Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02335 and MMJJ_RS02340 are separated by 266 nucleotides MMJJ_RS02340 and MMJJ_RS02345 are separated by 349 nucleotides
MMJJ_RS02335: MMJJ_RS02335 - ABC transporter substrate-binding protein, at 441,052 to 442,323
_RS02335
MMJJ_RS02340: MMJJ_RS02340 - SAM-dependent methyltransferase, at 442,590 to 443,138
_RS02340
MMJJ_RS02345: MMJJ_RS02345 - ATP-binding protein, at 443,488 to 444,759
_RS02345
Position (kb) 442
443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 441.611 kb on - strand, within MMJJ_RS02335 at 441.616 kb on - strand, within MMJJ_RS02335 at 441.621 kb on - strand, within MMJJ_RS02335 at 441.656 kb on - strand, within MMJJ_RS02335 at 441.656 kb on - strand, within MMJJ_RS02335 at 441.690 kb on - strand, within MMJJ_RS02335 at 441.713 kb on - strand, within MMJJ_RS02335 at 441.713 kb on - strand at 441.714 kb on + strand, within MMJJ_RS02335 at 441.714 kb on + strand, within MMJJ_RS02335 at 441.714 kb on + strand, within MMJJ_RS02335 at 441.714 kb on + strand, within MMJJ_RS02335 at 441.719 kb on - strand, within MMJJ_RS02335 at 441.731 kb on + strand, within MMJJ_RS02335 at 441.732 kb on - strand, within MMJJ_RS02335 at 441.736 kb on - strand, within MMJJ_RS02335 at 441.736 kb on - strand, within MMJJ_RS02335 at 441.737 kb on + strand, within MMJJ_RS02335 at 441.737 kb on + strand, within MMJJ_RS02335 at 441.751 kb on - strand, within MMJJ_RS02335 at 441.751 kb on - strand, within MMJJ_RS02335 at 441.847 kb on + strand, within MMJJ_RS02335 at 441.860 kb on - strand, within MMJJ_RS02335 at 441.860 kb on - strand, within MMJJ_RS02335 at 441.877 kb on + strand, within MMJJ_RS02335 at 441.889 kb on - strand, within MMJJ_RS02335 at 441.902 kb on - strand, within MMJJ_RS02335 at 441.902 kb on - strand, within MMJJ_RS02335 at 441.902 kb on - strand, within MMJJ_RS02335 at 441.903 kb on + strand, within MMJJ_RS02335 at 441.903 kb on + strand, within MMJJ_RS02335 at 441.903 kb on + strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.904 kb on - strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.905 kb on + strand, within MMJJ_RS02335 at 441.910 kb on + strand, within MMJJ_RS02335 at 441.910 kb on + strand, within MMJJ_RS02335 at 441.917 kb on - strand, within MMJJ_RS02335 at 441.933 kb on + strand, within MMJJ_RS02335 at 441.937 kb on - strand, within MMJJ_RS02335 at 441.937 kb on - strand, within MMJJ_RS02335 at 441.938 kb on + strand, within MMJJ_RS02335 at 441.938 kb on + strand, within MMJJ_RS02335 at 441.940 kb on - strand, within MMJJ_RS02335 at 441.941 kb on + strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.961 kb on - strand, within MMJJ_RS02335 at 441.962 kb on + strand, within MMJJ_RS02335 at 441.962 kb on + strand, within MMJJ_RS02335 at 441.963 kb on - strand, within MMJJ_RS02335 at 441.964 kb on + strand, within MMJJ_RS02335 at 441.964 kb on + strand, within MMJJ_RS02335 at 441.999 kb on - strand, within MMJJ_RS02335 at 442.006 kb on + strand, within MMJJ_RS02335 at 442.033 kb on + strand, within MMJJ_RS02335 at 442.036 kb on + strand, within MMJJ_RS02335 at 442.083 kb on - strand, within MMJJ_RS02335 at 442.084 kb on + strand, within MMJJ_RS02335 at 442.084 kb on + strand, within MMJJ_RS02335 at 442.087 kb on - strand, within MMJJ_RS02335 at 442.087 kb on - strand, within MMJJ_RS02335 at 442.088 kb on + strand, within MMJJ_RS02335 at 442.090 kb on + strand, within MMJJ_RS02335 at 442.113 kb on + strand, within MMJJ_RS02335 at 442.120 kb on + strand, within MMJJ_RS02335 at 442.131 kb on + strand, within MMJJ_RS02335 at 442.184 kb on - strand, within MMJJ_RS02335 at 442.186 kb on - strand, within MMJJ_RS02335 at 442.186 kb on - strand, within MMJJ_RS02335 at 442.204 kb on - strand at 442.205 kb on + strand at 442.205 kb on + strand at 442.211 kb on - strand at 442.212 kb on + strand at 442.237 kb on - strand at 442.237 kb on - strand at 442.237 kb on - strand at 442.237 kb on - strand at 442.275 kb on + strand at 442.293 kb on - strand at 442.293 kb on - strand at 442.293 kb on - strand at 442.293 kb on - strand at 442.294 kb on + strand at 442.294 kb on + strand at 442.294 kb on + strand at 442.294 kb on + strand at 442.298 kb on - strand at 442.299 kb on + strand at 442.303 kb on - strand at 442.303 kb on - strand at 442.304 kb on + strand at 442.304 kb on + strand at 442.304 kb on + strand at 442.322 kb on + strand at 442.334 kb on + strand at 442.337 kb on + strand at 442.337 kb on + strand at 442.339 kb on + strand at 442.348 kb on - strand at 442.349 kb on + strand at 442.368 kb on + strand at 442.373 kb on - strand at 442.418 kb on - strand at 442.418 kb on - strand at 442.419 kb on + strand at 442.419 kb on + strand at 442.423 kb on + strand at 442.470 kb on + strand at 442.478 kb on - strand at 442.479 kb on + strand at 442.479 kb on + strand at 442.532 kb on + strand at 442.536 kb on + strand at 442.536 kb on + strand at 442.546 kb on + strand at 442.592 kb on + strand at 442.614 kb on - strand at 442.619 kb on - strand at 442.620 kb on + strand at 442.670 kb on + strand, within MMJJ_RS02340 at 442.670 kb on + strand, within MMJJ_RS02340 at 442.740 kb on - strand, within MMJJ_RS02340 at 442.740 kb on - strand, within MMJJ_RS02340 at 442.740 kb on - strand, within MMJJ_RS02340 at 442.740 kb on - strand at 442.740 kb on - strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.741 kb on + strand, within MMJJ_RS02340 at 442.765 kb on + strand, within MMJJ_RS02340 at 442.765 kb on + strand, within MMJJ_RS02340 at 442.906 kb on - strand, within MMJJ_RS02340 at 442.906 kb on - strand, within MMJJ_RS02340 at 442.906 kb on - strand, within MMJJ_RS02340 at 442.907 kb on + strand, within MMJJ_RS02340 at 443.078 kb on - strand, within MMJJ_RS02340 at 443.079 kb on + strand, within MMJJ_RS02340 at 443.082 kb on + strand, within MMJJ_RS02340 at 443.082 kb on + strand, within MMJJ_RS02340 at 443.214 kb on + strand at 443.218 kb on - strand at 443.236 kb on - strand at 443.236 kb on - strand at 443.237 kb on + strand at 443.238 kb on - strand at 443.238 kb on - strand at 443.239 kb on + strand at 443.240 kb on - strand at 443.240 kb on - strand at 443.288 kb on + strand at 443.301 kb on + strand at 443.337 kb on - strand at 443.350 kb on - strand at 443.354 kb on - strand at 443.355 kb on + strand at 443.384 kb on - strand at 443.384 kb on - strand at 443.394 kb on + strand at 443.398 kb on - strand at 443.402 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.463 kb on - strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.464 kb on + strand at 443.465 kb on - strand at 443.465 kb on - strand at 443.465 kb on - strand at 443.465 kb on - strand at 443.466 kb on + strand at 443.466 kb on + strand at 443.467 kb on - strand at 443.467 kb on - strand at 443.468 kb on + strand at 443.468 kb on + strand at 443.468 kb on + strand at 443.472 kb on + strand at 443.490 kb on + strand at 443.494 kb on + strand at 443.537 kb on + strand at 443.538 kb on - strand at 443.539 kb on + strand at 443.564 kb on + strand at 443.583 kb on + strand at 443.584 kb on - strand at 443.585 kb on + strand at 443.742 kb on + strand, within MMJJ_RS02345 at 443.807 kb on - strand, within MMJJ_RS02345 at 443.807 kb on - strand, within MMJJ_RS02345 at 443.808 kb on + strand, within MMJJ_RS02345 at 444.001 kb on + strand, within MMJJ_RS02345 at 444.001 kb on + strand, within MMJJ_RS02345 at 444.007 kb on + strand, within MMJJ_RS02345 at 444.030 kb on - strand, within MMJJ_RS02345 at 444.059 kb on + strand, within MMJJ_RS02345 at 444.059 kb on + strand, within MMJJ_RS02345 at 444.073 kb on - strand, within MMJJ_RS02345 at 444.104 kb on - strand, within MMJJ_RS02345 at 444.105 kb on + strand, within MMJJ_RS02345 at 444.123 kb on - strand, within MMJJ_RS02345 at 444.125 kb on - strand, within MMJJ_RS02345 at 444.126 kb on + strand, within MMJJ_RS02345 at 444.135 kb on - strand, within MMJJ_RS02345
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 441,611 - MMJJ_RS02335 0.44 +1.2 441,616 - MMJJ_RS02335 0.44 -1.5 441,621 - MMJJ_RS02335 0.45 -3.6 441,656 - MMJJ_RS02335 0.47 +0.3 441,656 - MMJJ_RS02335 0.47 -1.0 441,690 - MMJJ_RS02335 0.50 -2.7 441,713 - MMJJ_RS02335 0.52 -0.4 441,713 - +0.3 441,714 + MMJJ_RS02335 0.52 +2.0 441,714 + MMJJ_RS02335 0.52 +2.3 441,714 + MMJJ_RS02335 0.52 +1.0 441,714 + MMJJ_RS02335 0.52 +1.6 441,719 - MMJJ_RS02335 0.52 -2.4 441,731 + MMJJ_RS02335 0.53 +1.3 441,732 - MMJJ_RS02335 0.53 -0.7 441,736 - MMJJ_RS02335 0.54 -2.6 441,736 - MMJJ_RS02335 0.54 -3.2 441,737 + MMJJ_RS02335 0.54 +1.4 441,737 + MMJJ_RS02335 0.54 -2.9 441,751 - MMJJ_RS02335 0.55 -1.2 441,751 - MMJJ_RS02335 0.55 +0.6 441,847 + MMJJ_RS02335 0.62 +2.2 441,860 - MMJJ_RS02335 0.64 -0.9 441,860 - MMJJ_RS02335 0.64 +1.3 441,877 + MMJJ_RS02335 0.65 +1.8 441,889 - MMJJ_RS02335 0.66 +0.1 441,902 - MMJJ_RS02335 0.67 +1.6 441,902 - MMJJ_RS02335 0.67 +0.8 441,902 - MMJJ_RS02335 0.67 -0.1 441,903 + MMJJ_RS02335 0.67 +1.3 441,903 + MMJJ_RS02335 0.67 +2.7 441,903 + MMJJ_RS02335 0.67 +1.4 441,904 - MMJJ_RS02335 0.67 +1.7 441,904 - MMJJ_RS02335 0.67 -0.5 441,904 - MMJJ_RS02335 0.67 -2.0 441,904 - MMJJ_RS02335 0.67 -2.5 441,904 - MMJJ_RS02335 0.67 +1.0 441,905 + MMJJ_RS02335 0.67 +1.7 441,905 + MMJJ_RS02335 0.67 +3.1 441,905 + MMJJ_RS02335 0.67 +0.7 441,905 + MMJJ_RS02335 0.67 +1.7 441,905 + MMJJ_RS02335 0.67 -0.3 441,905 + MMJJ_RS02335 0.67 -3.7 441,905 + MMJJ_RS02335 0.67 -1.0 441,905 + MMJJ_RS02335 0.67 -0.3 441,905 + MMJJ_RS02335 0.67 -1.7 441,910 + MMJJ_RS02335 0.67 +1.0 441,910 + MMJJ_RS02335 0.67 -1.8 441,917 - MMJJ_RS02335 0.68 +0.5 441,933 + MMJJ_RS02335 0.69 +1.3 441,937 - MMJJ_RS02335 0.70 +0.0 441,937 - MMJJ_RS02335 0.70 +0.7 441,938 + MMJJ_RS02335 0.70 +0.5 441,938 + MMJJ_RS02335 0.70 +1.0 441,940 - MMJJ_RS02335 0.70 -2.0 441,941 + MMJJ_RS02335 0.70 -3.0 441,961 - MMJJ_RS02335 0.71 +0.9 441,961 - MMJJ_RS02335 0.71 -3.5 441,961 - MMJJ_RS02335 0.71 +0.7 441,961 - MMJJ_RS02335 0.71 -0.1 441,962 + MMJJ_RS02335 0.72 -2.0 441,962 + MMJJ_RS02335 0.72 -1.5 441,963 - MMJJ_RS02335 0.72 -2.8 441,964 + MMJJ_RS02335 0.72 +5.3 441,964 + MMJJ_RS02335 0.72 +0.1 441,999 - MMJJ_RS02335 0.74 +1.8 442,006 + MMJJ_RS02335 0.75 -2.2 442,033 + MMJJ_RS02335 0.77 -0.7 442,036 + MMJJ_RS02335 0.77 +0.1 442,083 - MMJJ_RS02335 0.81 -2.7 442,084 + MMJJ_RS02335 0.81 -0.2 442,084 + MMJJ_RS02335 0.81 +0.2 442,087 - MMJJ_RS02335 0.81 +0.6 442,087 - MMJJ_RS02335 0.81 -1.0 442,088 + MMJJ_RS02335 0.81 +0.4 442,090 + MMJJ_RS02335 0.82 -1.5 442,113 + MMJJ_RS02335 0.83 -0.7 442,120 + MMJJ_RS02335 0.84 -2.2 442,131 + MMJJ_RS02335 0.85 -1.0 442,184 - MMJJ_RS02335 0.89 +1.3 442,186 - MMJJ_RS02335 0.89 -2.1 442,186 - MMJJ_RS02335 0.89 -0.9 442,204 - -0.7 442,205 + +0.4 442,205 + -0.1 442,211 - +0.9 442,212 + +1.7 442,237 - +3.3 442,237 - -1.9 442,237 - +2.2 442,237 - +0.2 442,275 + -0.7 442,293 - +0.8 442,293 - +0.5 442,293 - +2.6 442,293 - -1.9 442,294 + -1.9 442,294 + -0.6 442,294 + -2.1 442,294 + +2.1 442,298 - -1.0 442,299 + +1.3 442,303 - -2.5 442,303 - +2.9 442,304 + +0.3 442,304 + +0.8 442,304 + +1.3 442,322 + +0.5 442,334 + +0.3 442,337 + -1.7 442,337 + -0.0 442,339 + +0.2 442,348 - +1.3 442,349 + -0.3 442,368 + -2.2 442,373 - +1.1 442,418 - +2.6 442,418 - -2.2 442,419 + -0.8 442,419 + +1.0 442,423 + +1.5 442,470 + +1.5 442,478 - -0.7 442,479 + +3.6 442,479 + +1.9 442,532 + -1.0 442,536 + -1.7 442,536 + -2.4 442,546 + +2.8 442,592 + +4.5 442,614 - +0.6 442,619 - -1.0 442,620 + +1.7 442,670 + MMJJ_RS02340 0.15 -1.2 442,670 + MMJJ_RS02340 0.15 -0.1 442,740 - MMJJ_RS02340 0.27 +1.2 442,740 - MMJJ_RS02340 0.27 -0.3 442,740 - MMJJ_RS02340 0.27 +0.1 442,740 - +0.3 442,740 - MMJJ_RS02340 0.27 -2.3 442,741 + MMJJ_RS02340 0.28 +4.6 442,741 + MMJJ_RS02340 0.28 +3.1 442,741 + MMJJ_RS02340 0.28 +0.4 442,741 + MMJJ_RS02340 0.28 +1.6 442,741 + MMJJ_RS02340 0.28 -0.5 442,741 + MMJJ_RS02340 0.28 +1.0 442,741 + MMJJ_RS02340 0.28 +1.3 442,741 + MMJJ_RS02340 0.28 -1.7 442,765 + MMJJ_RS02340 0.32 +1.9 442,765 + MMJJ_RS02340 0.32 +0.9 442,906 - MMJJ_RS02340 0.58 +3.2 442,906 - MMJJ_RS02340 0.58 +0.8 442,906 - MMJJ_RS02340 0.58 +2.7 442,907 + MMJJ_RS02340 0.58 +2.3 443,078 - MMJJ_RS02340 0.89 -0.5 443,079 + MMJJ_RS02340 0.89 +2.4 443,082 + MMJJ_RS02340 0.90 +1.3 443,082 + MMJJ_RS02340 0.90 -3.2 443,214 + +1.6 443,218 - +3.2 443,236 - -0.3 443,236 - +1.4 443,237 + +1.8 443,238 - -0.6 443,238 - +1.7 443,239 + -2.4 443,240 - -2.4 443,240 - -0.7 443,288 + +1.0 443,301 + +1.1 443,337 - -1.3 443,350 - -2.1 443,354 - -2.2 443,355 + -1.3 443,384 - +0.8 443,384 - -1.7 443,394 + +2.3 443,398 - +1.3 443,402 - -1.4 443,463 - -0.5 443,463 - +3.5 443,463 - +0.5 443,463 - -3.1 443,463 - +1.8 443,464 + +0.2 443,464 + +1.0 443,464 + -3.6 443,464 + +0.3 443,464 + -0.7 443,464 + -1.8 443,465 - -0.7 443,465 - +0.5 443,465 - +1.0 443,465 - +0.9 443,466 + +3.0 443,466 + +1.0 443,467 - +0.7 443,467 - +0.2 443,468 + -0.4 443,468 + -1.5 443,468 + -0.8 443,472 + -2.4 443,490 + +0.3 443,494 + -1.6 443,537 + +0.8 443,538 - -1.7 443,539 + -4.1 443,564 + -2.4 443,583 + -1.0 443,584 - -0.1 443,585 + -0.6 443,742 + MMJJ_RS02345 0.20 -2.2 443,807 - MMJJ_RS02345 0.25 -1.2 443,807 - MMJJ_RS02345 0.25 -0.2 443,808 + MMJJ_RS02345 0.25 +0.5 444,001 + MMJJ_RS02345 0.40 +2.1 444,001 + MMJJ_RS02345 0.40 -1.7 444,007 + MMJJ_RS02345 0.41 -0.7 444,030 - MMJJ_RS02345 0.43 -2.1 444,059 + MMJJ_RS02345 0.45 -2.2 444,059 + MMJJ_RS02345 0.45 -0.1 444,073 - MMJJ_RS02345 0.46 -2.6 444,104 - MMJJ_RS02345 0.48 +1.0 444,105 + MMJJ_RS02345 0.49 +2.6 444,123 - MMJJ_RS02345 0.50 -1.6 444,125 - MMJJ_RS02345 0.50 +1.8 444,126 + MMJJ_RS02345 0.50 -2.7 444,135 - MMJJ_RS02345 0.51 -1.2
Or see this region's nucleotide sequence