Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03110 and MMJJ_RS03115 are separated by 35 nucleotides MMJJ_RS03115 and MMJJ_RS03120 are separated by 67 nucleotides
MMJJ_RS03110: MMJJ_RS03110 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase, at 587,345 to 588,622
_RS03110
MMJJ_RS03115: MMJJ_RS03115 - sulfopyruvate decarboxylase subunit alpha, at 588,658 to 589,161
_RS03115
MMJJ_RS03120: MMJJ_RS03120 - ribose-phosphate diphosphokinase, at 589,229 to 590,092
_RS03120
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 587.737 kb on - strand, within MMJJ_RS03110 at 588.072 kb on + strand, within MMJJ_RS03110 at 588.150 kb on - strand, within MMJJ_RS03110 at 588.151 kb on + strand, within MMJJ_RS03110 at 588.154 kb on - strand, within MMJJ_RS03110 at 588.179 kb on - strand, within MMJJ_RS03110 at 588.405 kb on + strand, within MMJJ_RS03110 at 588.487 kb on - strand at 588.488 kb on + strand, within MMJJ_RS03110 at 588.500 kb on - strand at 588.501 kb on + strand at 588.501 kb on + strand at 588.689 kb on - strand at 588.689 kb on - strand at 588.690 kb on + strand at 588.692 kb on - strand at 588.692 kb on - strand at 588.758 kb on - strand, within MMJJ_RS03115 at 588.765 kb on - strand, within MMJJ_RS03115 at 588.939 kb on - strand, within MMJJ_RS03115 at 588.941 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.945 kb on + strand, within MMJJ_RS03115 at 588.945 kb on + strand at 589.159 kb on - strand at 589.169 kb on - strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.191 kb on - strand at 589.226 kb on - strand at 589.227 kb on + strand at 589.230 kb on - strand at 589.241 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.245 kb on + strand at 589.272 kb on + strand at 589.485 kb on + strand at 589.485 kb on + strand at 589.844 kb on - strand, within MMJJ_RS03120 at 590.126 kb on - strand at 590.147 kb on - strand at 590.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 587,737 - MMJJ_RS03110 0.31 -1.7 588,072 + MMJJ_RS03110 0.57 -1.9 588,150 - MMJJ_RS03110 0.63 -1.0 588,151 + MMJJ_RS03110 0.63 -2.0 588,154 - MMJJ_RS03110 0.63 -1.5 588,179 - MMJJ_RS03110 0.65 +1.3 588,405 + MMJJ_RS03110 0.83 +0.9 588,487 - +0.3 588,488 + MMJJ_RS03110 0.89 -2.0 588,500 - -1.5 588,501 + +0.3 588,501 + -1.9 588,689 - -0.4 588,689 - -2.0 588,690 + -0.3 588,692 - -1.4 588,692 - -1.9 588,758 - MMJJ_RS03115 0.20 -1.2 588,765 - MMJJ_RS03115 0.21 -2.8 588,939 - MMJJ_RS03115 0.56 -2.2 588,941 - MMJJ_RS03115 0.56 -1.0 588,944 - MMJJ_RS03115 0.57 -1.0 588,944 - MMJJ_RS03115 0.57 -2.5 588,944 - MMJJ_RS03115 0.57 -0.7 588,945 + MMJJ_RS03115 0.57 -1.0 588,945 + -0.7 589,159 - -2.7 589,169 - +0.7 589,173 + +0.4 589,173 + +1.3 589,173 + +0.3 589,173 + -0.7 589,191 - -1.5 589,226 - -0.3 589,227 + -1.0 589,230 - -1.3 589,241 - +0.9 589,244 - -1.3 589,244 - +0.3 589,244 - -2.0 589,244 - -1.6 589,245 + -0.5 589,272 + +0.3 589,485 + +1.3 589,485 + -0.3 589,844 - MMJJ_RS03120 0.71 +0.3 590,126 - +3.6 590,147 - -2.2 590,147 - -2.0
Or see this region's nucleotide sequence