Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02955 and MMJJ_RS02960 overlap by 14 nucleotides MMJJ_RS02960 and MMJJ_RS02965 are separated by 0 nucleotides MMJJ_RS02965 and MMJJ_RS02970 are separated by 266 nucleotides MMJJ_RS02970 and MMJJ_RS02975 are separated by 38 nucleotides
MMJJ_RS02955: MMJJ_RS02955 - glutamate-cysteine ligase family protein, at 551,250 to 552,353
_RS02955
MMJJ_RS02960: MMJJ_RS02960 - RimK family alpha-L-glutamate ligase, at 552,340 to 553,290
_RS02960
MMJJ_RS02965: MMJJ_RS02965 - RimK-like ATPgrasp N-terminal domain-containing protein, at 553,291 to 553,896
_RS02965
MMJJ_RS02970: MMJJ_RS02970 - DUF378 domain-containing protein, at 554,163 to 554,411
_RS02970
MMJJ_RS02975: MMJJ_RS02975 - NAD(P)H-dependent oxidoreductase, at 554,450 to 554,944
_RS02975
Position (kb) 553
554 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 552.376 kb on - strand at 552.376 kb on - strand at 552.432 kb on - strand at 552.433 kb on + strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.447 kb on - strand, within MMJJ_RS02960 at 552.506 kb on + strand, within MMJJ_RS02960 at 552.514 kb on - strand, within MMJJ_RS02960 at 552.515 kb on + strand, within MMJJ_RS02960 at 552.515 kb on + strand, within MMJJ_RS02960 at 552.515 kb on + strand, within MMJJ_RS02960 at 552.518 kb on - strand, within MMJJ_RS02960 at 552.518 kb on - strand, within MMJJ_RS02960 at 552.518 kb on - strand, within MMJJ_RS02960 at 552.598 kb on - strand, within MMJJ_RS02960 at 552.601 kb on + strand, within MMJJ_RS02960 at 552.629 kb on + strand, within MMJJ_RS02960 at 552.642 kb on - strand, within MMJJ_RS02960 at 552.643 kb on + strand, within MMJJ_RS02960 at 552.648 kb on + strand, within MMJJ_RS02960 at 552.648 kb on + strand, within MMJJ_RS02960 at 552.650 kb on + strand, within MMJJ_RS02960 at 552.676 kb on - strand, within MMJJ_RS02960 at 552.676 kb on - strand, within MMJJ_RS02960 at 552.705 kb on + strand, within MMJJ_RS02960 at 552.705 kb on + strand, within MMJJ_RS02960 at 552.717 kb on + strand, within MMJJ_RS02960 at 552.734 kb on + strand, within MMJJ_RS02960 at 552.787 kb on - strand, within MMJJ_RS02960 at 552.787 kb on - strand, within MMJJ_RS02960 at 552.787 kb on - strand, within MMJJ_RS02960 at 552.817 kb on - strand, within MMJJ_RS02960 at 552.835 kb on - strand, within MMJJ_RS02960 at 552.893 kb on + strand, within MMJJ_RS02960 at 552.940 kb on + strand, within MMJJ_RS02960 at 552.940 kb on + strand, within MMJJ_RS02960 at 552.940 kb on + strand, within MMJJ_RS02960 at 552.979 kb on - strand, within MMJJ_RS02960 at 552.979 kb on - strand, within MMJJ_RS02960 at 552.979 kb on - strand, within MMJJ_RS02960 at 552.984 kb on - strand, within MMJJ_RS02960 at 552.992 kb on + strand, within MMJJ_RS02960 at 553.005 kb on + strand, within MMJJ_RS02960 at 553.013 kb on + strand, within MMJJ_RS02960 at 553.051 kb on - strand, within MMJJ_RS02960 at 553.099 kb on - strand, within MMJJ_RS02960 at 553.126 kb on - strand, within MMJJ_RS02960 at 553.151 kb on + strand, within MMJJ_RS02960 at 553.160 kb on + strand, within MMJJ_RS02960 at 553.209 kb on - strand at 553.248 kb on - strand at 553.248 kb on - strand at 553.248 kb on - strand at 553.249 kb on + strand at 553.249 kb on + strand at 553.480 kb on - strand, within MMJJ_RS02965 at 553.481 kb on + strand, within MMJJ_RS02965 at 553.611 kb on - strand, within MMJJ_RS02965 at 553.613 kb on - strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.616 kb on - strand, within MMJJ_RS02965 at 553.616 kb on - strand, within MMJJ_RS02965 at 553.617 kb on + strand, within MMJJ_RS02965 at 553.617 kb on + strand, within MMJJ_RS02965 at 553.638 kb on + strand, within MMJJ_RS02965 at 553.643 kb on + strand, within MMJJ_RS02965 at 553.643 kb on + strand, within MMJJ_RS02965 at 553.747 kb on + strand, within MMJJ_RS02965 at 553.749 kb on + strand, within MMJJ_RS02965 at 554.009 kb on - strand at 554.009 kb on - strand at 554.010 kb on + strand at 554.010 kb on + strand at 554.010 kb on + strand at 554.011 kb on - strand at 554.023 kb on - strand at 554.024 kb on + strand at 554.095 kb on - strand at 554.095 kb on - strand at 554.095 kb on - strand at 554.096 kb on + strand at 554.096 kb on + strand at 554.097 kb on - strand at 554.098 kb on + strand at 554.116 kb on + strand at 554.120 kb on - strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.122 kb on - strand at 554.123 kb on + strand at 554.147 kb on + strand at 554.147 kb on + strand at 554.160 kb on + strand at 554.181 kb on + strand at 554.242 kb on - strand, within MMJJ_RS02970 at 554.246 kb on - strand, within MMJJ_RS02970 at 554.247 kb on + strand, within MMJJ_RS02970 at 554.247 kb on + strand, within MMJJ_RS02970 at 554.260 kb on - strand, within MMJJ_RS02970 at 554.273 kb on - strand, within MMJJ_RS02970 at 554.273 kb on - strand, within MMJJ_RS02970 at 554.274 kb on + strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.300 kb on - strand, within MMJJ_RS02970 at 554.302 kb on - strand, within MMJJ_RS02970 at 554.302 kb on - strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.318 kb on + strand, within MMJJ_RS02970 at 554.321 kb on + strand, within MMJJ_RS02970 at 554.353 kb on - strand, within MMJJ_RS02970 at 554.353 kb on - strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.355 kb on - strand, within MMJJ_RS02970 at 554.356 kb on + strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.358 kb on + strand, within MMJJ_RS02970 at 554.358 kb on + strand, within MMJJ_RS02970 at 554.372 kb on + strand, within MMJJ_RS02970 at 554.380 kb on - strand, within MMJJ_RS02970 at 554.381 kb on + strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.392 kb on + strand at 554.392 kb on + strand at 554.392 kb on + strand at 554.395 kb on + strand at 554.427 kb on + strand at 554.469 kb on - strand at 554.476 kb on - strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.480 kb on - strand at 554.496 kb on - strand at 554.497 kb on + strand at 554.522 kb on - strand, within MMJJ_RS02975 at 554.522 kb on - strand, within MMJJ_RS02975 at 554.531 kb on - strand, within MMJJ_RS02975 at 554.532 kb on + strand, within MMJJ_RS02975 at 554.532 kb on + strand, within MMJJ_RS02975 at 554.551 kb on - strand, within MMJJ_RS02975 at 554.594 kb on + strand, within MMJJ_RS02975 at 554.594 kb on + strand, within MMJJ_RS02975 at 554.653 kb on + strand, within MMJJ_RS02975 at 554.713 kb on - strand, within MMJJ_RS02975 at 554.718 kb on + strand, within MMJJ_RS02975 at 554.888 kb on - strand, within MMJJ_RS02975 at 554.888 kb on - strand, within MMJJ_RS02975 at 554.889 kb on + strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.893 kb on + strand, within MMJJ_RS02975
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 552,376 - +0.6 552,376 - -0.4 552,432 - -2.0 552,433 + +0.1 552,434 - +0.3 552,434 - +0.7 552,434 - +2.6 552,434 - -0.3 552,434 - -2.6 552,434 - +0.8 552,435 + MMJJ_RS02960 0.10 +3.2 552,435 + MMJJ_RS02960 0.10 -0.4 552,435 + MMJJ_RS02960 0.10 +1.5 552,435 + MMJJ_RS02960 0.10 -1.3 552,435 + MMJJ_RS02960 0.10 -0.4 552,435 + MMJJ_RS02960 0.10 -1.8 552,435 + MMJJ_RS02960 0.10 -0.7 552,447 - MMJJ_RS02960 0.11 -2.2 552,506 + MMJJ_RS02960 0.17 +0.5 552,514 - MMJJ_RS02960 0.18 +1.2 552,515 + MMJJ_RS02960 0.18 +1.7 552,515 + MMJJ_RS02960 0.18 -1.7 552,515 + MMJJ_RS02960 0.18 -0.3 552,518 - MMJJ_RS02960 0.19 +0.3 552,518 - MMJJ_RS02960 0.19 +1.5 552,518 - MMJJ_RS02960 0.19 -1.0 552,598 - MMJJ_RS02960 0.27 +2.0 552,601 + MMJJ_RS02960 0.27 -1.3 552,629 + MMJJ_RS02960 0.30 +1.2 552,642 - MMJJ_RS02960 0.32 -0.4 552,643 + MMJJ_RS02960 0.32 +0.6 552,648 + MMJJ_RS02960 0.32 +1.5 552,648 + MMJJ_RS02960 0.32 -0.3 552,650 + MMJJ_RS02960 0.33 +3.2 552,676 - MMJJ_RS02960 0.35 +0.4 552,676 - MMJJ_RS02960 0.35 +1.0 552,705 + MMJJ_RS02960 0.38 -2.0 552,705 + MMJJ_RS02960 0.38 +1.3 552,717 + MMJJ_RS02960 0.40 +1.2 552,734 + MMJJ_RS02960 0.41 +0.0 552,787 - MMJJ_RS02960 0.47 +2.9 552,787 - MMJJ_RS02960 0.47 +0.3 552,787 - MMJJ_RS02960 0.47 -0.4 552,817 - MMJJ_RS02960 0.50 -2.6 552,835 - MMJJ_RS02960 0.52 +1.6 552,893 + MMJJ_RS02960 0.58 -3.2 552,940 + MMJJ_RS02960 0.63 +0.6 552,940 + MMJJ_RS02960 0.63 -1.0 552,940 + MMJJ_RS02960 0.63 +0.1 552,979 - MMJJ_RS02960 0.67 +0.5 552,979 - MMJJ_RS02960 0.67 -0.7 552,979 - MMJJ_RS02960 0.67 -1.1 552,984 - MMJJ_RS02960 0.68 +3.3 552,992 + MMJJ_RS02960 0.69 +0.2 553,005 + MMJJ_RS02960 0.70 +0.6 553,013 + MMJJ_RS02960 0.71 +0.2 553,051 - MMJJ_RS02960 0.75 +1.9 553,099 - MMJJ_RS02960 0.80 +0.5 553,126 - MMJJ_RS02960 0.83 +2.7 553,151 + MMJJ_RS02960 0.85 -1.5 553,160 + MMJJ_RS02960 0.86 +2.1 553,209 - +1.5 553,248 - -0.7 553,248 - -1.9 553,248 - -1.1 553,249 + -1.5 553,249 + -2.5 553,480 - MMJJ_RS02965 0.31 +3.9 553,481 + MMJJ_RS02965 0.31 -1.9 553,611 - MMJJ_RS02965 0.53 +2.7 553,613 - MMJJ_RS02965 0.53 -1.5 553,614 + MMJJ_RS02965 0.53 +0.9 553,614 + MMJJ_RS02965 0.53 -0.7 553,614 + MMJJ_RS02965 0.53 +2.3 553,614 + MMJJ_RS02965 0.53 +1.5 553,614 + MMJJ_RS02965 0.53 +0.4 553,614 + MMJJ_RS02965 0.53 +2.2 553,616 - MMJJ_RS02965 0.54 +4.2 553,616 - MMJJ_RS02965 0.54 +2.1 553,617 + MMJJ_RS02965 0.54 -1.5 553,617 + MMJJ_RS02965 0.54 +1.8 553,638 + MMJJ_RS02965 0.57 +0.6 553,643 + MMJJ_RS02965 0.58 -1.6 553,643 + MMJJ_RS02965 0.58 -0.5 553,747 + MMJJ_RS02965 0.75 -2.5 553,749 + MMJJ_RS02965 0.76 +0.5 554,009 - -0.4 554,009 - +4.5 554,010 + +1.2 554,010 + +0.4 554,010 + -1.8 554,011 - -0.8 554,023 - +2.8 554,024 + -1.1 554,095 - -3.8 554,095 - -1.3 554,095 - +2.9 554,096 + -0.2 554,096 + +2.5 554,097 - -3.5 554,098 + +0.3 554,116 + -0.3 554,120 - +1.1 554,121 + +0.0 554,121 + -1.1 554,121 + -1.0 554,121 + +0.6 554,122 - +1.0 554,123 + -0.6 554,147 + -0.1 554,147 + +3.4 554,160 + +1.3 554,181 + +1.7 554,242 - MMJJ_RS02970 0.32 -0.4 554,246 - MMJJ_RS02970 0.33 -2.0 554,247 + MMJJ_RS02970 0.34 +1.8 554,247 + MMJJ_RS02970 0.34 -1.9 554,260 - MMJJ_RS02970 0.39 +1.4 554,273 - MMJJ_RS02970 0.44 +2.6 554,273 - MMJJ_RS02970 0.44 +2.6 554,274 + MMJJ_RS02970 0.45 +3.0 554,297 - MMJJ_RS02970 0.54 +0.5 554,297 - MMJJ_RS02970 0.54 -1.2 554,297 - MMJJ_RS02970 0.54 -2.3 554,297 - MMJJ_RS02970 0.54 +1.1 554,297 - MMJJ_RS02970 0.54 -1.0 554,298 + MMJJ_RS02970 0.54 +1.3 554,298 + MMJJ_RS02970 0.54 -2.1 554,298 + MMJJ_RS02970 0.54 +1.1 554,300 - MMJJ_RS02970 0.55 +1.3 554,302 - MMJJ_RS02970 0.56 +2.5 554,302 - MMJJ_RS02970 0.56 +2.8 554,303 + MMJJ_RS02970 0.56 -3.1 554,303 + MMJJ_RS02970 0.56 -2.4 554,303 + MMJJ_RS02970 0.56 -2.4 554,303 + MMJJ_RS02970 0.56 -0.4 554,303 + MMJJ_RS02970 0.56 +0.9 554,318 + MMJJ_RS02970 0.62 -0.3 554,321 + MMJJ_RS02970 0.63 -0.5 554,353 - MMJJ_RS02970 0.76 -0.2 554,353 - MMJJ_RS02970 0.76 +0.6 554,354 + MMJJ_RS02970 0.77 -1.5 554,354 + MMJJ_RS02970 0.77 -0.8 554,354 + MMJJ_RS02970 0.77 -1.3 554,355 - MMJJ_RS02970 0.77 -1.7 554,356 + MMJJ_RS02970 0.78 -2.3 554,357 - MMJJ_RS02970 0.78 +2.1 554,357 - MMJJ_RS02970 0.78 -3.3 554,357 - MMJJ_RS02970 0.78 -0.8 554,358 + MMJJ_RS02970 0.78 +3.8 554,358 + MMJJ_RS02970 0.78 -2.9 554,372 + MMJJ_RS02970 0.84 +0.7 554,380 - MMJJ_RS02970 0.87 -1.2 554,381 + MMJJ_RS02970 0.88 -0.3 554,382 - MMJJ_RS02970 0.88 -0.3 554,382 - MMJJ_RS02970 0.88 -1.8 554,382 - MMJJ_RS02970 0.88 -3.0 554,382 - MMJJ_RS02970 0.88 -0.5 554,382 - MMJJ_RS02970 0.88 -0.3 554,382 - MMJJ_RS02970 0.88 +0.1 554,382 - MMJJ_RS02970 0.88 -0.2 554,383 + MMJJ_RS02970 0.88 -1.6 554,383 + MMJJ_RS02970 0.88 +2.8 554,383 + MMJJ_RS02970 0.88 +2.3 554,383 + MMJJ_RS02970 0.88 -2.4 554,383 + MMJJ_RS02970 0.88 -1.4 554,383 + MMJJ_RS02970 0.88 +1.8 554,383 + MMJJ_RS02970 0.88 +0.3 554,383 + MMJJ_RS02970 0.88 -1.9 554,392 + +0.0 554,392 + +3.5 554,392 + +2.9 554,395 + +1.3 554,427 + +1.1 554,469 - -1.9 554,476 - -0.6 554,477 + +0.7 554,477 + +1.6 554,477 + +1.0 554,477 + +1.7 554,477 + +2.1 554,480 - -1.0 554,496 - -2.1 554,497 + -1.3 554,522 - MMJJ_RS02975 0.15 -1.4 554,522 - MMJJ_RS02975 0.15 +1.0 554,531 - MMJJ_RS02975 0.16 -1.4 554,532 + MMJJ_RS02975 0.17 -1.7 554,532 + MMJJ_RS02975 0.17 +3.3 554,551 - MMJJ_RS02975 0.20 -0.6 554,594 + MMJJ_RS02975 0.29 -1.7 554,594 + MMJJ_RS02975 0.29 -2.3 554,653 + MMJJ_RS02975 0.41 -1.3 554,713 - MMJJ_RS02975 0.53 -2.1 554,718 + MMJJ_RS02975 0.54 +2.2 554,888 - MMJJ_RS02975 0.88 -0.5 554,888 - MMJJ_RS02975 0.88 -2.0 554,889 + MMJJ_RS02975 0.89 +0.7 554,892 - MMJJ_RS02975 0.89 -1.0 554,892 - MMJJ_RS02975 0.89 +1.8 554,892 - MMJJ_RS02975 0.89 -0.6 554,892 - MMJJ_RS02975 0.89 -1.1 554,893 + MMJJ_RS02975 0.89 -1.3
Or see this region's nucleotide sequence