Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03105 and MMJJ_RS03110 are separated by 150 nucleotides MMJJ_RS03110 and MMJJ_RS03115 are separated by 35 nucleotides MMJJ_RS03115 and MMJJ_RS03120 are separated by 67 nucleotides
MMJJ_RS03105: MMJJ_RS03105 - methyl-accepting chemotaxis protein, at 584,999 to 587,194
_RS03105
MMJJ_RS03110: MMJJ_RS03110 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase, at 587,345 to 588,622
_RS03110
MMJJ_RS03115: MMJJ_RS03115 - sulfopyruvate decarboxylase subunit alpha, at 588,658 to 589,161
_RS03115
MMJJ_RS03120: MMJJ_RS03120 - ribose-phosphate diphosphokinase, at 589,229 to 590,092
_RS03120
Position (kb) 587
588
589 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.376 kb on - strand, within MMJJ_RS03105 at 586.376 kb on - strand, within MMJJ_RS03105 at 586.377 kb on + strand, within MMJJ_RS03105 at 586.381 kb on - strand, within MMJJ_RS03105 at 586.381 kb on - strand, within MMJJ_RS03105 at 586.382 kb on + strand, within MMJJ_RS03105 at 586.382 kb on + strand, within MMJJ_RS03105 at 586.406 kb on - strand, within MMJJ_RS03105 at 586.407 kb on + strand, within MMJJ_RS03105 at 586.407 kb on + strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.483 kb on - strand, within MMJJ_RS03105 at 586.484 kb on + strand, within MMJJ_RS03105 at 586.485 kb on - strand, within MMJJ_RS03105 at 586.485 kb on - strand, within MMJJ_RS03105 at 586.485 kb on - strand, within MMJJ_RS03105 at 586.486 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.490 kb on - strand, within MMJJ_RS03105 at 586.490 kb on - strand, within MMJJ_RS03105 at 586.490 kb on - strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.599 kb on + strand, within MMJJ_RS03105 at 586.600 kb on - strand, within MMJJ_RS03105 at 586.600 kb on - strand, within MMJJ_RS03105 at 586.601 kb on + strand, within MMJJ_RS03105 at 586.601 kb on + strand, within MMJJ_RS03105 at 586.603 kb on - strand, within MMJJ_RS03105 at 586.603 kb on - strand, within MMJJ_RS03105 at 586.624 kb on - strand, within MMJJ_RS03105 at 586.624 kb on - strand, within MMJJ_RS03105 at 586.625 kb on + strand, within MMJJ_RS03105 at 586.651 kb on + strand, within MMJJ_RS03105 at 586.651 kb on + strand at 586.651 kb on + strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.678 kb on - strand, within MMJJ_RS03105 at 586.678 kb on - strand, within MMJJ_RS03105 at 586.678 kb on - strand, within MMJJ_RS03105 at 586.679 kb on + strand, within MMJJ_RS03105 at 586.720 kb on - strand, within MMJJ_RS03105 at 586.742 kb on - strand, within MMJJ_RS03105 at 586.818 kb on + strand, within MMJJ_RS03105 at 586.818 kb on + strand, within MMJJ_RS03105 at 586.824 kb on + strand, within MMJJ_RS03105 at 586.825 kb on - strand, within MMJJ_RS03105 at 586.825 kb on - strand, within MMJJ_RS03105 at 586.826 kb on + strand, within MMJJ_RS03105 at 586.875 kb on + strand, within MMJJ_RS03105 at 586.891 kb on - strand, within MMJJ_RS03105 at 586.934 kb on - strand, within MMJJ_RS03105 at 586.935 kb on + strand, within MMJJ_RS03105 at 586.935 kb on + strand, within MMJJ_RS03105 at 586.955 kb on + strand, within MMJJ_RS03105 at 586.975 kb on + strand at 586.975 kb on + strand at 586.983 kb on - strand at 586.984 kb on + strand at 586.996 kb on - strand at 587.014 kb on - strand at 587.089 kb on - strand at 587.092 kb on - strand at 587.092 kb on - strand at 587.093 kb on + strand at 587.093 kb on + strand at 587.095 kb on - strand at 587.096 kb on + strand at 587.098 kb on - strand at 587.099 kb on + strand at 587.132 kb on - strand at 587.142 kb on + strand at 587.156 kb on - strand at 587.195 kb on - strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.208 kb on + strand at 587.209 kb on - strand at 587.237 kb on + strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.244 kb on - strand at 587.245 kb on + strand at 587.253 kb on - strand at 587.269 kb on - strand at 587.269 kb on - strand at 587.273 kb on - strand at 587.273 kb on - strand at 587.273 kb on - strand at 587.274 kb on + strand at 587.274 kb on + strand at 587.274 kb on + strand at 587.274 kb on + strand at 587.283 kb on - strand at 587.302 kb on + strand at 587.309 kb on - strand at 587.315 kb on - strand at 587.315 kb on - strand at 587.315 kb on - strand at 587.315 kb on - strand at 587.316 kb on + strand at 587.316 kb on + strand at 587.316 kb on + strand at 587.316 kb on + strand at 587.318 kb on - strand at 587.321 kb on - strand at 587.325 kb on - strand at 587.326 kb on + strand at 587.347 kb on + strand at 587.471 kb on + strand at 587.487 kb on + strand, within MMJJ_RS03110 at 587.553 kb on + strand, within MMJJ_RS03110 at 587.737 kb on - strand, within MMJJ_RS03110 at 588.072 kb on + strand, within MMJJ_RS03110 at 588.150 kb on - strand, within MMJJ_RS03110 at 588.151 kb on + strand, within MMJJ_RS03110 at 588.154 kb on - strand, within MMJJ_RS03110 at 588.179 kb on - strand, within MMJJ_RS03110 at 588.405 kb on + strand, within MMJJ_RS03110 at 588.487 kb on - strand at 588.488 kb on + strand, within MMJJ_RS03110 at 588.500 kb on - strand at 588.501 kb on + strand at 588.501 kb on + strand at 588.689 kb on - strand at 588.689 kb on - strand at 588.690 kb on + strand at 588.692 kb on - strand at 588.692 kb on - strand at 588.758 kb on - strand, within MMJJ_RS03115 at 588.765 kb on - strand, within MMJJ_RS03115 at 588.939 kb on - strand, within MMJJ_RS03115 at 588.941 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.945 kb on + strand, within MMJJ_RS03115 at 588.945 kb on + strand at 589.159 kb on - strand at 589.169 kb on - strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.191 kb on - strand at 589.226 kb on - strand at 589.227 kb on + strand at 589.230 kb on - strand at 589.241 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.245 kb on + strand at 589.272 kb on + strand at 589.485 kb on + strand at 589.485 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 586,373 + MMJJ_RS03105 0.63 +2.6 586,373 + MMJJ_RS03105 0.63 -1.0 586,373 + MMJJ_RS03105 0.63 +2.3 586,373 + MMJJ_RS03105 0.63 -0.6 586,376 - MMJJ_RS03105 0.63 -2.6 586,376 - MMJJ_RS03105 0.63 -1.1 586,377 + MMJJ_RS03105 0.63 +4.8 586,381 - MMJJ_RS03105 0.63 -3.6 586,381 - MMJJ_RS03105 0.63 +0.6 586,382 + MMJJ_RS03105 0.63 -0.7 586,382 + MMJJ_RS03105 0.63 +0.7 586,406 - MMJJ_RS03105 0.64 +2.9 586,407 + MMJJ_RS03105 0.64 +2.1 586,407 + MMJJ_RS03105 0.64 +1.4 586,410 - MMJJ_RS03105 0.64 +2.9 586,410 - MMJJ_RS03105 0.64 +0.5 586,410 - MMJJ_RS03105 0.64 -2.1 586,410 - MMJJ_RS03105 0.64 -0.5 586,410 - MMJJ_RS03105 0.64 +3.0 586,411 + MMJJ_RS03105 0.64 -0.8 586,411 + MMJJ_RS03105 0.64 +4.0 586,411 + MMJJ_RS03105 0.64 +3.6 586,411 + MMJJ_RS03105 0.64 +2.1 586,411 + MMJJ_RS03105 0.64 +2.7 586,483 - MMJJ_RS03105 0.68 -0.9 586,484 + MMJJ_RS03105 0.68 +0.3 586,485 - MMJJ_RS03105 0.68 +0.8 586,485 - MMJJ_RS03105 0.68 -0.5 586,485 - MMJJ_RS03105 0.68 -0.3 586,486 + MMJJ_RS03105 0.68 -1.3 586,488 + MMJJ_RS03105 0.68 +0.6 586,488 + MMJJ_RS03105 0.68 -0.5 586,488 + MMJJ_RS03105 0.68 +1.7 586,488 + MMJJ_RS03105 0.68 +2.1 586,488 + MMJJ_RS03105 0.68 -3.1 586,488 + MMJJ_RS03105 0.68 +1.9 586,490 - MMJJ_RS03105 0.68 -0.3 586,490 - MMJJ_RS03105 0.68 -2.2 586,490 - MMJJ_RS03105 0.68 -0.6 586,491 + MMJJ_RS03105 0.68 +2.2 586,491 + MMJJ_RS03105 0.68 +3.9 586,491 + MMJJ_RS03105 0.68 -0.8 586,491 + MMJJ_RS03105 0.68 +3.3 586,599 + MMJJ_RS03105 0.73 +0.0 586,600 - MMJJ_RS03105 0.73 +1.8 586,600 - MMJJ_RS03105 0.73 +1.8 586,601 + MMJJ_RS03105 0.73 -2.4 586,601 + MMJJ_RS03105 0.73 -2.0 586,603 - MMJJ_RS03105 0.73 -0.5 586,603 - MMJJ_RS03105 0.73 +1.1 586,624 - MMJJ_RS03105 0.74 -1.7 586,624 - MMJJ_RS03105 0.74 -0.7 586,625 + MMJJ_RS03105 0.74 +1.4 586,651 + MMJJ_RS03105 0.75 +1.8 586,651 + -0.7 586,651 + MMJJ_RS03105 0.75 -2.9 586,674 - MMJJ_RS03105 0.76 +2.5 586,674 - MMJJ_RS03105 0.76 +2.1 586,674 - MMJJ_RS03105 0.76 +2.3 586,674 - MMJJ_RS03105 0.76 +1.3 586,674 - MMJJ_RS03105 0.76 -2.4 586,674 - MMJJ_RS03105 0.76 -0.7 586,675 + MMJJ_RS03105 0.76 -1.8 586,675 + MMJJ_RS03105 0.76 +0.5 586,675 + MMJJ_RS03105 0.76 +0.4 586,675 + MMJJ_RS03105 0.76 +0.7 586,675 + MMJJ_RS03105 0.76 -4.3 586,678 - MMJJ_RS03105 0.76 +3.1 586,678 - MMJJ_RS03105 0.76 -0.4 586,678 - MMJJ_RS03105 0.76 +2.4 586,679 + MMJJ_RS03105 0.77 -1.4 586,720 - MMJJ_RS03105 0.78 +2.1 586,742 - MMJJ_RS03105 0.79 +4.1 586,818 + MMJJ_RS03105 0.83 +0.8 586,818 + MMJJ_RS03105 0.83 -0.3 586,824 + MMJJ_RS03105 0.83 +0.9 586,825 - MMJJ_RS03105 0.83 -0.7 586,825 - MMJJ_RS03105 0.83 -0.3 586,826 + MMJJ_RS03105 0.83 +1.5 586,875 + MMJJ_RS03105 0.85 -2.2 586,891 - MMJJ_RS03105 0.86 +0.9 586,934 - MMJJ_RS03105 0.88 +0.1 586,935 + MMJJ_RS03105 0.88 +0.0 586,935 + MMJJ_RS03105 0.88 -1.7 586,955 + MMJJ_RS03105 0.89 -0.6 586,975 + +2.3 586,975 + -1.6 586,983 - -0.7 586,984 + -1.1 586,996 - +2.0 587,014 - -3.9 587,089 - -0.6 587,092 - +2.0 587,092 - -0.7 587,093 + -0.0 587,093 + -2.4 587,095 - +0.3 587,096 + +1.8 587,098 - +1.1 587,099 + -0.9 587,132 - +0.3 587,142 + -2.7 587,156 - -2.4 587,195 - +0.3 587,207 - -1.4 587,207 - -1.0 587,207 - -0.7 587,208 + +2.4 587,209 - -0.3 587,237 + -2.6 587,240 - +1.5 587,240 - -1.5 587,240 - +0.6 587,240 - +1.0 587,240 - -2.5 587,240 - +2.4 587,240 - -0.4 587,240 - +2.7 587,240 - +2.4 587,240 - -0.3 587,240 - -1.1 587,240 - +1.0 587,241 + -2.8 587,241 + +1.4 587,241 + +0.2 587,241 + -2.7 587,241 + +0.1 587,241 + -1.9 587,241 + +0.7 587,241 + +2.1 587,241 + -0.6 587,242 - -1.5 587,242 - +2.6 587,242 - +1.8 587,242 - -1.2 587,242 - +0.1 587,242 - +0.1 587,242 - -1.5 587,242 - +2.5 587,242 - +0.1 587,242 - +1.3 587,242 - -1.4 587,242 - -1.7 587,243 + -3.3 587,243 + -1.0 587,243 + -1.1 587,243 + +2.2 587,243 + -0.4 587,243 + +0.3 587,243 + +1.3 587,243 + +4.8 587,243 + +1.7 587,243 + +0.4 587,244 - -1.2 587,245 + +1.0 587,253 - +2.1 587,269 - -2.0 587,269 - -1.0 587,273 - +0.3 587,273 - +1.3 587,273 - -0.9 587,274 + +1.0 587,274 + +1.5 587,274 + -1.7 587,274 + +1.9 587,283 - -0.7 587,302 + +0.3 587,309 - +1.0 587,315 - -0.2 587,315 - +3.1 587,315 - -3.8 587,315 - +0.8 587,316 + +0.5 587,316 + -0.3 587,316 + -2.5 587,316 + -2.6 587,318 - +0.8 587,321 - -1.7 587,325 - -1.3 587,326 + -1.0 587,347 + -0.9 587,471 + -1.3 587,487 + MMJJ_RS03110 0.11 -1.0 587,553 + MMJJ_RS03110 0.16 -0.3 587,737 - MMJJ_RS03110 0.31 -1.7 588,072 + MMJJ_RS03110 0.57 -1.9 588,150 - MMJJ_RS03110 0.63 -1.0 588,151 + MMJJ_RS03110 0.63 -2.0 588,154 - MMJJ_RS03110 0.63 -1.5 588,179 - MMJJ_RS03110 0.65 +1.3 588,405 + MMJJ_RS03110 0.83 +0.9 588,487 - +0.3 588,488 + MMJJ_RS03110 0.89 -2.0 588,500 - -1.5 588,501 + +0.3 588,501 + -1.9 588,689 - -0.4 588,689 - -2.0 588,690 + -0.3 588,692 - -1.4 588,692 - -1.9 588,758 - MMJJ_RS03115 0.20 -1.2 588,765 - MMJJ_RS03115 0.21 -2.8 588,939 - MMJJ_RS03115 0.56 -2.2 588,941 - MMJJ_RS03115 0.56 -1.0 588,944 - MMJJ_RS03115 0.57 -1.0 588,944 - MMJJ_RS03115 0.57 -2.5 588,944 - MMJJ_RS03115 0.57 -0.7 588,945 + MMJJ_RS03115 0.57 -1.0 588,945 + -0.7 589,159 - -2.7 589,169 - +0.7 589,173 + +0.4 589,173 + +1.3 589,173 + +0.3 589,173 + -0.7 589,191 - -1.5 589,226 - -0.3 589,227 + -1.0 589,230 - -1.3 589,241 - +0.9 589,244 - -1.3 589,244 - +0.3 589,244 - -2.0 589,244 - -1.6 589,245 + -0.5 589,272 + +0.3 589,485 + +1.3 589,485 + -0.3
Or see this region's nucleotide sequence