Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03150

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03140 and MMJJ_RS03145 are separated by 29 nucleotidesMMJJ_RS03145 and MMJJ_RS03150 are separated by 105 nucleotidesMMJJ_RS03150 and MMJJ_RS03155 are separated by 19 nucleotides MMJJ_RS03140: MMJJ_RS03140 - tRNA-dihydrouridine synthase, at 592,913 to 593,683 _RS03140 MMJJ_RS03145: MMJJ_RS03145 - GTP cyclohydrolase IIa, at 593,713 to 594,513 _RS03145 MMJJ_RS03150: MMJJ_RS03150 - 2-phospho-L-lactate transferase, at 594,619 to 595,548 _RS03150 MMJJ_RS03155: MMJJ_RS03155 - hypothetical protein, at 595,568 to 596,653 _RS03155 Position (kb) 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 593.672 kb on - strandat 593.697 kb on - strandat 593.698 kb on + strandat 593.715 kb on + strandat 593.729 kb on - strandat 593.729 kb on - strandat 593.729 kb on - strandat 593.729 kb on - strandat 593.730 kb on + strandat 593.730 kb on + strandat 593.730 kb on + strandat 593.730 kb on + strandat 593.730 kb on + strandat 593.730 kb on + strandat 593.730 kb on + strandat 593.735 kb on - strandat 593.736 kb on + strandat 593.778 kb on + strandat 593.946 kb on - strandat 593.959 kb on + strand, within MMJJ_RS03145at 594.755 kb on + strand, within MMJJ_RS03150at 594.763 kb on - strand, within MMJJ_RS03150at 594.764 kb on + strand, within MMJJ_RS03150at 594.776 kb on - strand, within MMJJ_RS03150at 595.044 kb on - strand, within MMJJ_RS03150at 595.389 kb on + strand, within MMJJ_RS03150at 595.422 kb on - strand, within MMJJ_RS03150at 595.432 kb on + strand, within MMJJ_RS03150at 595.432 kb on + strand, within MMJJ_RS03150at 595.433 kb on - strand, within MMJJ_RS03150at 595.433 kb on - strand, within MMJJ_RS03150at 595.433 kb on - strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.437 kb on - strand, within MMJJ_RS03150at 595.454 kb on + strand, within MMJJ_RS03150at 595.563 kb on - strandat 595.563 kb on - strandat 595.595 kb on - strandat 595.596 kb on + strandat 595.596 kb on + strandat 595.596 kb on + strandat 595.600 kb on - strandat 595.601 kb on + strandat 595.618 kb on - strandat 595.624 kb on + strandat 595.656 kb on - strandat 595.711 kb on - strand, within MMJJ_RS03155at 595.711 kb on - strand, within MMJJ_RS03155at 595.712 kb on + strand, within MMJJ_RS03155at 595.712 kb on + strand, within MMJJ_RS03155at 595.717 kb on + strand, within MMJJ_RS03155at 595.795 kb on - strandat 595.796 kb on + strand, within MMJJ_RS03155at 595.799 kb on - strand, within MMJJ_RS03155at 595.800 kb on + strand, within MMJJ_RS03155at 595.800 kb on + strand, within MMJJ_RS03155at 595.803 kb on + strand, within MMJJ_RS03155at 595.832 kb on - strand, within MMJJ_RS03155at 595.856 kb on - strand, within MMJJ_RS03155at 595.859 kb on - strand, within MMJJ_RS03155at 595.925 kb on + strand, within MMJJ_RS03155at 595.931 kb on - strand, within MMJJ_RS03155at 595.952 kb on - strand, within MMJJ_RS03155at 595.953 kb on + strand, within MMJJ_RS03155at 595.960 kb on + strand, within MMJJ_RS03155at 595.960 kb on + strand, within MMJJ_RS03155at 595.986 kb on + strand, within MMJJ_RS03155at 596.024 kb on - strand, within MMJJ_RS03155at 596.029 kb on - strand, within MMJJ_RS03155at 596.052 kb on + strand, within MMJJ_RS03155at 596.060 kb on - strand, within MMJJ_RS03155at 596.065 kb on - strand, within MMJJ_RS03155at 596.065 kb on - strand, within MMJJ_RS03155at 596.066 kb on + strand, within MMJJ_RS03155at 596.067 kb on - strand, within MMJJ_RS03155at 596.068 kb on + strand, within MMJJ_RS03155at 596.081 kb on + strand, within MMJJ_RS03155at 596.153 kb on + strand, within MMJJ_RS03155at 596.155 kb on + strand, within MMJJ_RS03155at 596.167 kb on - strand, within MMJJ_RS03155at 596.192 kb on - strand, within MMJJ_RS03155at 596.193 kb on + strand, within MMJJ_RS03155at 596.247 kb on + strand, within MMJJ_RS03155at 596.247 kb on + strand, within MMJJ_RS03155at 596.299 kb on - strand, within MMJJ_RS03155at 596.377 kb on + strand, within MMJJ_RS03155at 596.384 kb on - strand, within MMJJ_RS03155at 596.385 kb on + strand, within MMJJ_RS03155at 596.388 kb on + strand, within MMJJ_RS03155at 596.439 kb on + strand, within MMJJ_RS03155at 596.439 kb on + strand, within MMJJ_RS03155at 596.441 kb on + strand, within MMJJ_RS03155at 596.536 kb on - strand, within MMJJ_RS03155

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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593,672 - +0.4
593,697 - -2.6
593,698 + +0.7
593,715 + -0.9
593,729 - -0.5
593,729 - +0.4
593,729 - -1.7
593,729 - -0.6
593,730 + +1.9
593,730 + +1.2
593,730 + +2.9
593,730 + +1.1
593,730 + -2.0
593,730 + -2.4
593,730 + +0.4
593,735 - +1.8
593,736 + -1.1
593,778 + -1.6
593,946 - +1.3
593,959 + MMJJ_RS03145 0.31 +0.3
594,755 + MMJJ_RS03150 0.15 -1.0
594,763 - MMJJ_RS03150 0.15 -0.3
594,764 + MMJJ_RS03150 0.16 -0.3
594,776 - MMJJ_RS03150 0.17 +0.3
595,044 - MMJJ_RS03150 0.46 -0.7
595,389 + MMJJ_RS03150 0.83 -1.5
595,422 - MMJJ_RS03150 0.86 -0.3
595,432 + MMJJ_RS03150 0.87 -1.7
595,432 + MMJJ_RS03150 0.87 +1.3
595,433 - MMJJ_RS03150 0.88 +2.3
595,433 - MMJJ_RS03150 0.88 -0.3
595,433 - MMJJ_RS03150 0.88 -1.7
595,434 + MMJJ_RS03150 0.88 -2.6
595,434 + MMJJ_RS03150 0.88 -1.5
595,434 + MMJJ_RS03150 0.88 +0.3
595,434 + MMJJ_RS03150 0.88 -1.0
595,434 + MMJJ_RS03150 0.88 -0.3
595,437 - MMJJ_RS03150 0.88 +0.3
595,454 + MMJJ_RS03150 0.90 -1.5
595,563 - +2.8
595,563 - +0.4
595,595 - +0.5
595,596 + -3.6
595,596 + -2.3
595,596 + +0.2
595,600 - +0.6
595,601 + +0.8
595,618 - -2.0
595,624 + +2.9
595,656 - -0.1
595,711 - MMJJ_RS03155 0.13 -1.0
595,711 - MMJJ_RS03155 0.13 -0.3
595,712 + MMJJ_RS03155 0.13 -2.3
595,712 + MMJJ_RS03155 0.13 -1.3
595,717 + MMJJ_RS03155 0.14 +1.7
595,795 - +1.3
595,796 + MMJJ_RS03155 0.21 -2.3
595,799 - MMJJ_RS03155 0.21 -1.5
595,800 + MMJJ_RS03155 0.21 +0.3
595,800 + MMJJ_RS03155 0.21 +0.8
595,803 + MMJJ_RS03155 0.22 -2.5
595,832 - MMJJ_RS03155 0.24 -1.0
595,856 - MMJJ_RS03155 0.27 -0.6
595,859 - MMJJ_RS03155 0.27 -2.4
595,925 + MMJJ_RS03155 0.33 -0.2
595,931 - MMJJ_RS03155 0.33 -1.2
595,952 - MMJJ_RS03155 0.35 -1.5
595,953 + MMJJ_RS03155 0.35 +1.3
595,960 + MMJJ_RS03155 0.36 +0.9
595,960 + MMJJ_RS03155 0.36 +0.3
595,986 + MMJJ_RS03155 0.38 -1.5
596,024 - MMJJ_RS03155 0.42 +2.9
596,029 - MMJJ_RS03155 0.42 -1.1
596,052 + MMJJ_RS03155 0.45 -1.3
596,060 - MMJJ_RS03155 0.45 +4.0
596,065 - MMJJ_RS03155 0.46 -2.0
596,065 - MMJJ_RS03155 0.46 -1.0
596,066 + MMJJ_RS03155 0.46 -1.7
596,067 - MMJJ_RS03155 0.46 +1.5
596,068 + MMJJ_RS03155 0.46 +0.3
596,081 + MMJJ_RS03155 0.47 -3.4
596,153 + MMJJ_RS03155 0.54 +1.3
596,155 + MMJJ_RS03155 0.54 +0.3
596,167 - MMJJ_RS03155 0.55 -0.5
596,192 - MMJJ_RS03155 0.57 +0.3
596,193 + MMJJ_RS03155 0.58 -0.5
596,247 + MMJJ_RS03155 0.63 +1.3
596,247 + MMJJ_RS03155 0.63 -3.2
596,299 - MMJJ_RS03155 0.67 +2.3
596,377 + MMJJ_RS03155 0.74 +1.1
596,384 - MMJJ_RS03155 0.75 -0.7
596,385 + MMJJ_RS03155 0.75 -2.5
596,388 + MMJJ_RS03155 0.76 +1.8
596,439 + MMJJ_RS03155 0.80 -1.3
596,439 + MMJJ_RS03155 0.80 -0.2
596,441 + MMJJ_RS03155 0.80 -1.3
596,536 - MMJJ_RS03155 0.89 -1.7

Or see this region's nucleotide sequence