Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02845 and MMJJ_RS02850 are separated by 167 nucleotides MMJJ_RS02850 and MMJJ_RS02855 are separated by 113 nucleotides
MMJJ_RS02845: MMJJ_RS02845 - hypothetical protein, at 534,978 to 536,624
_RS02845
MMJJ_RS02850: MMJJ_RS02850 - hypothetical protein, at 536,792 to 536,989
_RS02850
MMJJ_RS02855: MMJJ_RS02855 - DEAD/DEAH box helicase, at 537,103 to 538,719
_RS02855
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 536.129 kb on + strand, within MMJJ_RS02845 at 536.138 kb on - strand, within MMJJ_RS02845 at 536.199 kb on - strand, within MMJJ_RS02845 at 536.290 kb on + strand, within MMJJ_RS02845 at 536.309 kb on - strand, within MMJJ_RS02845 at 536.309 kb on - strand at 536.310 kb on + strand, within MMJJ_RS02845 at 536.336 kb on - strand, within MMJJ_RS02845 at 536.336 kb on - strand, within MMJJ_RS02845 at 536.337 kb on + strand, within MMJJ_RS02845 at 536.355 kb on + strand, within MMJJ_RS02845 at 536.376 kb on - strand, within MMJJ_RS02845 at 536.376 kb on - strand, within MMJJ_RS02845 at 536.376 kb on - strand, within MMJJ_RS02845 at 536.376 kb on - strand, within MMJJ_RS02845 at 536.376 kb on - strand, within MMJJ_RS02845 at 536.378 kb on - strand, within MMJJ_RS02845 at 536.455 kb on - strand, within MMJJ_RS02845 at 536.456 kb on + strand, within MMJJ_RS02845 at 536.456 kb on + strand, within MMJJ_RS02845 at 536.466 kb on - strand at 536.467 kb on + strand at 536.467 kb on + strand at 536.469 kb on + strand at 536.469 kb on + strand at 536.469 kb on + strand at 536.561 kb on - strand at 536.562 kb on + strand at 536.604 kb on + strand at 536.646 kb on - strand at 536.655 kb on - strand at 536.655 kb on - strand at 536.656 kb on + strand at 536.656 kb on + strand at 536.662 kb on - strand at 536.669 kb on - strand at 536.669 kb on - strand at 536.672 kb on + strand at 536.722 kb on - strand at 536.722 kb on - strand at 536.727 kb on + strand at 536.747 kb on - strand at 536.763 kb on - strand at 536.764 kb on + strand at 536.766 kb on + strand at 536.775 kb on + strand at 536.791 kb on - strand at 536.791 kb on - strand at 536.792 kb on + strand at 536.792 kb on + strand at 536.796 kb on - strand at 536.803 kb on + strand at 536.806 kb on + strand at 536.806 kb on + strand at 536.845 kb on - strand, within MMJJ_RS02850 at 536.845 kb on - strand, within MMJJ_RS02850 at 536.845 kb on - strand, within MMJJ_RS02850 at 536.845 kb on - strand, within MMJJ_RS02850 at 536.846 kb on + strand, within MMJJ_RS02850 at 536.853 kb on - strand, within MMJJ_RS02850 at 536.853 kb on - strand, within MMJJ_RS02850 at 536.853 kb on - strand, within MMJJ_RS02850 at 536.888 kb on + strand, within MMJJ_RS02850 at 536.950 kb on - strand, within MMJJ_RS02850 at 536.951 kb on + strand, within MMJJ_RS02850 at 537.010 kb on - strand at 537.011 kb on + strand at 537.027 kb on - strand at 537.084 kb on + strand at 537.084 kb on + strand at 537.104 kb on - strand at 537.105 kb on + strand at 537.193 kb on - strand at 537.199 kb on - strand at 537.199 kb on - strand at 537.220 kb on - strand at 537.309 kb on - strand, within MMJJ_RS02855 at 537.314 kb on + strand, within MMJJ_RS02855 at 537.314 kb on + strand, within MMJJ_RS02855 at 537.319 kb on - strand, within MMJJ_RS02855 at 537.320 kb on + strand, within MMJJ_RS02855 at 537.331 kb on - strand, within MMJJ_RS02855 at 537.331 kb on - strand, within MMJJ_RS02855 at 537.436 kb on - strand, within MMJJ_RS02855 at 537.437 kb on + strand, within MMJJ_RS02855 at 537.560 kb on + strand, within MMJJ_RS02855 at 537.597 kb on - strand, within MMJJ_RS02855 at 537.597 kb on - strand, within MMJJ_RS02855 at 537.603 kb on - strand, within MMJJ_RS02855 at 537.603 kb on - strand, within MMJJ_RS02855 at 537.656 kb on - strand, within MMJJ_RS02855 at 537.660 kb on - strand, within MMJJ_RS02855 at 538.028 kb on + strand, within MMJJ_RS02855 at 538.059 kb on + strand, within MMJJ_RS02855 at 538.086 kb on - strand, within MMJJ_RS02855 at 538.152 kb on - strand, within MMJJ_RS02855 at 538.153 kb on + strand, within MMJJ_RS02855 at 538.267 kb on - strand, within MMJJ_RS02855 at 538.274 kb on + strand, within MMJJ_RS02855 at 538.278 kb on + strand, within MMJJ_RS02855 at 538.297 kb on - strand, within MMJJ_RS02855 at 538.366 kb on - strand, within MMJJ_RS02855 at 538.367 kb on + strand, within MMJJ_RS02855 at 538.482 kb on - strand, within MMJJ_RS02855 at 538.569 kb on - strand at 538.593 kb on - strand at 538.618 kb on + strand at 538.679 kb on + strand at 538.723 kb on + strand at 538.830 kb on - strand at 538.900 kb on + strand at 538.900 kb on + strand at 538.943 kb on - strand at 538.950 kb on + strand at 538.953 kb on + strand at 538.957 kb on - strand at 538.957 kb on - strand at 538.965 kb on - strand at 538.975 kb on - strand at 538.976 kb on + strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.992 kb on - strand at 538.993 kb on + strand at 538.993 kb on + strand at 538.993 kb on + strand at 538.993 kb on + strand at 538.993 kb on + strand at 538.993 kb on + strand at 538.993 kb on + strand at 538.994 kb on - strand at 538.995 kb on + strand at 538.995 kb on + strand at 538.995 kb on + strand at 538.998 kb on - strand at 538.999 kb on + strand at 539.001 kb on - strand at 539.001 kb on - strand at 539.025 kb on + strand at 539.028 kb on - strand at 539.028 kb on - strand at 539.055 kb on - strand at 539.059 kb on - strand at 539.059 kb on - strand at 539.059 kb on - strand at 539.059 kb on - strand at 539.059 kb on - strand at 539.060 kb on + strand at 539.060 kb on + strand at 539.060 kb on + strand at 539.108 kb on - strand at 539.116 kb on - strand at 539.116 kb on - strand at 539.118 kb on - strand at 539.118 kb on - strand at 539.118 kb on - strand at 539.118 kb on - strand at 539.119 kb on + strand at 539.119 kb on + strand at 539.139 kb on + strand at 539.140 kb on - strand at 539.141 kb on + strand at 539.210 kb on - strand at 539.210 kb on - strand at 539.211 kb on + strand at 539.211 kb on + strand at 539.221 kb on - strand at 539.226 kb on + strand at 539.226 kb on + strand at 539.226 kb on + strand at 539.229 kb on - strand at 539.230 kb on + strand at 539.230 kb on + strand at 539.230 kb on + strand at 539.233 kb on - strand at 539.234 kb on + strand at 539.243 kb on - strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.254 kb on - strand at 539.264 kb on - strand at 539.265 kb on + strand at 539.265 kb on + strand at 539.265 kb on + strand at 539.265 kb on + strand at 539.265 kb on + strand at 539.266 kb on - strand at 539.266 kb on - strand at 539.266 kb on - strand at 539.267 kb on + strand at 539.267 kb on + strand at 539.267 kb on + strand at 539.268 kb on - strand at 539.268 kb on - strand at 539.268 kb on - strand at 539.268 kb on - strand at 539.269 kb on + strand at 539.269 kb on + strand at 539.269 kb on + strand at 539.269 kb on + strand at 539.273 kb on - strand at 539.274 kb on + strand at 539.278 kb on - strand at 539.323 kb on - strand at 539.337 kb on - strand at 539.337 kb on - strand at 539.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 536,129 + MMJJ_RS02845 0.70 +2.3 536,138 - MMJJ_RS02845 0.70 +2.1 536,199 - MMJJ_RS02845 0.74 +0.9 536,290 + MMJJ_RS02845 0.80 -0.3 536,309 - MMJJ_RS02845 0.81 +5.4 536,309 - -0.7 536,310 + MMJJ_RS02845 0.81 -0.7 536,336 - MMJJ_RS02845 0.82 +0.7 536,336 - MMJJ_RS02845 0.82 +1.4 536,337 + MMJJ_RS02845 0.83 -2.2 536,355 + MMJJ_RS02845 0.84 +0.8 536,376 - MMJJ_RS02845 0.85 +1.9 536,376 - MMJJ_RS02845 0.85 -2.0 536,376 - MMJJ_RS02845 0.85 +0.9 536,376 - MMJJ_RS02845 0.85 +2.0 536,376 - MMJJ_RS02845 0.85 +0.4 536,378 - MMJJ_RS02845 0.85 -0.3 536,455 - MMJJ_RS02845 0.90 -2.2 536,456 + MMJJ_RS02845 0.90 -0.8 536,456 + MMJJ_RS02845 0.90 -0.3 536,466 - +1.7 536,467 + -1.2 536,467 + -1.9 536,469 + +2.9 536,469 + -2.2 536,469 + +1.2 536,561 - +0.2 536,562 + +0.5 536,604 + +0.9 536,646 - +0.5 536,655 - +0.7 536,655 - -2.9 536,656 + -1.7 536,656 + +0.9 536,662 - -2.5 536,669 - -0.4 536,669 - -0.1 536,672 + +1.5 536,722 - +1.4 536,722 - -0.7 536,727 + -1.0 536,747 - +3.7 536,763 - +0.2 536,764 + -1.3 536,766 + -2.0 536,775 + -2.2 536,791 - +1.3 536,791 - +2.4 536,792 + -3.2 536,792 + +1.3 536,796 - -0.7 536,803 + -0.2 536,806 + -3.4 536,806 + +3.6 536,845 - MMJJ_RS02850 0.27 -2.5 536,845 - MMJJ_RS02850 0.27 +3.0 536,845 - MMJJ_RS02850 0.27 +0.6 536,845 - MMJJ_RS02850 0.27 +0.4 536,846 + MMJJ_RS02850 0.27 -1.1 536,853 - MMJJ_RS02850 0.31 +0.6 536,853 - MMJJ_RS02850 0.31 -0.3 536,853 - MMJJ_RS02850 0.31 +0.7 536,888 + MMJJ_RS02850 0.48 -1.4 536,950 - MMJJ_RS02850 0.80 -0.4 536,951 + MMJJ_RS02850 0.80 -2.3 537,010 - +0.8 537,011 + +4.4 537,027 - -0.7 537,084 + +0.2 537,084 + +1.0 537,104 - +0.4 537,105 + +2.0 537,193 - -3.0 537,199 - +1.3 537,199 - +0.3 537,220 - -1.3 537,309 - MMJJ_RS02855 0.13 -2.4 537,314 + MMJJ_RS02855 0.13 -1.0 537,314 + MMJJ_RS02855 0.13 -1.0 537,319 - MMJJ_RS02855 0.13 -1.4 537,320 + MMJJ_RS02855 0.13 -0.6 537,331 - MMJJ_RS02855 0.14 -0.7 537,331 - MMJJ_RS02855 0.14 -2.5 537,436 - MMJJ_RS02855 0.21 +0.3 537,437 + MMJJ_RS02855 0.21 -2.3 537,560 + MMJJ_RS02855 0.28 -2.3 537,597 - MMJJ_RS02855 0.31 -2.1 537,597 - MMJJ_RS02855 0.31 -1.1 537,603 - MMJJ_RS02855 0.31 +0.9 537,603 - MMJJ_RS02855 0.31 +2.0 537,656 - MMJJ_RS02855 0.34 -0.7 537,660 - MMJJ_RS02855 0.34 -0.6 538,028 + MMJJ_RS02855 0.57 -3.0 538,059 + MMJJ_RS02855 0.59 -1.3 538,086 - MMJJ_RS02855 0.61 -3.0 538,152 - MMJJ_RS02855 0.65 -0.7 538,153 + MMJJ_RS02855 0.65 +0.3 538,267 - MMJJ_RS02855 0.72 -0.9 538,274 + MMJJ_RS02855 0.72 -1.7 538,278 + MMJJ_RS02855 0.73 -1.7 538,297 - MMJJ_RS02855 0.74 -0.7 538,366 - MMJJ_RS02855 0.78 +1.3 538,367 + MMJJ_RS02855 0.78 -0.7 538,482 - MMJJ_RS02855 0.85 -1.3 538,569 - -1.5 538,593 - -1.3 538,618 + -2.3 538,679 + -2.4 538,723 + -0.3 538,830 - -1.0 538,900 + +1.1 538,900 + +0.3 538,943 - -0.3 538,950 + -1.3 538,953 + -2.6 538,957 - +0.9 538,957 - -1.0 538,965 - -0.7 538,975 - +2.4 538,976 + -2.3 538,992 - -0.4 538,992 - +2.2 538,992 - +2.5 538,992 - -1.4 538,992 - -2.2 538,992 - +0.3 538,992 - +0.6 538,992 - -1.3 538,993 + -1.0 538,993 + +1.2 538,993 + +2.1 538,993 + +1.1 538,993 + -1.0 538,993 + +5.8 538,993 + +3.4 538,994 - -1.0 538,995 + -0.3 538,995 + -2.7 538,995 + +0.3 538,998 - +0.8 538,999 + -2.2 539,001 - +1.1 539,001 - +0.2 539,025 + -0.8 539,028 - +0.1 539,028 - +3.2 539,055 - +0.4 539,059 - -0.9 539,059 - +2.9 539,059 - +0.2 539,059 - +3.7 539,059 - -2.8 539,060 + +2.3 539,060 + -1.4 539,060 + -1.0 539,108 - -0.1 539,116 - -0.8 539,116 - -1.4 539,118 - -3.5 539,118 - +1.2 539,118 - +2.2 539,118 - +2.1 539,119 + +0.5 539,119 + -1.0 539,139 + +2.2 539,140 - -3.0 539,141 + -0.0 539,210 - -1.3 539,210 - -0.1 539,211 + +1.9 539,211 + -0.4 539,221 - -1.5 539,226 + -0.0 539,226 + +0.6 539,226 + -1.1 539,229 - -1.0 539,230 + -0.7 539,230 + -0.8 539,230 + -2.0 539,233 - +2.7 539,234 + -2.8 539,243 - +2.0 539,244 + -1.8 539,244 + +1.7 539,244 + -0.3 539,244 + -0.7 539,244 + +5.6 539,254 - -2.2 539,264 - -2.7 539,265 + +1.3 539,265 + -0.7 539,265 + -0.7 539,265 + +1.7 539,265 + +1.2 539,266 - -0.5 539,266 - -0.2 539,266 - +2.0 539,267 + +0.7 539,267 + +1.3 539,267 + +2.3 539,268 - +3.5 539,268 - -0.8 539,268 - +0.3 539,268 - +2.0 539,269 + +1.2 539,269 + +3.1 539,269 + -0.8 539,269 + -1.1 539,273 - -0.2 539,274 + +0.9 539,278 - -2.1 539,323 - +2.5 539,337 - +2.5 539,337 - -0.1 539,367 - -0.4
Or see this region's nucleotide sequence