Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02250 and MMJJ_RS02255 are separated by 4 nucleotides MMJJ_RS02255 and MMJJ_RS02260 are separated by 5 nucleotides MMJJ_RS02260 and MMJJ_RS02265 are separated by 120 nucleotides MMJJ_RS02265 and MMJJ_RS02270 are separated by 157 nucleotides MMJJ_RS02270 and MMJJ_RS02275 overlap by 14 nucleotides
MMJJ_RS02250: MMJJ_RS02250 - mechanosensitive ion channel family protein, at 425,846 to 426,928
_RS02250
MMJJ_RS02255: MMJJ_RS02255 - hypothetical protein, at 426,933 to 427,163
_RS02255
MMJJ_RS02260: MMJJ_RS02260 - hypothetical protein, at 427,169 to 427,738
_RS02260
MMJJ_RS02265: MMJJ_RS02265 - hypothetical protein, at 427,859 to 429,328
_RS02265
MMJJ_RS02270: MMJJ_RS02270 - HEPN domain-containing protein, at 429,486 to 429,995
_RS02270
MMJJ_RS02275: MMJJ_RS02275 - nucleotidyltransferase domain-containing protein, at 429,982 to 430,599
_RS02275
Position (kb) 427
428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 427.146 kb on + strand at 427.164 kb on + strand at 427.255 kb on - strand, within MMJJ_RS02260 at 427.256 kb on + strand, within MMJJ_RS02260 at 427.272 kb on + strand, within MMJJ_RS02260 at 427.274 kb on - strand, within MMJJ_RS02260 at 427.275 kb on + strand, within MMJJ_RS02260 at 427.275 kb on + strand, within MMJJ_RS02260 at 427.280 kb on - strand, within MMJJ_RS02260 at 427.280 kb on - strand, within MMJJ_RS02260 at 427.293 kb on + strand, within MMJJ_RS02260 at 427.293 kb on + strand, within MMJJ_RS02260 at 427.294 kb on - strand, within MMJJ_RS02260 at 427.295 kb on + strand, within MMJJ_RS02260 at 427.298 kb on - strand, within MMJJ_RS02260 at 427.298 kb on - strand, within MMJJ_RS02260 at 427.301 kb on - strand, within MMJJ_RS02260 at 427.302 kb on + strand, within MMJJ_RS02260 at 427.362 kb on - strand, within MMJJ_RS02260 at 427.362 kb on - strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.371 kb on + strand, within MMJJ_RS02260 at 427.371 kb on + strand, within MMJJ_RS02260 at 427.379 kb on - strand, within MMJJ_RS02260 at 427.380 kb on + strand, within MMJJ_RS02260 at 427.380 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.436 kb on - strand, within MMJJ_RS02260 at 427.488 kb on + strand, within MMJJ_RS02260 at 427.622 kb on - strand, within MMJJ_RS02260 at 427.625 kb on - strand, within MMJJ_RS02260 at 427.626 kb on + strand, within MMJJ_RS02260 at 427.643 kb on - strand, within MMJJ_RS02260 at 427.644 kb on + strand, within MMJJ_RS02260 at 427.673 kb on - strand, within MMJJ_RS02260 at 427.673 kb on - strand, within MMJJ_RS02260 at 427.716 kb on - strand at 427.723 kb on - strand at 427.724 kb on + strand at 427.738 kb on - strand at 427.739 kb on + strand at 427.739 kb on + strand at 427.755 kb on + strand at 427.763 kb on - strand at 427.763 kb on - strand at 427.768 kb on - strand at 427.769 kb on + strand at 427.769 kb on + strand at 427.839 kb on - strand at 427.889 kb on - strand at 427.910 kb on - strand at 428.055 kb on + strand, within MMJJ_RS02265 at 428.168 kb on - strand, within MMJJ_RS02265 at 428.170 kb on - strand, within MMJJ_RS02265 at 428.173 kb on - strand, within MMJJ_RS02265 at 428.178 kb on + strand, within MMJJ_RS02265 at 428.200 kb on - strand, within MMJJ_RS02265 at 428.201 kb on + strand, within MMJJ_RS02265 at 428.202 kb on - strand, within MMJJ_RS02265 at 428.318 kb on + strand, within MMJJ_RS02265 at 428.358 kb on + strand, within MMJJ_RS02265 at 428.416 kb on + strand, within MMJJ_RS02265 at 428.417 kb on + strand, within MMJJ_RS02265 at 428.450 kb on - strand, within MMJJ_RS02265 at 428.451 kb on + strand, within MMJJ_RS02265 at 428.453 kb on - strand, within MMJJ_RS02265 at 428.483 kb on - strand, within MMJJ_RS02265 at 428.484 kb on + strand, within MMJJ_RS02265 at 428.484 kb on + strand, within MMJJ_RS02265 at 428.540 kb on - strand, within MMJJ_RS02265 at 428.574 kb on + strand, within MMJJ_RS02265 at 428.574 kb on + strand, within MMJJ_RS02265 at 428.669 kb on + strand, within MMJJ_RS02265 at 428.671 kb on + strand, within MMJJ_RS02265 at 428.837 kb on - strand, within MMJJ_RS02265 at 428.837 kb on - strand, within MMJJ_RS02265 at 428.838 kb on + strand, within MMJJ_RS02265 at 428.838 kb on + strand, within MMJJ_RS02265 at 428.838 kb on + strand, within MMJJ_RS02265 at 428.844 kb on - strand, within MMJJ_RS02265 at 428.844 kb on - strand, within MMJJ_RS02265 at 428.845 kb on + strand, within MMJJ_RS02265 at 428.846 kb on - strand, within MMJJ_RS02265 at 428.875 kb on - strand, within MMJJ_RS02265 at 428.876 kb on + strand, within MMJJ_RS02265 at 428.876 kb on + strand, within MMJJ_RS02265 at 428.877 kb on - strand, within MMJJ_RS02265 at 428.877 kb on - strand, within MMJJ_RS02265 at 428.878 kb on + strand, within MMJJ_RS02265 at 428.878 kb on + strand, within MMJJ_RS02265 at 428.878 kb on + strand, within MMJJ_RS02265 at 428.880 kb on + strand, within MMJJ_RS02265 at 428.880 kb on + strand, within MMJJ_RS02265 at 428.882 kb on - strand, within MMJJ_RS02265 at 428.882 kb on - strand, within MMJJ_RS02265 at 428.883 kb on + strand, within MMJJ_RS02265 at 428.933 kb on - strand, within MMJJ_RS02265 at 428.933 kb on - strand, within MMJJ_RS02265 at 428.934 kb on + strand, within MMJJ_RS02265 at 428.988 kb on - strand, within MMJJ_RS02265 at 429.030 kb on + strand, within MMJJ_RS02265 at 429.125 kb on - strand, within MMJJ_RS02265 at 429.181 kb on - strand, within MMJJ_RS02265 at 429.235 kb on - strand at 429.289 kb on - strand at 429.302 kb on + strand at 429.309 kb on + strand at 429.331 kb on + strand at 429.357 kb on - strand at 429.357 kb on - strand at 429.357 kb on - strand at 429.357 kb on - strand at 429.358 kb on + strand at 429.358 kb on + strand at 429.359 kb on - strand at 429.359 kb on - strand at 429.360 kb on + strand at 429.365 kb on - strand at 429.365 kb on - strand at 429.365 kb on - strand at 429.366 kb on + strand at 429.366 kb on + strand at 429.366 kb on + strand at 429.366 kb on + strand at 429.366 kb on + strand at 429.382 kb on - strand at 429.383 kb on + strand at 429.383 kb on + strand at 429.394 kb on + strand at 429.406 kb on - strand at 429.410 kb on - strand at 429.423 kb on + strand at 429.433 kb on + strand at 429.435 kb on + strand at 429.458 kb on + strand at 429.516 kb on - strand at 429.546 kb on - strand, within MMJJ_RS02270 at 429.547 kb on + strand, within MMJJ_RS02270 at 429.610 kb on + strand, within MMJJ_RS02270 at 429.638 kb on - strand, within MMJJ_RS02270 at 429.703 kb on + strand, within MMJJ_RS02270 at 429.803 kb on - strand, within MMJJ_RS02270 at 429.843 kb on - strand, within MMJJ_RS02270 at 429.858 kb on + strand, within MMJJ_RS02270 at 429.943 kb on - strand, within MMJJ_RS02270 at 429.976 kb on - strand at 430.109 kb on + strand, within MMJJ_RS02275 at 430.111 kb on + strand, within MMJJ_RS02275 at 430.111 kb on + strand, within MMJJ_RS02275 at 430.111 kb on + strand, within MMJJ_RS02275 at 430.114 kb on - strand, within MMJJ_RS02275
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 427,146 + +0.1 427,164 + +3.3 427,255 - MMJJ_RS02260 0.15 +0.3 427,256 + MMJJ_RS02260 0.15 +0.9 427,272 + MMJJ_RS02260 0.18 -1.3 427,274 - MMJJ_RS02260 0.18 -2.8 427,275 + MMJJ_RS02260 0.19 +0.2 427,275 + MMJJ_RS02260 0.19 +0.3 427,280 - MMJJ_RS02260 0.19 -1.9 427,280 - MMJJ_RS02260 0.19 -2.1 427,293 + MMJJ_RS02260 0.22 +0.9 427,293 + MMJJ_RS02260 0.22 -3.0 427,294 - MMJJ_RS02260 0.22 +2.2 427,295 + MMJJ_RS02260 0.22 -2.9 427,298 - MMJJ_RS02260 0.23 -2.9 427,298 - MMJJ_RS02260 0.23 -3.0 427,301 - MMJJ_RS02260 0.23 +3.3 427,302 + MMJJ_RS02260 0.23 +0.8 427,362 - MMJJ_RS02260 0.34 +1.9 427,362 - MMJJ_RS02260 0.34 +0.1 427,363 + MMJJ_RS02260 0.34 +2.9 427,363 + MMJJ_RS02260 0.34 +2.5 427,363 + MMJJ_RS02260 0.34 -0.7 427,363 + MMJJ_RS02260 0.34 +1.9 427,371 + MMJJ_RS02260 0.35 -2.6 427,371 + MMJJ_RS02260 0.35 -2.5 427,379 - MMJJ_RS02260 0.37 -0.2 427,380 + MMJJ_RS02260 0.37 -0.3 427,380 + MMJJ_RS02260 0.37 -2.6 427,383 + MMJJ_RS02260 0.38 +2.1 427,383 + MMJJ_RS02260 0.38 -0.9 427,383 + MMJJ_RS02260 0.38 +1.7 427,392 + MMJJ_RS02260 0.39 -1.0 427,392 + MMJJ_RS02260 0.39 +2.3 427,392 + MMJJ_RS02260 0.39 +0.7 427,436 - MMJJ_RS02260 0.47 +1.0 427,488 + MMJJ_RS02260 0.56 -2.8 427,622 - MMJJ_RS02260 0.79 +0.2 427,625 - MMJJ_RS02260 0.80 +1.3 427,626 + MMJJ_RS02260 0.80 -2.8 427,643 - MMJJ_RS02260 0.83 +2.2 427,644 + MMJJ_RS02260 0.83 +0.5 427,673 - MMJJ_RS02260 0.88 +2.1 427,673 - MMJJ_RS02260 0.88 -1.1 427,716 - -0.7 427,723 - +1.3 427,724 + +1.6 427,738 - +3.7 427,739 + -0.3 427,739 + -1.9 427,755 + +1.8 427,763 - -1.6 427,763 - +1.8 427,768 - -0.1 427,769 + +2.0 427,769 + -0.6 427,839 - +2.1 427,889 - -2.0 427,910 - -1.8 428,055 + MMJJ_RS02265 0.13 -0.3 428,168 - MMJJ_RS02265 0.21 -1.9 428,170 - MMJJ_RS02265 0.21 +0.6 428,173 - MMJJ_RS02265 0.21 +1.7 428,178 + MMJJ_RS02265 0.22 -1.8 428,200 - MMJJ_RS02265 0.23 +0.2 428,201 + MMJJ_RS02265 0.23 -1.7 428,202 - MMJJ_RS02265 0.23 -0.5 428,318 + MMJJ_RS02265 0.31 +1.2 428,358 + MMJJ_RS02265 0.34 +0.5 428,416 + MMJJ_RS02265 0.38 +0.1 428,417 + MMJJ_RS02265 0.38 -2.0 428,450 - MMJJ_RS02265 0.40 -0.6 428,451 + MMJJ_RS02265 0.40 -3.4 428,453 - MMJJ_RS02265 0.40 -1.8 428,483 - MMJJ_RS02265 0.42 -0.4 428,484 + MMJJ_RS02265 0.43 +2.2 428,484 + MMJJ_RS02265 0.43 +2.0 428,540 - MMJJ_RS02265 0.46 +1.7 428,574 + MMJJ_RS02265 0.49 +1.1 428,574 + MMJJ_RS02265 0.49 +1.8 428,669 + MMJJ_RS02265 0.55 -1.8 428,671 + MMJJ_RS02265 0.55 -2.2 428,837 - MMJJ_RS02265 0.67 +2.0 428,837 - MMJJ_RS02265 0.67 +2.0 428,838 + MMJJ_RS02265 0.67 -1.5 428,838 + MMJJ_RS02265 0.67 +3.4 428,838 + MMJJ_RS02265 0.67 -1.3 428,844 - MMJJ_RS02265 0.67 -1.9 428,844 - MMJJ_RS02265 0.67 +0.9 428,845 + MMJJ_RS02265 0.67 -1.7 428,846 - MMJJ_RS02265 0.67 +1.2 428,875 - MMJJ_RS02265 0.69 -1.2 428,876 + MMJJ_RS02265 0.69 +3.4 428,876 + MMJJ_RS02265 0.69 -1.2 428,877 - MMJJ_RS02265 0.69 +1.3 428,877 - MMJJ_RS02265 0.69 +0.2 428,878 + MMJJ_RS02265 0.69 +1.3 428,878 + MMJJ_RS02265 0.69 +4.2 428,878 + MMJJ_RS02265 0.69 -2.4 428,880 + MMJJ_RS02265 0.69 -1.5 428,880 + MMJJ_RS02265 0.69 +0.9 428,882 - MMJJ_RS02265 0.70 -2.7 428,882 - MMJJ_RS02265 0.70 -1.0 428,883 + MMJJ_RS02265 0.70 +4.7 428,933 - MMJJ_RS02265 0.73 -1.5 428,933 - MMJJ_RS02265 0.73 +0.8 428,934 + MMJJ_RS02265 0.73 +0.1 428,988 - MMJJ_RS02265 0.77 +1.3 429,030 + MMJJ_RS02265 0.80 +4.1 429,125 - MMJJ_RS02265 0.86 +3.3 429,181 - MMJJ_RS02265 0.90 +2.5 429,235 - -0.7 429,289 - -0.7 429,302 + -2.2 429,309 + +2.6 429,331 + +1.2 429,357 - +0.1 429,357 - +0.8 429,357 - +1.4 429,357 - -2.6 429,358 + +1.7 429,358 + -0.3 429,359 - +2.3 429,359 - +3.7 429,360 + +0.2 429,365 - +1.0 429,365 - +1.6 429,365 - +3.1 429,366 + -0.4 429,366 + +5.3 429,366 + -0.9 429,366 + -2.4 429,366 + +2.3 429,382 - +1.4 429,383 + -0.7 429,383 + +0.3 429,394 + -0.9 429,406 - -2.0 429,410 - -2.7 429,423 + -2.4 429,433 + +1.2 429,435 + +0.1 429,458 + -1.3 429,516 - +1.4 429,546 - MMJJ_RS02270 0.12 +0.4 429,547 + MMJJ_RS02270 0.12 -2.2 429,610 + MMJJ_RS02270 0.24 -1.1 429,638 - MMJJ_RS02270 0.30 +1.8 429,703 + MMJJ_RS02270 0.43 +2.4 429,803 - MMJJ_RS02270 0.62 +1.7 429,843 - MMJJ_RS02270 0.70 -1.0 429,858 + MMJJ_RS02270 0.73 +0.2 429,943 - MMJJ_RS02270 0.90 -0.3 429,976 - -2.4 430,109 + MMJJ_RS02275 0.21 -0.1 430,111 + MMJJ_RS02275 0.21 -1.3 430,111 + MMJJ_RS02275 0.21 -1.9 430,111 + MMJJ_RS02275 0.21 -1.3 430,114 - MMJJ_RS02275 0.21 +1.3
Or see this region's nucleotide sequence