Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotides MMJJ_RS02900 and MMJJ_RS02905 are separated by 33 nucleotides MMJJ_RS02905 and MMJJ_RS02910 are separated by 132 nucleotides MMJJ_RS02910 and MMJJ_RS02915 are separated by 206 nucleotides
MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570
_RS02895
MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011
_RS02900
MMJJ_RS02905: MMJJ_RS02905 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,045 to 546,404
_RS02905
MMJJ_RS02910: MMJJ_RS02910 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,537 to 546,938
_RS02910
MMJJ_RS02915: MMJJ_RS02915 - hypothetical protein, at 547,145 to 547,381
_RS02915
Position (kb) 546
547 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 545.107 kb on - strand, within MMJJ_RS02895 at 545.156 kb on + strand, within MMJJ_RS02895 at 545.207 kb on + strand, within MMJJ_RS02895 at 545.227 kb on - strand, within MMJJ_RS02895 at 545.227 kb on - strand, within MMJJ_RS02895 at 545.239 kb on - strand, within MMJJ_RS02895 at 545.240 kb on + strand, within MMJJ_RS02895 at 545.252 kb on - strand, within MMJJ_RS02895 at 545.273 kb on + strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.292 kb on + strand, within MMJJ_RS02895 at 545.356 kb on + strand, within MMJJ_RS02895 at 545.357 kb on - strand, within MMJJ_RS02895 at 545.358 kb on + strand, within MMJJ_RS02895 at 545.358 kb on + strand, within MMJJ_RS02895 at 545.359 kb on - strand at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.360 kb on + strand, within MMJJ_RS02895 at 545.363 kb on + strand, within MMJJ_RS02895 at 545.370 kb on + strand, within MMJJ_RS02895 at 545.381 kb on - strand, within MMJJ_RS02895 at 545.438 kb on + strand, within MMJJ_RS02895 at 545.460 kb on + strand, within MMJJ_RS02895 at 545.462 kb on - strand, within MMJJ_RS02895 at 545.468 kb on + strand, within MMJJ_RS02895 at 545.471 kb on - strand, within MMJJ_RS02895 at 545.472 kb on + strand, within MMJJ_RS02895 at 545.472 kb on + strand, within MMJJ_RS02895 at 545.501 kb on + strand at 545.531 kb on - strand at 545.568 kb on - strand at 545.588 kb on - strand at 545.640 kb on + strand at 545.641 kb on - strand at 545.644 kb on + strand at 545.691 kb on - strand at 545.697 kb on + strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.703 kb on + strand at 545.703 kb on + strand at 545.703 kb on + strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.735 kb on - strand at 545.736 kb on + strand at 545.775 kb on + strand, within MMJJ_RS02900 at 545.785 kb on + strand, within MMJJ_RS02900 at 545.801 kb on - strand, within MMJJ_RS02900 at 545.801 kb on - strand, within MMJJ_RS02900 at 545.802 kb on + strand, within MMJJ_RS02900 at 545.813 kb on - strand, within MMJJ_RS02900 at 545.824 kb on - strand, within MMJJ_RS02900 at 545.825 kb on + strand, within MMJJ_RS02900 at 545.846 kb on - strand, within MMJJ_RS02900 at 545.853 kb on + strand, within MMJJ_RS02900 at 545.867 kb on - strand, within MMJJ_RS02900 at 545.874 kb on + strand, within MMJJ_RS02900 at 545.874 kb on + strand, within MMJJ_RS02900 at 545.875 kb on - strand, within MMJJ_RS02900 at 545.875 kb on - strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 545.876 kb on + strand, within MMJJ_RS02900 at 546.023 kb on + strand at 546.064 kb on - strand at 546.233 kb on - strand, within MMJJ_RS02905 at 546.328 kb on - strand, within MMJJ_RS02905 at 546.328 kb on - strand, within MMJJ_RS02905 at 546.329 kb on + strand, within MMJJ_RS02905 at 546.329 kb on + strand, within MMJJ_RS02905 at 546.344 kb on + strand, within MMJJ_RS02905 at 546.352 kb on - strand, within MMJJ_RS02905 at 546.439 kb on + strand at 546.443 kb on + strand at 546.447 kb on - strand at 546.449 kb on - strand at 546.450 kb on + strand at 546.450 kb on + strand at 546.451 kb on - strand at 546.451 kb on - strand at 546.478 kb on - strand at 546.513 kb on - strand at 546.552 kb on - strand at 546.552 kb on - strand at 546.552 kb on - strand at 546.553 kb on + strand at 546.553 kb on + strand at 546.553 kb on + strand at 546.596 kb on - strand, within MMJJ_RS02910 at 546.612 kb on + strand, within MMJJ_RS02910 at 546.676 kb on - strand, within MMJJ_RS02910 at 546.712 kb on - strand, within MMJJ_RS02910 at 546.715 kb on - strand, within MMJJ_RS02910 at 546.716 kb on + strand, within MMJJ_RS02910 at 546.770 kb on - strand, within MMJJ_RS02910 at 546.781 kb on - strand, within MMJJ_RS02910 at 546.800 kb on - strand, within MMJJ_RS02910 at 546.801 kb on + strand, within MMJJ_RS02910 at 546.802 kb on - strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.803 kb on + strand, within MMJJ_RS02910 at 546.805 kb on - strand, within MMJJ_RS02910 at 546.808 kb on - strand, within MMJJ_RS02910 at 546.809 kb on + strand, within MMJJ_RS02910 at 546.809 kb on + strand, within MMJJ_RS02910 at 546.810 kb on - strand, within MMJJ_RS02910 at 546.810 kb on - strand, within MMJJ_RS02910 at 546.810 kb on - strand, within MMJJ_RS02910 at 546.811 kb on + strand, within MMJJ_RS02910 at 546.811 kb on + strand, within MMJJ_RS02910 at 546.844 kb on - strand, within MMJJ_RS02910 at 546.862 kb on - strand, within MMJJ_RS02910 at 546.864 kb on - strand, within MMJJ_RS02910 at 546.888 kb on + strand, within MMJJ_RS02910 at 546.910 kb on - strand at 546.911 kb on + strand at 546.928 kb on - strand at 546.994 kb on + strand at 547.014 kb on + strand at 547.021 kb on + strand at 547.025 kb on + strand at 547.025 kb on + strand at 547.042 kb on + strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.055 kb on - strand at 547.056 kb on + strand at 547.060 kb on - strand at 547.079 kb on - strand at 547.083 kb on + strand at 547.086 kb on - strand at 547.086 kb on - strand at 547.086 kb on - strand at 547.110 kb on - strand at 547.128 kb on - strand at 547.128 kb on - strand at 547.161 kb on - strand at 547.162 kb on + strand at 547.162 kb on + strand at 547.181 kb on - strand, within MMJJ_RS02915 at 547.181 kb on - strand, within MMJJ_RS02915 at 547.182 kb on + strand, within MMJJ_RS02915 at 547.182 kb on + strand, within MMJJ_RS02915 at 547.201 kb on - strand, within MMJJ_RS02915 at 547.229 kb on - strand, within MMJJ_RS02915 at 547.285 kb on - strand, within MMJJ_RS02915 at 547.323 kb on - strand, within MMJJ_RS02915 at 547.323 kb on - strand, within MMJJ_RS02915 at 547.323 kb on - strand, within MMJJ_RS02915 at 547.324 kb on + strand, within MMJJ_RS02915 at 547.324 kb on + strand, within MMJJ_RS02915 at 547.375 kb on + strand at 547.384 kb on + strand at 547.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 545,107 - MMJJ_RS02895 0.45 -1.0 545,156 + MMJJ_RS02895 0.51 +4.6 545,207 + MMJJ_RS02895 0.57 +1.4 545,227 - MMJJ_RS02895 0.59 +1.2 545,227 - MMJJ_RS02895 0.59 -0.5 545,239 - MMJJ_RS02895 0.61 -0.3 545,240 + MMJJ_RS02895 0.61 -3.4 545,252 - MMJJ_RS02895 0.62 +0.3 545,273 + MMJJ_RS02895 0.65 -3.1 545,291 - MMJJ_RS02895 0.67 +0.7 545,291 - MMJJ_RS02895 0.67 +1.2 545,291 - MMJJ_RS02895 0.67 +0.4 545,292 + MMJJ_RS02895 0.67 -1.4 545,356 + MMJJ_RS02895 0.75 -1.3 545,357 - MMJJ_RS02895 0.75 +3.4 545,358 + MMJJ_RS02895 0.75 -1.4 545,358 + MMJJ_RS02895 0.75 -1.2 545,359 - +1.3 545,359 - MMJJ_RS02895 0.75 +1.0 545,359 - MMJJ_RS02895 0.75 +1.7 545,359 - MMJJ_RS02895 0.75 +0.9 545,359 - MMJJ_RS02895 0.75 -1.6 545,360 + MMJJ_RS02895 0.75 -1.3 545,363 + MMJJ_RS02895 0.75 +0.1 545,370 + MMJJ_RS02895 0.76 -2.7 545,381 - MMJJ_RS02895 0.78 +4.5 545,438 + MMJJ_RS02895 0.84 -0.5 545,460 + MMJJ_RS02895 0.87 +2.3 545,462 - MMJJ_RS02895 0.87 +1.4 545,468 + MMJJ_RS02895 0.88 +1.1 545,471 - MMJJ_RS02895 0.88 -1.0 545,472 + MMJJ_RS02895 0.88 +1.2 545,472 + MMJJ_RS02895 0.88 -2.3 545,501 + +1.3 545,531 - -2.3 545,568 - -0.3 545,588 - +2.5 545,640 + +1.7 545,641 - +3.1 545,644 + -1.7 545,691 - +2.0 545,697 + +0.3 545,702 - +1.1 545,702 - -0.5 545,702 - -0.8 545,702 - +0.8 545,702 - -3.8 545,702 - +1.6 545,703 + +2.9 545,703 + +2.2 545,703 + +4.2 545,735 - -0.1 545,735 - +2.5 545,735 - -3.0 545,735 - -2.7 545,736 + -1.6 545,775 + MMJJ_RS02900 0.17 +2.6 545,785 + MMJJ_RS02900 0.20 +0.8 545,801 - MMJJ_RS02900 0.26 -0.6 545,801 - MMJJ_RS02900 0.26 -0.5 545,802 + MMJJ_RS02900 0.26 +0.0 545,813 - MMJJ_RS02900 0.30 -0.6 545,824 - MMJJ_RS02900 0.34 +1.3 545,825 + MMJJ_RS02900 0.34 -3.5 545,846 - MMJJ_RS02900 0.42 +2.9 545,853 + MMJJ_RS02900 0.44 -2.4 545,867 - MMJJ_RS02900 0.49 +1.2 545,874 + MMJJ_RS02900 0.52 +2.4 545,874 + MMJJ_RS02900 0.52 -1.8 545,875 - MMJJ_RS02900 0.52 +1.2 545,875 - MMJJ_RS02900 0.52 -0.7 545,876 + MMJJ_RS02900 0.52 +0.6 545,876 + MMJJ_RS02900 0.52 -1.9 545,876 + MMJJ_RS02900 0.52 +2.0 545,876 + MMJJ_RS02900 0.52 -2.9 545,876 + MMJJ_RS02900 0.52 -1.0 546,023 + +2.0 546,064 - +2.4 546,233 - MMJJ_RS02905 0.52 +2.5 546,328 - MMJJ_RS02905 0.79 -1.3 546,328 - MMJJ_RS02905 0.79 -0.2 546,329 + MMJJ_RS02905 0.79 -0.7 546,329 + MMJJ_RS02905 0.79 +0.1 546,344 + MMJJ_RS02905 0.83 +6.3 546,352 - MMJJ_RS02905 0.85 +0.8 546,439 + +3.1 546,443 + +0.4 546,447 - -2.5 546,449 - -0.1 546,450 + -2.7 546,450 + -0.1 546,451 - -1.0 546,451 - +1.3 546,478 - +2.9 546,513 - -1.5 546,552 - +2.0 546,552 - -2.4 546,552 - -1.6 546,553 + -1.4 546,553 + -1.5 546,553 + -0.6 546,596 - MMJJ_RS02910 0.15 +1.7 546,612 + MMJJ_RS02910 0.19 +0.7 546,676 - MMJJ_RS02910 0.35 -0.1 546,712 - MMJJ_RS02910 0.44 +0.1 546,715 - MMJJ_RS02910 0.44 +1.8 546,716 + MMJJ_RS02910 0.45 +0.6 546,770 - MMJJ_RS02910 0.58 +2.2 546,781 - MMJJ_RS02910 0.61 -0.6 546,800 - MMJJ_RS02910 0.65 -0.4 546,801 + MMJJ_RS02910 0.66 +1.4 546,802 - MMJJ_RS02910 0.66 -2.5 546,803 + MMJJ_RS02910 0.66 -1.9 546,803 + MMJJ_RS02910 0.66 -1.2 546,803 + MMJJ_RS02910 0.66 -0.3 546,803 + MMJJ_RS02910 0.66 +1.2 546,803 + MMJJ_RS02910 0.66 -0.8 546,805 - MMJJ_RS02910 0.67 -4.2 546,808 - MMJJ_RS02910 0.67 +1.0 546,809 + MMJJ_RS02910 0.68 -0.0 546,809 + MMJJ_RS02910 0.68 +0.3 546,810 - MMJJ_RS02910 0.68 +3.1 546,810 - MMJJ_RS02910 0.68 +2.6 546,810 - MMJJ_RS02910 0.68 -0.2 546,811 + MMJJ_RS02910 0.68 -0.3 546,811 + MMJJ_RS02910 0.68 +0.6 546,844 - MMJJ_RS02910 0.76 +0.3 546,862 - MMJJ_RS02910 0.81 +2.5 546,864 - MMJJ_RS02910 0.81 -2.1 546,888 + MMJJ_RS02910 0.87 -0.5 546,910 - -2.9 546,911 + +2.3 546,928 - -2.6 546,994 + +0.6 547,014 + -0.7 547,021 + +0.1 547,025 + -0.3 547,025 + -1.3 547,042 + +3.1 547,043 - -1.3 547,043 - -1.0 547,055 - +1.6 547,056 + +2.6 547,060 - +3.3 547,079 - -1.1 547,083 + -2.1 547,086 - +0.4 547,086 - -2.1 547,086 - +0.5 547,110 - +1.9 547,128 - +0.7 547,128 - -0.9 547,161 - +3.1 547,162 + -0.9 547,162 + -1.3 547,181 - MMJJ_RS02915 0.15 -0.8 547,181 - MMJJ_RS02915 0.15 -1.7 547,182 + MMJJ_RS02915 0.16 -2.2 547,182 + MMJJ_RS02915 0.16 +1.2 547,201 - MMJJ_RS02915 0.24 -1.9 547,229 - MMJJ_RS02915 0.35 +0.3 547,285 - MMJJ_RS02915 0.59 +2.7 547,323 - MMJJ_RS02915 0.75 +1.1 547,323 - MMJJ_RS02915 0.75 -0.7 547,323 - MMJJ_RS02915 0.75 -1.5 547,324 + MMJJ_RS02915 0.76 +0.7 547,324 + MMJJ_RS02915 0.76 +3.1 547,375 + +3.2 547,384 + -2.8 547,384 + +1.8
Or see this region's nucleotide sequence