Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03075 and MMJJ_RS03080 are separated by 141 nucleotides MMJJ_RS03080 and MMJJ_RS03085 are separated by 29 nucleotides MMJJ_RS03085 and MMJJ_RS03090 are separated by 207 nucleotides
MMJJ_RS03075: MMJJ_RS03075 - sodium-dependent transporter, at 577,042 to 578,553
_RS03075
MMJJ_RS03080: MMJJ_RS03080 - carbohydrate kinase family protein, at 578,695 to 579,603
_RS03080
MMJJ_RS03085: MMJJ_RS03085 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 579,633 to 580,349
_RS03085
MMJJ_RS03090: MMJJ_RS03090 - ECF transporter S component, at 580,557 to 581,153
_RS03090
Position (kb) 578
579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 577.697 kb on + strand, within MMJJ_RS03075 at 577.802 kb on + strand, within MMJJ_RS03075 at 577.802 kb on + strand, within MMJJ_RS03075 at 577.816 kb on + strand, within MMJJ_RS03075 at 577.823 kb on - strand, within MMJJ_RS03075 at 577.823 kb on - strand, within MMJJ_RS03075 at 577.846 kb on + strand, within MMJJ_RS03075 at 577.937 kb on - strand, within MMJJ_RS03075 at 577.940 kb on - strand, within MMJJ_RS03075 at 577.941 kb on + strand, within MMJJ_RS03075 at 577.954 kb on + strand, within MMJJ_RS03075 at 577.971 kb on - strand, within MMJJ_RS03075 at 578.021 kb on + strand, within MMJJ_RS03075 at 578.052 kb on - strand, within MMJJ_RS03075 at 578.065 kb on - strand, within MMJJ_RS03075 at 578.076 kb on + strand, within MMJJ_RS03075 at 578.076 kb on + strand, within MMJJ_RS03075 at 578.080 kb on - strand, within MMJJ_RS03075 at 578.080 kb on - strand, within MMJJ_RS03075 at 578.225 kb on - strand, within MMJJ_RS03075 at 578.225 kb on - strand, within MMJJ_RS03075 at 578.231 kb on + strand, within MMJJ_RS03075 at 578.245 kb on + strand, within MMJJ_RS03075 at 578.245 kb on + strand, within MMJJ_RS03075 at 578.255 kb on - strand, within MMJJ_RS03075 at 578.258 kb on - strand, within MMJJ_RS03075 at 578.265 kb on - strand, within MMJJ_RS03075 at 578.269 kb on - strand, within MMJJ_RS03075 at 578.285 kb on + strand, within MMJJ_RS03075 at 578.285 kb on + strand, within MMJJ_RS03075 at 578.408 kb on + strand at 578.462 kb on - strand at 578.477 kb on + strand at 578.479 kb on + strand at 578.600 kb on - strand at 578.607 kb on - strand at 578.607 kb on - strand at 578.608 kb on + strand at 578.609 kb on - strand at 578.610 kb on + strand at 578.611 kb on - strand at 578.612 kb on + strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.666 kb on - strand at 578.667 kb on + strand at 578.667 kb on + strand at 578.674 kb on + strand at 578.697 kb on + strand at 578.698 kb on - strand at 578.699 kb on + strand at 578.716 kb on + strand at 578.774 kb on + strand at 578.774 kb on + strand at 578.788 kb on - strand, within MMJJ_RS03080 at 578.788 kb on - strand, within MMJJ_RS03080 at 578.789 kb on + strand, within MMJJ_RS03080 at 578.789 kb on + strand, within MMJJ_RS03080 at 578.833 kb on - strand, within MMJJ_RS03080 at 578.837 kb on - strand, within MMJJ_RS03080 at 578.837 kb on - strand, within MMJJ_RS03080 at 578.902 kb on - strand, within MMJJ_RS03080 at 578.916 kb on - strand, within MMJJ_RS03080 at 578.917 kb on + strand, within MMJJ_RS03080 at 578.917 kb on + strand, within MMJJ_RS03080 at 578.936 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.938 kb on - strand, within MMJJ_RS03080 at 578.939 kb on + strand, within MMJJ_RS03080 at 578.939 kb on + strand, within MMJJ_RS03080 at 578.966 kb on + strand, within MMJJ_RS03080 at 578.971 kb on - strand, within MMJJ_RS03080 at 578.989 kb on + strand, within MMJJ_RS03080 at 579.096 kb on - strand, within MMJJ_RS03080 at 579.101 kb on - strand, within MMJJ_RS03080 at 579.101 kb on - strand, within MMJJ_RS03080 at 579.102 kb on + strand, within MMJJ_RS03080 at 579.102 kb on + strand, within MMJJ_RS03080 at 579.103 kb on - strand, within MMJJ_RS03080 at 579.109 kb on - strand, within MMJJ_RS03080 at 579.110 kb on + strand, within MMJJ_RS03080 at 579.205 kb on - strand, within MMJJ_RS03080 at 579.424 kb on - strand, within MMJJ_RS03080 at 579.424 kb on - strand, within MMJJ_RS03080 at 579.468 kb on - strand, within MMJJ_RS03080 at 579.550 kb on - strand at 579.550 kb on - strand at 579.552 kb on - strand at 579.552 kb on - strand at 579.552 kb on - strand at 579.553 kb on + strand at 579.553 kb on + strand at 579.554 kb on - strand at 579.554 kb on - strand at 579.554 kb on - strand at 579.555 kb on + strand at 579.555 kb on + strand at 579.555 kb on + strand at 579.619 kb on - strand at 579.634 kb on - strand at 580.402 kb on - strand at 580.434 kb on - strand at 580.435 kb on + strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.437 kb on + strand at 580.442 kb on - strand at 580.442 kb on - strand at 580.442 kb on - strand at 580.446 kb on - strand at 580.482 kb on + strand at 580.489 kb on - strand at 580.510 kb on + strand at 580.541 kb on - strand at 580.559 kb on + strand at 580.588 kb on + strand at 580.588 kb on + strand at 580.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 577,697 + MMJJ_RS03075 0.43 -0.7 577,802 + MMJJ_RS03075 0.50 -2.4 577,802 + MMJJ_RS03075 0.50 +0.6 577,816 + MMJJ_RS03075 0.51 -2.7 577,823 - MMJJ_RS03075 0.52 +1.9 577,823 - MMJJ_RS03075 0.52 -0.3 577,846 + MMJJ_RS03075 0.53 -1.4 577,937 - MMJJ_RS03075 0.59 -0.8 577,940 - MMJJ_RS03075 0.59 +0.5 577,941 + MMJJ_RS03075 0.59 +0.3 577,954 + MMJJ_RS03075 0.60 -2.2 577,971 - MMJJ_RS03075 0.61 -2.3 578,021 + MMJJ_RS03075 0.65 -1.3 578,052 - MMJJ_RS03075 0.67 -2.2 578,065 - MMJJ_RS03075 0.68 -1.7 578,076 + MMJJ_RS03075 0.68 +0.2 578,076 + MMJJ_RS03075 0.68 -1.3 578,080 - MMJJ_RS03075 0.69 -2.6 578,080 - MMJJ_RS03075 0.69 +3.9 578,225 - MMJJ_RS03075 0.78 +1.0 578,225 - MMJJ_RS03075 0.78 -0.8 578,231 + MMJJ_RS03075 0.79 -0.2 578,245 + MMJJ_RS03075 0.80 +1.3 578,245 + MMJJ_RS03075 0.80 -0.4 578,255 - MMJJ_RS03075 0.80 -2.7 578,258 - MMJJ_RS03075 0.80 -1.5 578,265 - MMJJ_RS03075 0.81 -1.9 578,269 - MMJJ_RS03075 0.81 -0.4 578,285 + MMJJ_RS03075 0.82 -0.7 578,285 + MMJJ_RS03075 0.82 +3.1 578,408 + -3.0 578,462 - +2.4 578,477 + +1.4 578,479 + +0.6 578,600 - -2.3 578,607 - -1.4 578,607 - -1.3 578,608 + +1.4 578,609 - -1.3 578,610 + -1.3 578,611 - +0.3 578,612 + +2.9 578,666 - -2.6 578,666 - -1.3 578,666 - +3.0 578,667 + +2.3 578,667 + -1.6 578,674 + +1.8 578,697 + -0.5 578,698 - -0.9 578,699 + -2.9 578,716 + -0.7 578,774 + -2.5 578,774 + -2.0 578,788 - MMJJ_RS03080 0.10 -2.4 578,788 - MMJJ_RS03080 0.10 -0.6 578,789 + MMJJ_RS03080 0.10 +0.3 578,789 + MMJJ_RS03080 0.10 -1.4 578,833 - MMJJ_RS03080 0.15 -0.7 578,837 - MMJJ_RS03080 0.16 +1.2 578,837 - MMJJ_RS03080 0.16 -0.8 578,902 - MMJJ_RS03080 0.23 -2.4 578,916 - MMJJ_RS03080 0.24 -2.0 578,917 + MMJJ_RS03080 0.24 -1.7 578,917 + MMJJ_RS03080 0.24 +0.1 578,936 - MMJJ_RS03080 0.27 +1.3 578,938 - MMJJ_RS03080 0.27 -1.6 578,938 - MMJJ_RS03080 0.27 -1.0 578,938 - MMJJ_RS03080 0.27 -3.4 578,938 - MMJJ_RS03080 0.27 -2.1 578,939 + MMJJ_RS03080 0.27 -4.0 578,939 + MMJJ_RS03080 0.27 +0.8 578,966 + MMJJ_RS03080 0.30 -0.8 578,971 - MMJJ_RS03080 0.30 +1.3 578,989 + MMJJ_RS03080 0.32 -0.7 579,096 - MMJJ_RS03080 0.44 -3.8 579,101 - MMJJ_RS03080 0.45 -2.2 579,101 - MMJJ_RS03080 0.45 -3.1 579,102 + MMJJ_RS03080 0.45 -1.1 579,102 + MMJJ_RS03080 0.45 -0.3 579,103 - MMJJ_RS03080 0.45 -2.6 579,109 - MMJJ_RS03080 0.46 -2.7 579,110 + MMJJ_RS03080 0.46 +0.5 579,205 - MMJJ_RS03080 0.56 +0.4 579,424 - MMJJ_RS03080 0.80 -1.7 579,424 - MMJJ_RS03080 0.80 -2.8 579,468 - MMJJ_RS03080 0.85 -1.0 579,550 - +3.4 579,550 - +0.8 579,552 - +0.8 579,552 - -1.3 579,552 - -3.1 579,553 + -0.1 579,553 + -2.8 579,554 - -2.0 579,554 - -2.7 579,554 - +0.7 579,555 + +0.6 579,555 + -1.9 579,555 + +0.6 579,619 - +2.4 579,634 - -1.7 580,402 - +1.3 580,434 - +2.3 580,435 + -0.7 580,436 - -1.1 580,436 - -3.1 580,437 + -0.7 580,437 + -0.6 580,437 + -1.7 580,437 + -1.6 580,437 + -0.3 580,437 + -1.5 580,437 + -1.5 580,442 - -1.6 580,442 - -0.7 580,442 - -1.8 580,446 - +0.6 580,482 + +0.8 580,489 - +2.0 580,510 + -1.7 580,541 - -0.5 580,559 + +0.2 580,588 + +0.9 580,588 + +1.2 580,588 + -1.4
Or see this region's nucleotide sequence