Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02975 and MMJJ_RS02980 are separated by 18 nucleotides MMJJ_RS02980 and MMJJ_RS02985 are separated by 170 nucleotides MMJJ_RS02985 and MMJJ_RS02990 are separated by 55 nucleotides
MMJJ_RS02975: MMJJ_RS02975 - NAD(P)H-dependent oxidoreductase, at 554,450 to 554,944
_RS02975
MMJJ_RS02980: MMJJ_RS02980 - TatD family hydrolase, at 554,963 to 555,724
_RS02980
MMJJ_RS02985: MMJJ_RS02985 - MBL fold metallo-hydrolase, at 555,895 to 557,196
_RS02985
MMJJ_RS02990: MMJJ_RS02990 - hypothetical protein, at 557,252 to 560,617
_RS02990
Position (kb) 555
556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.919 kb on - strand at 554.920 kb on + strand at 554.920 kb on + strand at 554.920 kb on + strand at 554.920 kb on + strand at 554.922 kb on + strand at 554.944 kb on - strand at 554.945 kb on + strand at 554.945 kb on + strand at 554.946 kb on - strand at 554.946 kb on - strand at 554.946 kb on - strand at 554.946 kb on - strand at 554.947 kb on + strand at 554.947 kb on + strand at 554.960 kb on - strand at 554.960 kb on - strand at 554.965 kb on + strand at 554.965 kb on + strand at 554.968 kb on - strand at 554.968 kb on - strand at 554.975 kb on + strand at 554.992 kb on - strand at 554.992 kb on - strand at 554.992 kb on - strand at 554.995 kb on - strand at 554.995 kb on - strand at 555.011 kb on - strand at 555.011 kb on - strand at 555.012 kb on + strand at 555.012 kb on + strand at 555.041 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.071 kb on - strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.072 kb on + strand, within MMJJ_RS02980 at 555.094 kb on - strand, within MMJJ_RS02980 at 555.100 kb on - strand, within MMJJ_RS02980 at 555.105 kb on + strand, within MMJJ_RS02980 at 555.138 kb on + strand, within MMJJ_RS02980 at 555.182 kb on + strand, within MMJJ_RS02980 at 555.213 kb on + strand, within MMJJ_RS02980 at 555.243 kb on + strand, within MMJJ_RS02980 at 555.243 kb on + strand, within MMJJ_RS02980 at 555.326 kb on + strand, within MMJJ_RS02980 at 555.344 kb on - strand, within MMJJ_RS02980 at 555.344 kb on - strand, within MMJJ_RS02980 at 555.378 kb on + strand, within MMJJ_RS02980 at 555.465 kb on - strand, within MMJJ_RS02980 at 555.523 kb on - strand, within MMJJ_RS02980 at 555.523 kb on - strand, within MMJJ_RS02980 at 555.524 kb on + strand, within MMJJ_RS02980 at 555.647 kb on + strand, within MMJJ_RS02980 at 555.760 kb on - strand at 555.761 kb on + strand at 555.791 kb on + strand at 555.794 kb on - strand at 555.803 kb on + strand at 555.812 kb on + strand at 555.844 kb on - strand at 555.844 kb on - strand at 555.847 kb on + strand at 555.847 kb on + strand at 555.847 kb on + strand at 555.849 kb on + strand at 555.855 kb on - strand at 555.855 kb on - strand at 555.856 kb on + strand at 555.863 kb on + strand at 555.863 kb on + strand at 555.872 kb on - strand at 555.872 kb on - strand at 555.872 kb on - strand at 555.873 kb on + strand at 555.944 kb on - strand at 555.975 kb on + strand at 556.029 kb on - strand, within MMJJ_RS02985 at 556.110 kb on - strand, within MMJJ_RS02985 at 556.110 kb on - strand, within MMJJ_RS02985 at 556.111 kb on + strand, within MMJJ_RS02985 at 556.126 kb on - strand, within MMJJ_RS02985 at 556.126 kb on - strand, within MMJJ_RS02985 at 556.127 kb on + strand, within MMJJ_RS02985 at 556.233 kb on - strand, within MMJJ_RS02985 at 556.261 kb on + strand, within MMJJ_RS02985 at 556.264 kb on - strand, within MMJJ_RS02985 at 556.347 kb on + strand, within MMJJ_RS02985 at 556.347 kb on + strand, within MMJJ_RS02985 at 556.373 kb on + strand, within MMJJ_RS02985 at 556.409 kb on - strand, within MMJJ_RS02985 at 556.471 kb on - strand, within MMJJ_RS02985 at 556.471 kb on - strand, within MMJJ_RS02985 at 556.471 kb on - strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.472 kb on + strand, within MMJJ_RS02985 at 556.495 kb on + strand, within MMJJ_RS02985 at 556.562 kb on - strand, within MMJJ_RS02985 at 556.563 kb on + strand, within MMJJ_RS02985 at 556.607 kb on - strand, within MMJJ_RS02985 at 556.610 kb on - strand, within MMJJ_RS02985 at 556.611 kb on + strand, within MMJJ_RS02985 at 556.673 kb on - strand, within MMJJ_RS02985 at 556.673 kb on - strand, within MMJJ_RS02985 at 556.730 kb on - strand, within MMJJ_RS02985 at 556.739 kb on - strand, within MMJJ_RS02985 at 556.739 kb on - strand, within MMJJ_RS02985 at 556.740 kb on + strand, within MMJJ_RS02985 at 556.740 kb on + strand, within MMJJ_RS02985 at 556.769 kb on - strand, within MMJJ_RS02985 at 556.772 kb on - strand, within MMJJ_RS02985 at 556.773 kb on + strand, within MMJJ_RS02985 at 556.799 kb on - strand, within MMJJ_RS02985 at 556.805 kb on - strand, within MMJJ_RS02985 at 556.805 kb on - strand, within MMJJ_RS02985 at 556.806 kb on + strand, within MMJJ_RS02985 at 556.847 kb on + strand, within MMJJ_RS02985 at 556.847 kb on + strand, within MMJJ_RS02985 at 556.847 kb on + strand, within MMJJ_RS02985 at 556.850 kb on - strand, within MMJJ_RS02985 at 556.851 kb on + strand, within MMJJ_RS02985 at 556.861 kb on + strand, within MMJJ_RS02985 at 556.884 kb on + strand, within MMJJ_RS02985 at 556.886 kb on - strand, within MMJJ_RS02985 at 556.994 kb on + strand, within MMJJ_RS02985 at 557.061 kb on + strand, within MMJJ_RS02985 at 557.093 kb on - strand at 557.099 kb on - strand at 557.099 kb on - strand at 557.100 kb on + strand at 557.100 kb on + strand at 557.100 kb on + strand at 557.121 kb on + strand at 557.139 kb on - strand at 557.139 kb on - strand at 557.139 kb on - strand at 557.144 kb on - strand at 557.149 kb on + strand at 557.171 kb on - strand at 557.194 kb on - strand at 557.203 kb on - strand at 557.203 kb on - strand at 557.203 kb on - strand at 557.236 kb on - strand at 557.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 554,919 - +1.3 554,919 - +1.5 554,919 - -1.7 554,919 - -1.3 554,919 - +0.8 554,919 - -2.0 554,919 - +0.8 554,919 - -0.5 554,919 - -1.5 554,920 + +2.9 554,920 + +0.3 554,920 + +1.0 554,920 + -0.1 554,922 + -2.9 554,944 - +1.7 554,945 + -0.5 554,945 + +1.4 554,946 - -0.3 554,946 - -2.5 554,946 - +0.1 554,946 - +1.2 554,947 + +3.2 554,947 + -0.7 554,960 - +2.8 554,960 - -0.1 554,965 + -2.3 554,965 + -1.5 554,968 - -0.7 554,968 - -3.0 554,975 + +1.3 554,992 - -0.2 554,992 - -1.8 554,992 - -1.0 554,995 - +0.3 554,995 - +1.3 555,011 - -1.5 555,011 - -1.8 555,012 + -0.9 555,012 + +2.8 555,041 - MMJJ_RS02980 0.10 +0.2 555,071 - MMJJ_RS02980 0.14 -1.3 555,071 - MMJJ_RS02980 0.14 +2.3 555,071 - MMJJ_RS02980 0.14 -1.3 555,071 - MMJJ_RS02980 0.14 +0.5 555,072 + MMJJ_RS02980 0.14 -1.1 555,072 + MMJJ_RS02980 0.14 +0.5 555,072 + MMJJ_RS02980 0.14 -0.4 555,072 + MMJJ_RS02980 0.14 +1.1 555,072 + MMJJ_RS02980 0.14 +1.3 555,094 - MMJJ_RS02980 0.17 -1.5 555,100 - MMJJ_RS02980 0.18 -2.3 555,105 + MMJJ_RS02980 0.19 -0.2 555,138 + MMJJ_RS02980 0.23 +2.8 555,182 + MMJJ_RS02980 0.29 +2.3 555,213 + MMJJ_RS02980 0.33 -0.1 555,243 + MMJJ_RS02980 0.37 +1.5 555,243 + MMJJ_RS02980 0.37 -0.0 555,326 + MMJJ_RS02980 0.48 +0.2 555,344 - MMJJ_RS02980 0.50 +0.5 555,344 - MMJJ_RS02980 0.50 -2.9 555,378 + MMJJ_RS02980 0.54 -2.5 555,465 - MMJJ_RS02980 0.66 -0.5 555,523 - MMJJ_RS02980 0.73 -2.7 555,523 - MMJJ_RS02980 0.73 +3.5 555,524 + MMJJ_RS02980 0.74 -1.7 555,647 + MMJJ_RS02980 0.90 -2.5 555,760 - +0.2 555,761 + +3.6 555,791 + -3.5 555,794 - +0.4 555,803 + +1.6 555,812 + +2.0 555,844 - +1.5 555,844 - +2.8 555,847 + +1.8 555,847 + -1.2 555,847 + +2.1 555,849 + +2.3 555,855 - -1.9 555,855 - +2.1 555,856 + +1.3 555,863 + +0.9 555,863 + +1.3 555,872 - -1.0 555,872 - +1.3 555,872 - +3.4 555,873 + -2.7 555,944 - -0.3 555,975 + -0.3 556,029 - MMJJ_RS02985 0.10 +2.9 556,110 - MMJJ_RS02985 0.17 +1.1 556,110 - MMJJ_RS02985 0.17 -1.9 556,111 + MMJJ_RS02985 0.17 -1.1 556,126 - MMJJ_RS02985 0.18 +1.1 556,126 - MMJJ_RS02985 0.18 +5.1 556,127 + MMJJ_RS02985 0.18 +2.8 556,233 - MMJJ_RS02985 0.26 +0.6 556,261 + MMJJ_RS02985 0.28 +4.8 556,264 - MMJJ_RS02985 0.28 -0.5 556,347 + MMJJ_RS02985 0.35 +1.4 556,347 + MMJJ_RS02985 0.35 +1.3 556,373 + MMJJ_RS02985 0.37 +3.9 556,409 - MMJJ_RS02985 0.39 -3.2 556,471 - MMJJ_RS02985 0.44 -1.7 556,471 - MMJJ_RS02985 0.44 +1.7 556,471 - MMJJ_RS02985 0.44 +0.8 556,472 + MMJJ_RS02985 0.44 +0.7 556,472 + MMJJ_RS02985 0.44 -0.3 556,472 + MMJJ_RS02985 0.44 -0.9 556,472 + MMJJ_RS02985 0.44 +6.0 556,472 + MMJJ_RS02985 0.44 +0.7 556,472 + MMJJ_RS02985 0.44 +1.9 556,472 + MMJJ_RS02985 0.44 +0.7 556,495 + MMJJ_RS02985 0.46 -2.7 556,562 - MMJJ_RS02985 0.51 -2.3 556,563 + MMJJ_RS02985 0.51 -1.6 556,607 - MMJJ_RS02985 0.55 -0.0 556,610 - MMJJ_RS02985 0.55 +2.3 556,611 + MMJJ_RS02985 0.55 +2.3 556,673 - MMJJ_RS02985 0.60 -1.3 556,673 - MMJJ_RS02985 0.60 -3.1 556,730 - MMJJ_RS02985 0.64 +1.6 556,739 - MMJJ_RS02985 0.65 -0.5 556,739 - MMJJ_RS02985 0.65 +1.8 556,740 + MMJJ_RS02985 0.65 +1.2 556,740 + MMJJ_RS02985 0.65 -2.3 556,769 - MMJJ_RS02985 0.67 -2.6 556,772 - MMJJ_RS02985 0.67 -0.3 556,773 + MMJJ_RS02985 0.67 +1.7 556,799 - MMJJ_RS02985 0.69 +1.8 556,805 - MMJJ_RS02985 0.70 +0.5 556,805 - MMJJ_RS02985 0.70 +0.7 556,806 + MMJJ_RS02985 0.70 +3.0 556,847 + MMJJ_RS02985 0.73 -2.9 556,847 + MMJJ_RS02985 0.73 +1.5 556,847 + MMJJ_RS02985 0.73 +1.6 556,850 - MMJJ_RS02985 0.73 +2.9 556,851 + MMJJ_RS02985 0.73 +0.2 556,861 + MMJJ_RS02985 0.74 +0.8 556,884 + MMJJ_RS02985 0.76 +2.3 556,886 - MMJJ_RS02985 0.76 +1.3 556,994 + MMJJ_RS02985 0.84 -0.5 557,061 + MMJJ_RS02985 0.90 +0.3 557,093 - -2.2 557,099 - +1.9 557,099 - -2.0 557,100 + +2.4 557,100 + -2.6 557,100 + +2.0 557,121 + +4.1 557,139 - +2.0 557,139 - +1.4 557,139 - +2.9 557,144 - +3.0 557,149 + -1.6 557,171 - +1.4 557,194 - +0.2 557,203 - +0.1 557,203 - +2.5 557,203 - +2.8 557,236 - +1.5 557,248 - -1.7
Or see this region's nucleotide sequence