Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02850

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02845 and MMJJ_RS02850 are separated by 167 nucleotidesMMJJ_RS02850 and MMJJ_RS02855 are separated by 113 nucleotides MMJJ_RS02845: MMJJ_RS02845 - hypothetical protein, at 534,978 to 536,624 _RS02845 MMJJ_RS02850: MMJJ_RS02850 - hypothetical protein, at 536,792 to 536,989 _RS02850 MMJJ_RS02855: MMJJ_RS02855 - DEAD/DEAH box helicase, at 537,103 to 538,719 _RS02855 Position (kb) 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 535.796 kb on - strand, within MMJJ_RS02845at 535.899 kb on - strand, within MMJJ_RS02845at 535.947 kb on - strand, within MMJJ_RS02845at 535.948 kb on + strand, within MMJJ_RS02845at 536.020 kb on + strand, within MMJJ_RS02845at 536.074 kb on - strand, within MMJJ_RS02845at 536.129 kb on + strand, within MMJJ_RS02845at 536.138 kb on - strand, within MMJJ_RS02845at 536.199 kb on - strand, within MMJJ_RS02845at 536.290 kb on + strand, within MMJJ_RS02845at 536.309 kb on - strand, within MMJJ_RS02845at 536.309 kb on - strandat 536.310 kb on + strand, within MMJJ_RS02845at 536.336 kb on - strand, within MMJJ_RS02845at 536.336 kb on - strand, within MMJJ_RS02845at 536.337 kb on + strand, within MMJJ_RS02845at 536.355 kb on + strand, within MMJJ_RS02845at 536.376 kb on - strand, within MMJJ_RS02845at 536.376 kb on - strand, within MMJJ_RS02845at 536.376 kb on - strand, within MMJJ_RS02845at 536.376 kb on - strand, within MMJJ_RS02845at 536.376 kb on - strand, within MMJJ_RS02845at 536.378 kb on - strand, within MMJJ_RS02845at 536.455 kb on - strand, within MMJJ_RS02845at 536.456 kb on + strand, within MMJJ_RS02845at 536.456 kb on + strand, within MMJJ_RS02845at 536.466 kb on - strandat 536.467 kb on + strandat 536.467 kb on + strandat 536.469 kb on + strandat 536.469 kb on + strandat 536.469 kb on + strandat 536.561 kb on - strandat 536.562 kb on + strandat 536.604 kb on + strandat 536.646 kb on - strandat 536.655 kb on - strandat 536.655 kb on - strandat 536.656 kb on + strandat 536.656 kb on + strandat 536.662 kb on - strandat 536.669 kb on - strandat 536.669 kb on - strandat 536.672 kb on + strandat 536.722 kb on - strandat 536.722 kb on - strandat 536.727 kb on + strandat 536.747 kb on - strandat 536.763 kb on - strandat 536.764 kb on + strandat 536.766 kb on + strandat 536.775 kb on + strandat 536.791 kb on - strandat 536.791 kb on - strandat 536.792 kb on + strandat 536.792 kb on + strandat 536.796 kb on - strandat 536.803 kb on + strandat 536.806 kb on + strandat 536.806 kb on + strandat 536.845 kb on - strand, within MMJJ_RS02850at 536.845 kb on - strand, within MMJJ_RS02850at 536.845 kb on - strand, within MMJJ_RS02850at 536.845 kb on - strand, within MMJJ_RS02850at 536.846 kb on + strand, within MMJJ_RS02850at 536.853 kb on - strand, within MMJJ_RS02850at 536.853 kb on - strand, within MMJJ_RS02850at 536.853 kb on - strand, within MMJJ_RS02850at 536.888 kb on + strand, within MMJJ_RS02850at 536.950 kb on - strand, within MMJJ_RS02850at 536.951 kb on + strand, within MMJJ_RS02850at 537.010 kb on - strandat 537.011 kb on + strandat 537.027 kb on - strandat 537.084 kb on + strandat 537.084 kb on + strandat 537.104 kb on - strandat 537.105 kb on + strandat 537.193 kb on - strandat 537.199 kb on - strandat 537.199 kb on - strandat 537.220 kb on - strandat 537.309 kb on - strand, within MMJJ_RS02855at 537.314 kb on + strand, within MMJJ_RS02855at 537.314 kb on + strand, within MMJJ_RS02855at 537.319 kb on - strand, within MMJJ_RS02855at 537.320 kb on + strand, within MMJJ_RS02855at 537.331 kb on - strand, within MMJJ_RS02855at 537.331 kb on - strand, within MMJJ_RS02855at 537.436 kb on - strand, within MMJJ_RS02855at 537.437 kb on + strand, within MMJJ_RS02855at 537.560 kb on + strand, within MMJJ_RS02855at 537.597 kb on - strand, within MMJJ_RS02855at 537.597 kb on - strand, within MMJJ_RS02855at 537.603 kb on - strand, within MMJJ_RS02855at 537.603 kb on - strand, within MMJJ_RS02855at 537.656 kb on - strand, within MMJJ_RS02855at 537.660 kb on - strand, within MMJJ_RS02855

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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535,796 - MMJJ_RS02845 0.50 +2.8
535,899 - MMJJ_RS02845 0.56 +1.3
535,947 - MMJJ_RS02845 0.59 -1.0
535,948 + MMJJ_RS02845 0.59 -2.4
536,020 + MMJJ_RS02845 0.63 +1.2
536,074 - MMJJ_RS02845 0.67 +0.8
536,129 + MMJJ_RS02845 0.70 +2.3
536,138 - MMJJ_RS02845 0.70 +2.1
536,199 - MMJJ_RS02845 0.74 +0.9
536,290 + MMJJ_RS02845 0.80 -0.3
536,309 - MMJJ_RS02845 0.81 +5.4
536,309 - -0.7
536,310 + MMJJ_RS02845 0.81 -0.7
536,336 - MMJJ_RS02845 0.82 +0.7
536,336 - MMJJ_RS02845 0.82 +1.4
536,337 + MMJJ_RS02845 0.83 -2.2
536,355 + MMJJ_RS02845 0.84 +0.8
536,376 - MMJJ_RS02845 0.85 +1.9
536,376 - MMJJ_RS02845 0.85 -2.0
536,376 - MMJJ_RS02845 0.85 +0.9
536,376 - MMJJ_RS02845 0.85 +2.0
536,376 - MMJJ_RS02845 0.85 +0.4
536,378 - MMJJ_RS02845 0.85 -0.3
536,455 - MMJJ_RS02845 0.90 -2.2
536,456 + MMJJ_RS02845 0.90 -0.8
536,456 + MMJJ_RS02845 0.90 -0.3
536,466 - +1.7
536,467 + -1.2
536,467 + -1.9
536,469 + +2.9
536,469 + -2.2
536,469 + +1.2
536,561 - +0.2
536,562 + +0.5
536,604 + +0.9
536,646 - +0.5
536,655 - +0.7
536,655 - -2.9
536,656 + -1.7
536,656 + +0.9
536,662 - -2.5
536,669 - -0.4
536,669 - -0.1
536,672 + +1.5
536,722 - +1.4
536,722 - -0.7
536,727 + -1.0
536,747 - +3.7
536,763 - +0.2
536,764 + -1.3
536,766 + -2.0
536,775 + -2.2
536,791 - +1.3
536,791 - +2.4
536,792 + -3.2
536,792 + +1.3
536,796 - -0.7
536,803 + -0.2
536,806 + -3.4
536,806 + +3.6
536,845 - MMJJ_RS02850 0.27 -2.5
536,845 - MMJJ_RS02850 0.27 +3.0
536,845 - MMJJ_RS02850 0.27 +0.6
536,845 - MMJJ_RS02850 0.27 +0.4
536,846 + MMJJ_RS02850 0.27 -1.1
536,853 - MMJJ_RS02850 0.31 +0.6
536,853 - MMJJ_RS02850 0.31 -0.3
536,853 - MMJJ_RS02850 0.31 +0.7
536,888 + MMJJ_RS02850 0.48 -1.4
536,950 - MMJJ_RS02850 0.80 -0.4
536,951 + MMJJ_RS02850 0.80 -2.3
537,010 - +0.8
537,011 + +4.4
537,027 - -0.7
537,084 + +0.2
537,084 + +1.0
537,104 - +0.4
537,105 + +2.0
537,193 - -3.0
537,199 - +1.3
537,199 - +0.3
537,220 - -1.3
537,309 - MMJJ_RS02855 0.13 -2.4
537,314 + MMJJ_RS02855 0.13 -1.0
537,314 + MMJJ_RS02855 0.13 -1.0
537,319 - MMJJ_RS02855 0.13 -1.4
537,320 + MMJJ_RS02855 0.13 -0.6
537,331 - MMJJ_RS02855 0.14 -0.7
537,331 - MMJJ_RS02855 0.14 -2.5
537,436 - MMJJ_RS02855 0.21 +0.3
537,437 + MMJJ_RS02855 0.21 -2.3
537,560 + MMJJ_RS02855 0.28 -2.3
537,597 - MMJJ_RS02855 0.31 -2.1
537,597 - MMJJ_RS02855 0.31 -1.1
537,603 - MMJJ_RS02855 0.31 +0.9
537,603 - MMJJ_RS02855 0.31 +2.0
537,656 - MMJJ_RS02855 0.34 -0.7
537,660 - MMJJ_RS02855 0.34 -0.6

Or see this region's nucleotide sequence