Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02240 and MMJJ_RS02245 are separated by 150 nucleotides MMJJ_RS02245 and MMJJ_RS02250 are separated by 0 nucleotides MMJJ_RS02250 and MMJJ_RS02255 are separated by 4 nucleotides MMJJ_RS02255 and MMJJ_RS02260 are separated by 5 nucleotides MMJJ_RS02260 and MMJJ_RS02265 are separated by 120 nucleotides
MMJJ_RS02240: MMJJ_RS02240 - CGGC domain-containing protein, at 424,643 to 425,056
_RS02240
MMJJ_RS02245: MMJJ_RS02245 - DUF432 domain-containing protein, at 425,207 to 425,845
_RS02245
MMJJ_RS02250: MMJJ_RS02250 - mechanosensitive ion channel family protein, at 425,846 to 426,928
_RS02250
MMJJ_RS02255: MMJJ_RS02255 - hypothetical protein, at 426,933 to 427,163
_RS02255
MMJJ_RS02260: MMJJ_RS02260 - hypothetical protein, at 427,169 to 427,738
_RS02260
MMJJ_RS02265: MMJJ_RS02265 - hypothetical protein, at 427,859 to 429,328
_RS02265
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 424.898 kb on + strand, within MMJJ_RS02240 at 424.920 kb on + strand, within MMJJ_RS02240 at 424.948 kb on + strand, within MMJJ_RS02240 at 424.960 kb on + strand, within MMJJ_RS02240 at 425.098 kb on - strand at 425.098 kb on - strand at 425.098 kb on - strand at 425.196 kb on - strand at 425.196 kb on - strand at 425.197 kb on + strand at 425.197 kb on + strand at 425.198 kb on + strand at 425.198 kb on - strand at 425.198 kb on - strand at 425.199 kb on + strand at 425.199 kb on + strand at 425.199 kb on + strand at 425.199 kb on + strand at 425.200 kb on - strand at 425.200 kb on - strand at 425.200 kb on - strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.201 kb on + strand at 425.203 kb on - strand at 425.206 kb on - strand at 425.226 kb on - strand at 425.286 kb on - strand, within MMJJ_RS02245 at 425.294 kb on - strand, within MMJJ_RS02245 at 425.295 kb on + strand, within MMJJ_RS02245 at 425.319 kb on - strand, within MMJJ_RS02245 at 425.388 kb on - strand, within MMJJ_RS02245 at 425.414 kb on + strand, within MMJJ_RS02245 at 425.493 kb on - strand, within MMJJ_RS02245 at 425.494 kb on + strand, within MMJJ_RS02245 at 425.494 kb on + strand, within MMJJ_RS02245 at 425.500 kb on + strand, within MMJJ_RS02245 at 425.522 kb on - strand, within MMJJ_RS02245 at 425.523 kb on + strand, within MMJJ_RS02245 at 425.524 kb on - strand, within MMJJ_RS02245 at 425.547 kb on - strand, within MMJJ_RS02245 at 425.548 kb on + strand, within MMJJ_RS02245 at 425.564 kb on - strand, within MMJJ_RS02245 at 425.565 kb on + strand, within MMJJ_RS02245 at 425.580 kb on - strand, within MMJJ_RS02245 at 425.580 kb on - strand, within MMJJ_RS02245 at 425.580 kb on - strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.581 kb on + strand, within MMJJ_RS02245 at 425.583 kb on + strand, within MMJJ_RS02245 at 425.584 kb on - strand, within MMJJ_RS02245 at 425.584 kb on - strand, within MMJJ_RS02245 at 425.584 kb on - strand, within MMJJ_RS02245 at 425.585 kb on + strand, within MMJJ_RS02245 at 425.585 kb on + strand, within MMJJ_RS02245 at 425.587 kb on - strand, within MMJJ_RS02245 at 425.587 kb on - strand, within MMJJ_RS02245 at 425.587 kb on - strand, within MMJJ_RS02245 at 425.588 kb on + strand, within MMJJ_RS02245 at 425.626 kb on - strand, within MMJJ_RS02245 at 425.688 kb on - strand, within MMJJ_RS02245 at 425.689 kb on + strand, within MMJJ_RS02245 at 425.689 kb on + strand, within MMJJ_RS02245 at 425.693 kb on - strand, within MMJJ_RS02245 at 425.694 kb on + strand, within MMJJ_RS02245 at 425.932 kb on + strand at 426.010 kb on + strand, within MMJJ_RS02250 at 426.048 kb on - strand, within MMJJ_RS02250 at 426.057 kb on - strand, within MMJJ_RS02250 at 426.057 kb on - strand, within MMJJ_RS02250 at 426.058 kb on + strand, within MMJJ_RS02250 at 426.063 kb on - strand, within MMJJ_RS02250 at 426.075 kb on - strand, within MMJJ_RS02250 at 426.076 kb on + strand, within MMJJ_RS02250 at 426.084 kb on - strand, within MMJJ_RS02250 at 426.084 kb on - strand, within MMJJ_RS02250 at 426.097 kb on + strand, within MMJJ_RS02250 at 426.097 kb on + strand, within MMJJ_RS02250 at 426.101 kb on - strand, within MMJJ_RS02250 at 426.102 kb on + strand, within MMJJ_RS02250 at 426.102 kb on + strand, within MMJJ_RS02250 at 426.108 kb on - strand, within MMJJ_RS02250 at 426.108 kb on - strand, within MMJJ_RS02250 at 426.137 kb on - strand, within MMJJ_RS02250 at 426.165 kb on + strand, within MMJJ_RS02250 at 426.314 kb on + strand, within MMJJ_RS02250 at 426.356 kb on + strand, within MMJJ_RS02250 at 426.357 kb on - strand, within MMJJ_RS02250 at 426.358 kb on + strand at 426.526 kb on + strand, within MMJJ_RS02250 at 426.537 kb on - strand, within MMJJ_RS02250 at 426.541 kb on - strand, within MMJJ_RS02250 at 426.541 kb on - strand, within MMJJ_RS02250 at 426.609 kb on - strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.656 kb on + strand, within MMJJ_RS02250 at 426.666 kb on - strand, within MMJJ_RS02250 at 426.683 kb on - strand, within MMJJ_RS02250 at 426.683 kb on - strand, within MMJJ_RS02250 at 426.684 kb on + strand, within MMJJ_RS02250 at 426.684 kb on + strand, within MMJJ_RS02250 at 426.687 kb on - strand, within MMJJ_RS02250 at 426.687 kb on - strand, within MMJJ_RS02250 at 426.746 kb on + strand, within MMJJ_RS02250 at 426.747 kb on - strand, within MMJJ_RS02250 at 426.747 kb on - strand, within MMJJ_RS02250 at 426.748 kb on + strand, within MMJJ_RS02250 at 426.748 kb on + strand, within MMJJ_RS02250 at 426.753 kb on - strand, within MMJJ_RS02250 at 426.782 kb on - strand, within MMJJ_RS02250 at 426.782 kb on - strand, within MMJJ_RS02250 at 427.146 kb on + strand at 427.164 kb on + strand at 427.255 kb on - strand, within MMJJ_RS02260 at 427.256 kb on + strand, within MMJJ_RS02260 at 427.272 kb on + strand, within MMJJ_RS02260 at 427.274 kb on - strand, within MMJJ_RS02260 at 427.275 kb on + strand, within MMJJ_RS02260 at 427.275 kb on + strand, within MMJJ_RS02260 at 427.280 kb on - strand, within MMJJ_RS02260 at 427.280 kb on - strand, within MMJJ_RS02260 at 427.293 kb on + strand, within MMJJ_RS02260 at 427.293 kb on + strand, within MMJJ_RS02260 at 427.294 kb on - strand, within MMJJ_RS02260 at 427.295 kb on + strand, within MMJJ_RS02260 at 427.298 kb on - strand, within MMJJ_RS02260 at 427.298 kb on - strand, within MMJJ_RS02260 at 427.301 kb on - strand, within MMJJ_RS02260 at 427.302 kb on + strand, within MMJJ_RS02260 at 427.362 kb on - strand, within MMJJ_RS02260 at 427.362 kb on - strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.363 kb on + strand, within MMJJ_RS02260 at 427.371 kb on + strand, within MMJJ_RS02260 at 427.371 kb on + strand, within MMJJ_RS02260 at 427.379 kb on - strand, within MMJJ_RS02260 at 427.380 kb on + strand, within MMJJ_RS02260 at 427.380 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.383 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.392 kb on + strand, within MMJJ_RS02260 at 427.436 kb on - strand, within MMJJ_RS02260 at 427.488 kb on + strand, within MMJJ_RS02260 at 427.622 kb on - strand, within MMJJ_RS02260 at 427.625 kb on - strand, within MMJJ_RS02260 at 427.626 kb on + strand, within MMJJ_RS02260 at 427.643 kb on - strand, within MMJJ_RS02260 at 427.644 kb on + strand, within MMJJ_RS02260 at 427.673 kb on - strand, within MMJJ_RS02260 at 427.673 kb on - strand, within MMJJ_RS02260 at 427.716 kb on - strand at 427.723 kb on - strand at 427.724 kb on + strand at 427.738 kb on - strand at 427.739 kb on + strand at 427.739 kb on + strand at 427.755 kb on + strand at 427.763 kb on - strand at 427.763 kb on - strand at 427.768 kb on - strand at 427.769 kb on + strand at 427.769 kb on + strand at 427.839 kb on - strand at 427.889 kb on - strand at 427.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 424,898 + MMJJ_RS02240 0.62 +2.0 424,920 + MMJJ_RS02240 0.67 -0.9 424,948 + MMJJ_RS02240 0.74 +2.6 424,960 + MMJJ_RS02240 0.77 -1.9 425,098 - -1.6 425,098 - +1.4 425,098 - +3.8 425,196 - -0.7 425,196 - +2.5 425,197 + -1.0 425,197 + -1.8 425,198 + -0.7 425,198 - -1.8 425,198 - +1.1 425,199 + -0.7 425,199 + +4.6 425,199 + +0.5 425,199 + +2.8 425,200 - -2.0 425,200 - +1.2 425,200 - +0.4 425,201 + +1.8 425,201 + -1.0 425,201 + -1.7 425,201 + -1.5 425,201 + +0.3 425,203 - -0.3 425,206 - -0.8 425,226 - -2.5 425,286 - MMJJ_RS02245 0.12 -0.5 425,294 - MMJJ_RS02245 0.14 +1.3 425,295 + MMJJ_RS02245 0.14 -0.5 425,319 - MMJJ_RS02245 0.18 -1.9 425,388 - MMJJ_RS02245 0.28 -1.7 425,414 + MMJJ_RS02245 0.32 -2.2 425,493 - MMJJ_RS02245 0.45 -3.5 425,494 + MMJJ_RS02245 0.45 +0.8 425,494 + MMJJ_RS02245 0.45 -0.3 425,500 + MMJJ_RS02245 0.46 -0.3 425,522 - MMJJ_RS02245 0.49 -1.3 425,523 + MMJJ_RS02245 0.49 -3.1 425,524 - MMJJ_RS02245 0.50 +0.8 425,547 - MMJJ_RS02245 0.53 -1.0 425,548 + MMJJ_RS02245 0.53 +3.5 425,564 - MMJJ_RS02245 0.56 +2.0 425,565 + MMJJ_RS02245 0.56 -1.7 425,580 - MMJJ_RS02245 0.58 -0.8 425,580 - MMJJ_RS02245 0.58 -1.3 425,580 - MMJJ_RS02245 0.58 -2.5 425,581 + MMJJ_RS02245 0.59 +2.5 425,581 + MMJJ_RS02245 0.59 -3.2 425,581 + MMJJ_RS02245 0.59 +5.1 425,581 + MMJJ_RS02245 0.59 -1.7 425,581 + MMJJ_RS02245 0.59 -2.8 425,583 + MMJJ_RS02245 0.59 +2.1 425,584 - MMJJ_RS02245 0.59 -0.8 425,584 - MMJJ_RS02245 0.59 +2.5 425,584 - MMJJ_RS02245 0.59 -0.9 425,585 + MMJJ_RS02245 0.59 -1.2 425,585 + MMJJ_RS02245 0.59 +4.2 425,587 - MMJJ_RS02245 0.59 -0.9 425,587 - MMJJ_RS02245 0.59 -2.9 425,587 - MMJJ_RS02245 0.59 +1.6 425,588 + MMJJ_RS02245 0.60 -0.4 425,626 - MMJJ_RS02245 0.66 +0.6 425,688 - MMJJ_RS02245 0.75 -1.2 425,689 + MMJJ_RS02245 0.75 +0.9 425,689 + MMJJ_RS02245 0.75 +2.3 425,693 - MMJJ_RS02245 0.76 -1.1 425,694 + MMJJ_RS02245 0.76 +1.3 425,932 + -0.7 426,010 + MMJJ_RS02250 0.15 -1.2 426,048 - MMJJ_RS02250 0.19 -2.7 426,057 - MMJJ_RS02250 0.19 -0.4 426,057 - MMJJ_RS02250 0.19 -2.8 426,058 + MMJJ_RS02250 0.20 -0.5 426,063 - MMJJ_RS02250 0.20 -3.2 426,075 - MMJJ_RS02250 0.21 +0.2 426,076 + MMJJ_RS02250 0.21 -0.1 426,084 - MMJJ_RS02250 0.22 +2.4 426,084 - MMJJ_RS02250 0.22 -1.0 426,097 + MMJJ_RS02250 0.23 -0.7 426,097 + MMJJ_RS02250 0.23 -1.9 426,101 - MMJJ_RS02250 0.24 +0.4 426,102 + MMJJ_RS02250 0.24 +1.1 426,102 + MMJJ_RS02250 0.24 -1.1 426,108 - MMJJ_RS02250 0.24 -1.6 426,108 - MMJJ_RS02250 0.24 -1.4 426,137 - MMJJ_RS02250 0.27 +0.1 426,165 + MMJJ_RS02250 0.29 -2.9 426,314 + MMJJ_RS02250 0.43 -0.7 426,356 + MMJJ_RS02250 0.47 +1.1 426,357 - MMJJ_RS02250 0.47 -2.2 426,358 + -0.3 426,526 + MMJJ_RS02250 0.63 +1.4 426,537 - MMJJ_RS02250 0.64 -0.3 426,541 - MMJJ_RS02250 0.64 -1.0 426,541 - MMJJ_RS02250 0.64 +0.3 426,609 - MMJJ_RS02250 0.70 -0.5 426,656 + MMJJ_RS02250 0.75 -1.3 426,656 + MMJJ_RS02250 0.75 +2.4 426,656 + MMJJ_RS02250 0.75 -1.8 426,656 + MMJJ_RS02250 0.75 +1.7 426,666 - MMJJ_RS02250 0.76 +2.5 426,683 - MMJJ_RS02250 0.77 +1.9 426,683 - MMJJ_RS02250 0.77 -1.1 426,684 + MMJJ_RS02250 0.77 +0.0 426,684 + MMJJ_RS02250 0.77 +0.7 426,687 - MMJJ_RS02250 0.78 -2.8 426,687 - MMJJ_RS02250 0.78 +2.0 426,746 + MMJJ_RS02250 0.83 -0.3 426,747 - MMJJ_RS02250 0.83 +0.0 426,747 - MMJJ_RS02250 0.83 -0.4 426,748 + MMJJ_RS02250 0.83 -2.2 426,748 + MMJJ_RS02250 0.83 -0.6 426,753 - MMJJ_RS02250 0.84 +1.5 426,782 - MMJJ_RS02250 0.86 -3.6 426,782 - MMJJ_RS02250 0.86 -1.2 427,146 + +0.1 427,164 + +3.3 427,255 - MMJJ_RS02260 0.15 +0.3 427,256 + MMJJ_RS02260 0.15 +0.9 427,272 + MMJJ_RS02260 0.18 -1.3 427,274 - MMJJ_RS02260 0.18 -2.8 427,275 + MMJJ_RS02260 0.19 +0.2 427,275 + MMJJ_RS02260 0.19 +0.3 427,280 - MMJJ_RS02260 0.19 -1.9 427,280 - MMJJ_RS02260 0.19 -2.1 427,293 + MMJJ_RS02260 0.22 +0.9 427,293 + MMJJ_RS02260 0.22 -3.0 427,294 - MMJJ_RS02260 0.22 +2.2 427,295 + MMJJ_RS02260 0.22 -2.9 427,298 - MMJJ_RS02260 0.23 -2.9 427,298 - MMJJ_RS02260 0.23 -3.0 427,301 - MMJJ_RS02260 0.23 +3.3 427,302 + MMJJ_RS02260 0.23 +0.8 427,362 - MMJJ_RS02260 0.34 +1.9 427,362 - MMJJ_RS02260 0.34 +0.1 427,363 + MMJJ_RS02260 0.34 +2.9 427,363 + MMJJ_RS02260 0.34 +2.5 427,363 + MMJJ_RS02260 0.34 -0.7 427,363 + MMJJ_RS02260 0.34 +1.9 427,371 + MMJJ_RS02260 0.35 -2.6 427,371 + MMJJ_RS02260 0.35 -2.5 427,379 - MMJJ_RS02260 0.37 -0.2 427,380 + MMJJ_RS02260 0.37 -0.3 427,380 + MMJJ_RS02260 0.37 -2.6 427,383 + MMJJ_RS02260 0.38 +2.1 427,383 + MMJJ_RS02260 0.38 -0.9 427,383 + MMJJ_RS02260 0.38 +1.7 427,392 + MMJJ_RS02260 0.39 -1.0 427,392 + MMJJ_RS02260 0.39 +2.3 427,392 + MMJJ_RS02260 0.39 +0.7 427,436 - MMJJ_RS02260 0.47 +1.0 427,488 + MMJJ_RS02260 0.56 -2.8 427,622 - MMJJ_RS02260 0.79 +0.2 427,625 - MMJJ_RS02260 0.80 +1.3 427,626 + MMJJ_RS02260 0.80 -2.8 427,643 - MMJJ_RS02260 0.83 +2.2 427,644 + MMJJ_RS02260 0.83 +0.5 427,673 - MMJJ_RS02260 0.88 +2.1 427,673 - MMJJ_RS02260 0.88 -1.1 427,716 - -0.7 427,723 - +1.3 427,724 + +1.6 427,738 - +3.7 427,739 + -0.3 427,739 + -1.9 427,755 + +1.8 427,763 - -1.6 427,763 - +1.8 427,768 - -0.1 427,769 + +2.0 427,769 + -0.6 427,839 - +2.1 427,889 - -2.0 427,910 - -1.8
Or see this region's nucleotide sequence