546 kb on - strand at 604.547 kb on + strand at 604.548 kb on - strand at 604.562 kb on + strand at 604.586 kb on - strand at 604.595 kb on - strand at 604.600 kb on + strand at 604.626 kb on - strand at 604.632 kb on - strand at 604.632 kb on - strand at 604.633 kb on + strand at 604.643 kb on + strand at 604.643 kb on + strand at 605.171 kb on + strand, within MMJJ_RS03190 at 605.304 kb on - strand at 605.310 kb on - strand at 605.311 kb on + strand, within MMJJ_RS03190 at 605.340 kb on - strand, within MMJJ_RS03190 at 605.360 kb on + strand, within MMJJ_RS03190
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 600,794 + -1.9 600,794 + -1.5 600,808 - -3.2 600,808 - +3.8 600,809 + -1.9 600,821 + +0.9 600,825 - -0.3 600,825 - +1.3 600,825 - +2.7 600,839 + +3.7 600,839 + -1.9 600,846 - -1.5 601,490 + MMJJ_RS03180 0.74 -1.0 601,886 - +1.3 602,199 + MMJJ_RS03185 0.16 -0.7 603,581 + MMJJ_RS03185 0.68 -1.5 604,330 - +1.3 604,331 + -0.3 604,375 - -1.7 604,497 + -0.7 604,541 - -1.6 604,542 + +1.5 604,542 + +0.1 604,546 - +1.4 604,547 + +1.8 604,548 - +2.2 604,562 + +0.7 604,586 - +1.3 604,595 - -1.7 604,600 + -1.3 604,626 - +1.3 604,632 - +0.4 604,632 - +0.8 604,633 + -0.3 604,643 + +0.8 604,643 + +0.2 605,171 + MMJJ_RS03190 0.41 -0.3 605,304 - +1.3 605,310 - +1.3 605,311 + MMJJ_RS03190 0.52 -1.3 605,340 - MMJJ_RS03190 0.54 +1.3 605,360 + MMJJ_RS03190 0.56 -0.7
Or see this region's nucleotide sequence