Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02270 and MMJJ_RS02275 overlap by 14 nucleotides MMJJ_RS02275 and MMJJ_RS02280 are separated by 231 nucleotides MMJJ_RS02280 and MMJJ_RS02285 are separated by 423 nucleotides MMJJ_RS02285 and MMJJ_RS02290 are separated by 1 nucleotides
MMJJ_RS02270: MMJJ_RS02270 - HEPN domain-containing protein, at 429,486 to 429,995
_RS02270
MMJJ_RS02275: MMJJ_RS02275 - nucleotidyltransferase domain-containing protein, at 429,982 to 430,599
_RS02275
MMJJ_RS02280: MMJJ_RS02280 - sulfate permease, at 430,831 to 432,489
_RS02280
MMJJ_RS02285: MMJJ_RS02285 - class III signal peptide-containing protein, at 432,913 to 433,134
_RS02285
MMJJ_RS02290: MMJJ_RS02290 - MarR family transcriptional regulator, at 433,136 to 433,762
_RS02290
Position (kb) 430
431
432
433 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 429.843 kb on - strand, within MMJJ_RS02270 at 429.858 kb on + strand, within MMJJ_RS02270 at 429.943 kb on - strand, within MMJJ_RS02270 at 429.976 kb on - strand at 430.109 kb on + strand, within MMJJ_RS02275 at 430.111 kb on + strand, within MMJJ_RS02275 at 430.111 kb on + strand, within MMJJ_RS02275 at 430.111 kb on + strand, within MMJJ_RS02275 at 430.114 kb on - strand, within MMJJ_RS02275 at 430.350 kb on - strand, within MMJJ_RS02275 at 430.350 kb on - strand, within MMJJ_RS02275 at 430.424 kb on - strand, within MMJJ_RS02275 at 430.447 kb on - strand, within MMJJ_RS02275 at 430.536 kb on - strand, within MMJJ_RS02275 at 430.566 kb on + strand at 430.568 kb on - strand at 430.569 kb on + strand at 430.579 kb on - strand at 430.613 kb on + strand at 430.619 kb on + strand at 430.622 kb on - strand at 430.622 kb on - strand at 430.622 kb on - strand at 430.623 kb on + strand at 430.623 kb on + strand at 430.624 kb on - strand at 430.680 kb on - strand at 430.680 kb on - strand at 430.693 kb on - strand at 430.693 kb on - strand at 430.693 kb on - strand at 430.694 kb on + strand at 430.698 kb on + strand at 430.699 kb on - strand at 430.700 kb on + strand at 430.700 kb on + strand at 430.700 kb on + strand at 430.700 kb on + strand at 430.705 kb on + strand at 430.710 kb on + strand at 430.722 kb on + strand at 430.736 kb on + strand at 430.739 kb on - strand at 430.740 kb on + strand at 430.740 kb on + strand at 430.740 kb on + strand at 430.741 kb on - strand at 430.741 kb on - strand at 430.742 kb on + strand at 430.743 kb on - strand at 430.744 kb on + strand at 430.762 kb on - strand at 430.764 kb on - strand at 430.765 kb on + strand at 430.765 kb on + strand at 430.787 kb on + strand at 430.790 kb on - strand at 430.796 kb on + strand at 430.796 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.828 kb on - strand at 430.829 kb on + strand at 430.829 kb on + strand at 430.846 kb on + strand at 430.878 kb on + strand at 430.901 kb on - strand at 430.902 kb on + strand at 430.964 kb on - strand at 430.992 kb on + strand at 430.992 kb on + strand at 431.073 kb on - strand, within MMJJ_RS02280 at 431.074 kb on + strand, within MMJJ_RS02280 at 431.126 kb on - strand, within MMJJ_RS02280 at 431.160 kb on - strand, within MMJJ_RS02280 at 431.196 kb on - strand, within MMJJ_RS02280 at 431.197 kb on + strand, within MMJJ_RS02280 at 431.217 kb on + strand, within MMJJ_RS02280 at 431.295 kb on - strand, within MMJJ_RS02280 at 431.295 kb on - strand, within MMJJ_RS02280 at 431.299 kb on - strand, within MMJJ_RS02280 at 431.300 kb on + strand, within MMJJ_RS02280 at 431.300 kb on + strand, within MMJJ_RS02280 at 431.300 kb on + strand, within MMJJ_RS02280 at 431.300 kb on + strand, within MMJJ_RS02280 at 431.310 kb on - strand, within MMJJ_RS02280 at 431.321 kb on - strand, within MMJJ_RS02280 at 431.321 kb on - strand, within MMJJ_RS02280 at 431.321 kb on - strand, within MMJJ_RS02280 at 431.322 kb on + strand, within MMJJ_RS02280 at 431.358 kb on + strand, within MMJJ_RS02280 at 431.362 kb on + strand, within MMJJ_RS02280 at 431.408 kb on - strand, within MMJJ_RS02280 at 431.417 kb on - strand, within MMJJ_RS02280 at 431.442 kb on - strand, within MMJJ_RS02280 at 431.443 kb on + strand, within MMJJ_RS02280 at 431.443 kb on + strand at 431.443 kb on + strand, within MMJJ_RS02280 at 431.454 kb on + strand, within MMJJ_RS02280 at 431.476 kb on + strand, within MMJJ_RS02280 at 431.568 kb on - strand, within MMJJ_RS02280 at 431.588 kb on - strand, within MMJJ_RS02280 at 431.634 kb on - strand, within MMJJ_RS02280 at 431.635 kb on + strand, within MMJJ_RS02280 at 431.679 kb on - strand, within MMJJ_RS02280 at 431.679 kb on - strand, within MMJJ_RS02280 at 431.680 kb on + strand, within MMJJ_RS02280 at 431.862 kb on + strand, within MMJJ_RS02280 at 431.868 kb on + strand, within MMJJ_RS02280 at 431.905 kb on + strand, within MMJJ_RS02280 at 431.919 kb on - strand, within MMJJ_RS02280 at 431.919 kb on - strand, within MMJJ_RS02280 at 431.920 kb on + strand, within MMJJ_RS02280 at 431.996 kb on - strand, within MMJJ_RS02280 at 432.026 kb on - strand, within MMJJ_RS02280 at 432.105 kb on + strand, within MMJJ_RS02280 at 432.190 kb on + strand, within MMJJ_RS02280 at 432.254 kb on - strand, within MMJJ_RS02280 at 432.254 kb on - strand, within MMJJ_RS02280 at 432.315 kb on - strand, within MMJJ_RS02280 at 432.315 kb on - strand, within MMJJ_RS02280 at 432.316 kb on + strand, within MMJJ_RS02280 at 432.328 kb on + strand at 432.350 kb on - strand at 432.378 kb on - strand at 432.378 kb on - strand at 432.402 kb on - strand at 432.423 kb on + strand at 432.446 kb on - strand at 432.447 kb on + strand at 432.450 kb on + strand at 432.455 kb on - strand at 432.456 kb on + strand at 432.477 kb on + strand at 432.562 kb on - strand at 432.617 kb on + strand at 432.621 kb on + strand at 432.657 kb on - strand at 432.706 kb on - strand at 432.706 kb on - strand at 432.707 kb on + strand at 432.710 kb on - strand at 432.756 kb on - strand at 432.757 kb on + strand at 432.811 kb on - strand at 432.812 kb on + strand at 432.817 kb on - strand at 432.817 kb on - strand at 432.818 kb on + strand at 432.818 kb on + strand at 432.818 kb on + strand at 432.838 kb on - strand at 432.839 kb on + strand at 432.839 kb on + strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.862 kb on - strand at 432.868 kb on - strand at 432.869 kb on + strand at 432.869 kb on + strand at 432.869 kb on + strand at 432.869 kb on + strand at 432.873 kb on + strand at 432.873 kb on + strand at 432.887 kb on + strand at 432.895 kb on - strand at 432.912 kb on - strand at 432.913 kb on + strand at 433.019 kb on - strand, within MMJJ_RS02285 at 433.019 kb on - strand, within MMJJ_RS02285 at 433.020 kb on + strand, within MMJJ_RS02285 at 433.027 kb on + strand, within MMJJ_RS02285 at 433.082 kb on - strand, within MMJJ_RS02285 at 433.083 kb on + strand, within MMJJ_RS02285 at 433.121 kb on - strand at 433.121 kb on - strand at 433.125 kb on - strand at 433.126 kb on + strand at 433.126 kb on + strand at 433.133 kb on + strand at 433.138 kb on + strand at 433.139 kb on - strand at 433.162 kb on - strand at 433.163 kb on + strand at 433.166 kb on - strand at 433.180 kb on + strand at 433.185 kb on + strand at 433.199 kb on + strand, within MMJJ_RS02290 at 433.206 kb on + strand, within MMJJ_RS02290 at 433.215 kb on + strand, within MMJJ_RS02290 at 433.295 kb on - strand, within MMJJ_RS02290 at 433.296 kb on + strand, within MMJJ_RS02290 at 433.302 kb on + strand, within MMJJ_RS02290 at 433.352 kb on - strand, within MMJJ_RS02290 at 433.472 kb on + strand, within MMJJ_RS02290 at 433.472 kb on + strand, within MMJJ_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 429,843 - MMJJ_RS02270 0.70 -1.0 429,858 + MMJJ_RS02270 0.73 +0.2 429,943 - MMJJ_RS02270 0.90 -0.3 429,976 - -2.4 430,109 + MMJJ_RS02275 0.21 -0.1 430,111 + MMJJ_RS02275 0.21 -1.3 430,111 + MMJJ_RS02275 0.21 -1.9 430,111 + MMJJ_RS02275 0.21 -1.3 430,114 - MMJJ_RS02275 0.21 +1.3 430,350 - MMJJ_RS02275 0.60 +1.3 430,350 - MMJJ_RS02275 0.60 -0.7 430,424 - MMJJ_RS02275 0.72 -0.3 430,447 - MMJJ_RS02275 0.75 -1.9 430,536 - MMJJ_RS02275 0.90 -0.0 430,566 + -0.0 430,568 - -2.1 430,569 + +0.3 430,579 - -0.8 430,613 + -3.0 430,619 + -0.8 430,622 - +0.3 430,622 - -0.3 430,622 - -0.3 430,623 + -0.3 430,623 + -0.3 430,624 - -1.2 430,680 - +0.9 430,680 - -1.0 430,693 - -1.8 430,693 - -2.1 430,693 - -1.3 430,694 + +0.5 430,698 + -0.3 430,699 - +0.8 430,700 + +2.6 430,700 + -0.3 430,700 + -0.3 430,700 + +1.5 430,705 + +1.5 430,710 + +2.8 430,722 + -1.7 430,736 + -0.7 430,739 - +2.9 430,740 + +1.0 430,740 + -2.2 430,740 + +0.1 430,741 - +0.7 430,741 - +2.0 430,742 + -1.4 430,743 - +2.5 430,744 + -0.1 430,762 - -3.0 430,764 - +2.5 430,765 + +1.0 430,765 + +5.0 430,787 + +1.2 430,790 - -2.6 430,796 + +2.8 430,796 + -1.6 430,808 + +2.3 430,808 + -2.3 430,828 - -3.7 430,828 - +5.6 430,828 - -3.2 430,828 - +1.4 430,828 - -0.6 430,828 - -1.6 430,828 - -1.3 430,828 - -0.6 430,829 + +1.2 430,829 + -0.3 430,846 + +1.4 430,878 + +3.0 430,901 - +0.4 430,902 + +2.0 430,964 - +2.8 430,992 + -0.0 430,992 + -2.2 431,073 - MMJJ_RS02280 0.15 +3.5 431,074 + MMJJ_RS02280 0.15 +0.6 431,126 - MMJJ_RS02280 0.18 -3.3 431,160 - MMJJ_RS02280 0.20 +1.3 431,196 - MMJJ_RS02280 0.22 +3.3 431,197 + MMJJ_RS02280 0.22 +2.7 431,217 + MMJJ_RS02280 0.23 -2.7 431,295 - MMJJ_RS02280 0.28 -0.7 431,295 - MMJJ_RS02280 0.28 +2.8 431,299 - MMJJ_RS02280 0.28 -1.3 431,300 + MMJJ_RS02280 0.28 +0.3 431,300 + MMJJ_RS02280 0.28 +2.5 431,300 + MMJJ_RS02280 0.28 +3.4 431,300 + MMJJ_RS02280 0.28 -3.4 431,310 - MMJJ_RS02280 0.29 -0.1 431,321 - MMJJ_RS02280 0.30 +4.9 431,321 - MMJJ_RS02280 0.30 +2.7 431,321 - MMJJ_RS02280 0.30 -1.7 431,322 + MMJJ_RS02280 0.30 +1.3 431,358 + MMJJ_RS02280 0.32 -0.7 431,362 + MMJJ_RS02280 0.32 +0.9 431,408 - MMJJ_RS02280 0.35 +2.2 431,417 - MMJJ_RS02280 0.35 -1.7 431,442 - MMJJ_RS02280 0.37 +1.5 431,443 + MMJJ_RS02280 0.37 +2.7 431,443 + -0.3 431,443 + MMJJ_RS02280 0.37 +0.0 431,454 + MMJJ_RS02280 0.38 -0.3 431,476 + MMJJ_RS02280 0.39 +1.6 431,568 - MMJJ_RS02280 0.44 +0.3 431,588 - MMJJ_RS02280 0.46 +0.3 431,634 - MMJJ_RS02280 0.48 -1.9 431,635 + MMJJ_RS02280 0.48 -1.6 431,679 - MMJJ_RS02280 0.51 +1.4 431,679 - MMJJ_RS02280 0.51 -0.3 431,680 + MMJJ_RS02280 0.51 +2.3 431,862 + MMJJ_RS02280 0.62 +1.0 431,868 + MMJJ_RS02280 0.63 -3.8 431,905 + MMJJ_RS02280 0.65 -1.4 431,919 - MMJJ_RS02280 0.66 +2.0 431,919 - MMJJ_RS02280 0.66 +0.2 431,920 + MMJJ_RS02280 0.66 +2.9 431,996 - MMJJ_RS02280 0.70 -0.5 432,026 - MMJJ_RS02280 0.72 +1.6 432,105 + MMJJ_RS02280 0.77 +0.2 432,190 + MMJJ_RS02280 0.82 -0.5 432,254 - MMJJ_RS02280 0.86 -0.0 432,254 - MMJJ_RS02280 0.86 +2.2 432,315 - MMJJ_RS02280 0.89 +1.4 432,315 - MMJJ_RS02280 0.89 +1.8 432,316 + MMJJ_RS02280 0.90 +0.5 432,328 + +1.6 432,350 - -1.1 432,378 - -0.6 432,378 - -3.0 432,402 - +2.7 432,423 + +0.4 432,446 - +4.1 432,447 + +1.5 432,450 + +3.0 432,455 - -0.9 432,456 + -1.8 432,477 + -0.7 432,562 - -2.3 432,617 + +2.1 432,621 + -2.2 432,657 - +0.1 432,706 - -2.9 432,706 - +4.9 432,707 + -1.5 432,710 - +0.4 432,756 - +0.3 432,757 + -1.4 432,811 - +2.3 432,812 + -0.8 432,817 - -0.8 432,817 - +0.8 432,818 + +0.9 432,818 + +0.5 432,818 + +0.1 432,838 - -1.5 432,839 + +0.2 432,839 + -0.9 432,844 - -4.1 432,844 - +2.7 432,844 - -1.1 432,844 - +1.8 432,844 - -1.0 432,844 - +0.7 432,844 - +3.7 432,844 - +0.3 432,844 - -1.3 432,844 - -1.8 432,844 - +0.9 432,844 - +1.6 432,844 - -1.9 432,844 - -0.7 432,844 - +4.0 432,844 - +1.7 432,845 + -0.5 432,845 + -1.6 432,845 + -2.4 432,845 + +1.4 432,845 + +0.2 432,845 + +1.3 432,845 + -3.0 432,845 + -1.9 432,845 + -0.0 432,845 + +0.7 432,845 + -1.4 432,845 + +0.9 432,845 + -1.8 432,845 + +0.3 432,845 + -4.9 432,845 + -0.2 432,845 + +1.0 432,845 + -3.4 432,846 - +1.2 432,846 - +1.1 432,846 - +1.2 432,846 - +2.5 432,846 - +0.7 432,846 - +0.4 432,846 - -0.1 432,846 - +0.3 432,846 - -1.7 432,846 - -1.3 432,846 - -0.0 432,846 - -0.7 432,847 + +4.1 432,847 + +1.3 432,847 + +2.0 432,847 + +0.5 432,847 + -1.1 432,847 + +3.3 432,847 + -1.3 432,847 + -3.2 432,847 + +2.1 432,847 + +2.0 432,847 + +2.2 432,848 - -1.6 432,848 - +2.4 432,848 - -0.3 432,848 - +0.8 432,848 - +1.0 432,849 + +0.3 432,849 + +0.3 432,849 + -0.0 432,849 + -2.0 432,849 + -1.1 432,849 + +1.6 432,849 + -1.1 432,849 + -2.3 432,849 + +3.1 432,862 - -1.0 432,868 - +0.4 432,869 + -0.1 432,869 + -1.4 432,869 + -0.3 432,869 + +3.2 432,873 + -1.5 432,873 + -1.3 432,887 + +4.1 432,895 - -0.7 432,912 - +3.6 432,913 + -1.5 433,019 - MMJJ_RS02285 0.48 +1.6 433,019 - MMJJ_RS02285 0.48 -0.5 433,020 + MMJJ_RS02285 0.48 +2.3 433,027 + MMJJ_RS02285 0.51 -3.3 433,082 - MMJJ_RS02285 0.76 +1.4 433,083 + MMJJ_RS02285 0.77 +0.7 433,121 - +2.7 433,121 - -2.8 433,125 - +2.3 433,126 + +0.2 433,126 + -2.2 433,133 + +2.2 433,138 + -0.3 433,139 - -1.0 433,162 - -0.3 433,163 + -1.7 433,166 - +4.4 433,180 + +1.6 433,185 + +3.6 433,199 + MMJJ_RS02290 0.10 -4.1 433,206 + MMJJ_RS02290 0.11 +1.3 433,215 + MMJJ_RS02290 0.13 -1.3 433,295 - MMJJ_RS02290 0.25 +3.0 433,296 + MMJJ_RS02290 0.26 +0.3 433,302 + MMJJ_RS02290 0.26 -0.5 433,352 - MMJJ_RS02290 0.34 -1.9 433,472 + MMJJ_RS02290 0.54 +0.4 433,472 + MMJJ_RS02290 0.54 +2.0
Or see this region's nucleotide sequence