Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03065 and MMJJ_RS03070 are separated by 194 nucleotides MMJJ_RS03070 and MMJJ_RS03075 are separated by 12 nucleotides
MMJJ_RS03065: MMJJ_RS03065 - CBS domain-containing protein, at 575,768 to 576,733
_RS03065
MMJJ_RS03070: MMJJ_RS03070 - MetS family NSS transporter small subunit, at 576,928 to 577,029
_RS03070
MMJJ_RS03075: MMJJ_RS03075 - sodium-dependent transporter, at 577,042 to 578,553
_RS03075
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 575.941 kb on - strand, within MMJJ_RS03065 at 575.944 kb on - strand, within MMJJ_RS03065 at 575.948 kb on - strand, within MMJJ_RS03065 at 575.965 kb on - strand, within MMJJ_RS03065 at 575.965 kb on - strand, within MMJJ_RS03065 at 575.966 kb on + strand, within MMJJ_RS03065 at 575.978 kb on - strand, within MMJJ_RS03065 at 575.979 kb on + strand, within MMJJ_RS03065 at 576.014 kb on - strand, within MMJJ_RS03065 at 576.014 kb on - strand, within MMJJ_RS03065 at 576.108 kb on + strand, within MMJJ_RS03065 at 576.108 kb on + strand, within MMJJ_RS03065 at 576.157 kb on + strand, within MMJJ_RS03065 at 576.160 kb on - strand, within MMJJ_RS03065 at 576.167 kb on + strand, within MMJJ_RS03065 at 576.167 kb on + strand, within MMJJ_RS03065 at 576.186 kb on + strand, within MMJJ_RS03065 at 576.221 kb on + strand, within MMJJ_RS03065 at 576.221 kb on - strand, within MMJJ_RS03065 at 576.222 kb on + strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.397 kb on - strand, within MMJJ_RS03065 at 576.397 kb on - strand, within MMJJ_RS03065 at 576.422 kb on - strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.466 kb on - strand, within MMJJ_RS03065 at 576.470 kb on - strand, within MMJJ_RS03065 at 576.500 kb on - strand, within MMJJ_RS03065 at 576.500 kb on - strand, within MMJJ_RS03065 at 576.503 kb on + strand, within MMJJ_RS03065 at 576.503 kb on + strand, within MMJJ_RS03065 at 576.563 kb on - strand, within MMJJ_RS03065 at 576.563 kb on - strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.573 kb on + strand, within MMJJ_RS03065 at 576.596 kb on - strand, within MMJJ_RS03065 at 576.644 kb on + strand at 576.644 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.651 kb on - strand at 576.652 kb on + strand at 576.655 kb on - strand at 576.656 kb on + strand at 576.659 kb on - strand at 576.663 kb on - strand at 576.663 kb on - strand at 576.663 kb on - strand at 576.664 kb on + strand at 576.664 kb on + strand at 576.664 kb on + strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.698 kb on - strand at 576.708 kb on + strand at 576.724 kb on - strand at 576.724 kb on - strand at 576.725 kb on + strand at 576.728 kb on - strand at 576.734 kb on - strand at 576.775 kb on - strand at 576.778 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.786 kb on + strand at 576.786 kb on + strand at 576.786 kb on + strand at 576.786 kb on + strand at 576.787 kb on - strand at 576.787 kb on - strand at 576.788 kb on + strand at 576.788 kb on + strand at 576.790 kb on - strand at 576.790 kb on - strand at 576.790 kb on - strand at 576.792 kb on - strand at 576.793 kb on + strand at 576.793 kb on + strand at 576.799 kb on - strand at 576.799 kb on - strand at 576.838 kb on - strand at 576.859 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.890 kb on - strand at 576.929 kb on - strand at 576.930 kb on + strand at 576.965 kb on - strand, within MMJJ_RS03070 at 576.965 kb on - strand, within MMJJ_RS03070 at 577.000 kb on - strand, within MMJJ_RS03070 at 577.001 kb on + strand, within MMJJ_RS03070 at 577.009 kb on - strand, within MMJJ_RS03070 at 577.010 kb on + strand, within MMJJ_RS03070 at 577.032 kb on - strand at 577.035 kb on - strand at 577.036 kb on + strand at 577.036 kb on + strand at 577.043 kb on - strand at 577.119 kb on - strand at 577.124 kb on + strand at 577.144 kb on - strand at 577.144 kb on - strand at 577.204 kb on - strand, within MMJJ_RS03075 at 577.229 kb on + strand, within MMJJ_RS03075 at 577.235 kb on - strand, within MMJJ_RS03075 at 577.236 kb on + strand, within MMJJ_RS03075 at 577.236 kb on + strand, within MMJJ_RS03075 at 577.236 kb on + strand, within MMJJ_RS03075 at 577.296 kb on + strand, within MMJJ_RS03075 at 577.370 kb on + strand, within MMJJ_RS03075 at 577.403 kb on - strand, within MMJJ_RS03075 at 577.404 kb on + strand, within MMJJ_RS03075 at 577.411 kb on - strand, within MMJJ_RS03075 at 577.412 kb on + strand, within MMJJ_RS03075 at 577.427 kb on - strand, within MMJJ_RS03075 at 577.448 kb on - strand, within MMJJ_RS03075 at 577.448 kb on - strand, within MMJJ_RS03075 at 577.480 kb on + strand, within MMJJ_RS03075 at 577.583 kb on + strand, within MMJJ_RS03075 at 577.583 kb on + strand, within MMJJ_RS03075 at 577.598 kb on + strand, within MMJJ_RS03075 at 577.598 kb on + strand, within MMJJ_RS03075 at 577.598 kb on + strand, within MMJJ_RS03075 at 577.610 kb on + strand, within MMJJ_RS03075 at 577.692 kb on - strand, within MMJJ_RS03075 at 577.697 kb on + strand, within MMJJ_RS03075 at 577.802 kb on + strand, within MMJJ_RS03075 at 577.802 kb on + strand, within MMJJ_RS03075 at 577.816 kb on + strand, within MMJJ_RS03075 at 577.823 kb on - strand, within MMJJ_RS03075 at 577.823 kb on - strand, within MMJJ_RS03075 at 577.846 kb on + strand, within MMJJ_RS03075 at 577.937 kb on - strand, within MMJJ_RS03075 at 577.940 kb on - strand, within MMJJ_RS03075 at 577.941 kb on + strand, within MMJJ_RS03075 at 577.954 kb on + strand, within MMJJ_RS03075 at 577.971 kb on - strand, within MMJJ_RS03075 at 578.021 kb on + strand, within MMJJ_RS03075
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 575,941 - MMJJ_RS03065 0.18 +0.8 575,944 - MMJJ_RS03065 0.18 +2.0 575,948 - MMJJ_RS03065 0.19 -0.4 575,965 - MMJJ_RS03065 0.20 +1.7 575,965 - MMJJ_RS03065 0.20 +1.7 575,966 + MMJJ_RS03065 0.20 +0.1 575,978 - MMJJ_RS03065 0.22 -0.7 575,979 + MMJJ_RS03065 0.22 +0.5 576,014 - MMJJ_RS03065 0.25 +1.5 576,014 - MMJJ_RS03065 0.25 -0.9 576,108 + MMJJ_RS03065 0.35 +0.0 576,108 + MMJJ_RS03065 0.35 +1.8 576,157 + MMJJ_RS03065 0.40 +2.5 576,160 - MMJJ_RS03065 0.41 +0.5 576,167 + MMJJ_RS03065 0.41 -1.8 576,167 + MMJJ_RS03065 0.41 -0.5 576,186 + MMJJ_RS03065 0.43 +2.7 576,221 + MMJJ_RS03065 0.47 -0.4 576,221 - MMJJ_RS03065 0.47 -1.4 576,222 + MMJJ_RS03065 0.47 -2.9 576,368 - MMJJ_RS03065 0.62 +2.0 576,368 - MMJJ_RS03065 0.62 -1.0 576,368 - MMJJ_RS03065 0.62 -2.4 576,369 + MMJJ_RS03065 0.62 -0.3 576,369 + MMJJ_RS03065 0.62 +2.0 576,369 + MMJJ_RS03065 0.62 -0.9 576,369 + MMJJ_RS03065 0.62 +0.0 576,397 - MMJJ_RS03065 0.65 -1.2 576,397 - MMJJ_RS03065 0.65 +4.9 576,422 - MMJJ_RS03065 0.68 +2.0 576,437 + MMJJ_RS03065 0.69 +1.7 576,437 + MMJJ_RS03065 0.69 -1.3 576,437 + MMJJ_RS03065 0.69 -1.0 576,466 - MMJJ_RS03065 0.72 -1.7 576,470 - MMJJ_RS03065 0.73 +1.8 576,500 - MMJJ_RS03065 0.76 +0.9 576,500 - MMJJ_RS03065 0.76 -1.6 576,503 + MMJJ_RS03065 0.76 +0.3 576,503 + MMJJ_RS03065 0.76 +1.3 576,563 - MMJJ_RS03065 0.82 -0.7 576,563 - MMJJ_RS03065 0.82 -0.7 576,564 + MMJJ_RS03065 0.82 -1.2 576,564 + MMJJ_RS03065 0.82 +1.8 576,564 + MMJJ_RS03065 0.82 +1.6 576,573 + MMJJ_RS03065 0.83 +1.9 576,596 - MMJJ_RS03065 0.86 +3.4 576,644 + +0.3 576,644 + +1.8 576,648 + -2.0 576,648 + +0.1 576,648 + -0.7 576,651 - -1.5 576,652 + -2.0 576,655 - -0.0 576,656 + -0.2 576,659 - +2.1 576,663 - -0.0 576,663 - +1.0 576,663 - +3.7 576,664 + -2.8 576,664 + -0.5 576,664 + -1.6 576,694 - +2.0 576,694 - -0.8 576,694 - -1.9 576,694 - +0.5 576,694 - -0.2 576,694 - +2.9 576,694 - +1.3 576,694 - +0.2 576,694 - -0.0 576,695 + -0.7 576,695 + +5.3 576,695 + +0.5 576,695 + +2.1 576,695 + +0.2 576,696 - +1.0 576,696 - +0.1 576,696 - +0.5 576,696 - +0.7 576,696 - -1.2 576,696 - +1.8 576,697 + -1.3 576,697 + +2.2 576,697 + +0.5 576,697 + +0.9 576,698 - +2.1 576,708 + +2.7 576,724 - -0.7 576,724 - +0.6 576,725 + +1.7 576,728 - +1.6 576,734 - +0.2 576,775 - +2.5 576,778 - -1.9 576,785 - -0.9 576,785 - +1.4 576,785 - +2.2 576,785 - -1.7 576,785 - -0.7 576,785 - -1.0 576,785 - +1.1 576,786 + +2.6 576,786 + +0.5 576,786 + +0.7 576,786 + +3.1 576,787 - -0.3 576,787 - +2.2 576,788 + -0.6 576,788 + -1.7 576,790 - -1.4 576,790 - +5.5 576,790 - +1.8 576,792 - +2.5 576,793 + +1.2 576,793 + -0.1 576,799 - -0.3 576,799 - +3.8 576,838 - -1.3 576,859 + +1.3 576,880 + -2.2 576,880 + +0.2 576,890 - -1.6 576,929 - +3.9 576,930 + +2.6 576,965 - MMJJ_RS03070 0.36 +1.2 576,965 - MMJJ_RS03070 0.36 +2.6 577,000 - MMJJ_RS03070 0.71 -1.0 577,001 + MMJJ_RS03070 0.72 -1.5 577,009 - MMJJ_RS03070 0.79 -1.7 577,010 + MMJJ_RS03070 0.80 +1.2 577,032 - -1.7 577,035 - -0.6 577,036 + -3.7 577,036 + +0.3 577,043 - -0.5 577,119 - -1.2 577,124 + -3.3 577,144 - -0.7 577,144 - +1.6 577,204 - MMJJ_RS03075 0.11 -2.2 577,229 + MMJJ_RS03075 0.12 +0.8 577,235 - MMJJ_RS03075 0.13 -0.7 577,236 + MMJJ_RS03075 0.13 -2.4 577,236 + MMJJ_RS03075 0.13 +0.8 577,236 + MMJJ_RS03075 0.13 +1.5 577,296 + MMJJ_RS03075 0.17 +1.9 577,370 + MMJJ_RS03075 0.22 -2.4 577,403 - MMJJ_RS03075 0.24 +1.8 577,404 + MMJJ_RS03075 0.24 +1.1 577,411 - MMJJ_RS03075 0.24 -0.1 577,412 + MMJJ_RS03075 0.24 -1.9 577,427 - MMJJ_RS03075 0.25 +0.2 577,448 - MMJJ_RS03075 0.27 -2.8 577,448 - MMJJ_RS03075 0.27 -0.7 577,480 + MMJJ_RS03075 0.29 -2.4 577,583 + MMJJ_RS03075 0.36 +2.4 577,583 + MMJJ_RS03075 0.36 +0.2 577,598 + MMJJ_RS03075 0.37 -1.4 577,598 + MMJJ_RS03075 0.37 +0.3 577,598 + MMJJ_RS03075 0.37 -0.3 577,610 + MMJJ_RS03075 0.38 -1.6 577,692 - MMJJ_RS03075 0.43 -2.7 577,697 + MMJJ_RS03075 0.43 -0.7 577,802 + MMJJ_RS03075 0.50 -2.4 577,802 + MMJJ_RS03075 0.50 +0.6 577,816 + MMJJ_RS03075 0.51 -2.7 577,823 - MMJJ_RS03075 0.52 +1.9 577,823 - MMJJ_RS03075 0.52 -0.3 577,846 + MMJJ_RS03075 0.53 -1.4 577,937 - MMJJ_RS03075 0.59 -0.8 577,940 - MMJJ_RS03075 0.59 +0.5 577,941 + MMJJ_RS03075 0.59 +0.3 577,954 + MMJJ_RS03075 0.60 -2.2 577,971 - MMJJ_RS03075 0.61 -2.3 578,021 + MMJJ_RS03075 0.65 -1.3
Or see this region's nucleotide sequence