Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02860

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
538,900	+				+1.1
538,900	+				+0.3
538,943	-				-0.3
538,950	+				-1.3
538,953	+				-2.6
538,957	-				+0.9
538,957	-				-1.0
538,965	-				-0.7
538,975	-				+2.4
538,976	+				-2.3
538,992	-				-0.4
538,992	-				+2.2
538,992	-				+2.5
538,992	-				-1.4
538,992	-				-2.2
538,992	-				+0.3
538,992	-				+0.6
538,992	-				-1.3
538,993	+				-1.0
538,993	+				+1.2
538,993	+				+2.1
538,993	+				+1.1
538,993	+				-1.0
538,993	+				+5.8
538,993	+				+3.4
538,994	-				-1.0
538,995	+				-0.3
538,995	+				-2.7
538,995	+				+0.3
538,998	-				+0.8
538,999	+				-2.2
539,001	-				+1.1
539,001	-				+0.2
539,025	+				-0.8
539,028	-				+0.1
539,028	-				+3.2
539,055	-				+0.4
539,059	-				-0.9
539,059	-				+2.9
539,059	-				+0.2
539,059	-				+3.7
539,059	-				-2.8
539,060	+				+2.3
539,060	+				-1.4
539,060	+				-1.0
539,108	-				-0.1
539,116	-				-0.8
539,116	-				-1.4
539,118	-				-3.5
539,118	-				+1.2
539,118	-				+2.2
539,118	-				+2.1
539,119	+				+0.5
539,119	+				-1.0
539,139	+				+2.2
539,140	-				-3.0
539,141	+				-0.0
539,210	-				-1.3
539,210	-				-0.1
539,211	+				+1.9
539,211	+				-0.4
539,221	-				-1.5
539,226	+				-0.0
539,226	+				+0.6
539,226	+				-1.1
539,229	-				-1.0
539,230	+				-0.7
539,230	+				-0.8
539,230	+				-2.0
539,233	-				+2.7
539,234	+				-2.8
539,243	-				+2.0
539,244	+				-1.8
539,244	+				+1.7
539,244	+				-0.3
539,244	+				-0.7
539,244	+				+5.6
539,254	-				-2.2
539,264	-				-2.7
539,265	+				+1.3
539,265	+				-0.7
539,265	+				-0.7
539,265	+				+1.7
539,265	+				+1.2
539,266	-				-0.5
539,266	-				-0.2
539,266	-				+2.0
539,267	+				+0.7
539,267	+				+1.3
539,267	+				+2.3
539,268	-				+3.5
539,268	-				-0.8
539,268	-				+0.3
539,268	-				+2.0
539,269	+				+1.2
539,269	+				+3.1
539,269	+				-0.8
539,269	+				-1.1
539,273	-				-0.2
539,274	+				+0.9
539,278	-				-2.1
539,323	-				+2.5
539,337	-				+2.5
539,337	-				-0.1
539,367	-				-0.4
539,725	-				+1.8
539,725	-				+1.3
539,726	+				+0.2
539,726	+				-0.6
539,727	-				-0.7
539,727	-				+1.8
539,820	-				+0.8
539,821	+				-1.5
539,845	+				+1.4
539,876	+				-0.6
539,897	+		MMJJ_RS02860	0.12	-1.1
540,224	-		MMJJ_RS02860	0.71	-0.4
540,295	-		MMJJ_RS02860	0.84	+2.2
540,412	-				+2.6
540,426	+				-2.0
540,450	+				+0.7
540,452	-				+2.3
540,455	+				+0.3
540,464	-				-0.6
540,477	-				-2.7
540,478	+				-0.1
540,524	-				+0.7
540,540	-				+1.3
540,540	-				-0.7
540,540	-				-2.5
540,541	+				-2.9
540,567	-		MMJJ_RS02865	0.11	-2.2
540,712	-		MMJJ_RS02865	0.31	-0.1
540,713	+		MMJJ_RS02865	0.31	-2.0
540,814	+		MMJJ_RS02865	0.44	+1.4
540,814	+		MMJJ_RS02865	0.44	-2.8
540,923	-		MMJJ_RS02865	0.59	-2.7
540,971	-		MMJJ_RS02865	0.65	-0.5
540,972	+		MMJJ_RS02865	0.65	-0.1
541,000	-		MMJJ_RS02865	0.69	-1.1
541,000	-		MMJJ_RS02865	0.69	+0.8
541,000	-		MMJJ_RS02865	0.69	-1.2
541,000	-		MMJJ_RS02865	0.69	-1.9
541,001	+		MMJJ_RS02865	0.69	-1.7
541,069	-		MMJJ_RS02865	0.78	+1.9
541,089	+		MMJJ_RS02865	0.81	+0.8
541,089	+		MMJJ_RS02865	0.81	+0.1
541,096	+		MMJJ_RS02865	0.82	+0.7
541,096	+		MMJJ_RS02865	0.82	-1.0
541,128	+		MMJJ_RS02865	0.86	+0.1
541,149	+		MMJJ_RS02865	0.89	-0.8
541,196	+				+0.2
541,228	-				-2.2
541,260	-				-4.0
541,261	+				+0.1
541,264	+				-0.7
541,264	+				+1.3
541,264	+				-2.7
541,278	+				+1.4
541,278	+				+0.5
541,358	-				-0.5
541,367	-				-1.0
541,368	+				+1.3
541,368	+				+0.4
541,372	-				-1.2
541,373	+				-0.5