Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02220 and MMJJ_RS02225 are separated by 180 nucleotides MMJJ_RS02225 and MMJJ_RS02230 are separated by 254 nucleotides MMJJ_RS02230 and MMJJ_RS02235 are separated by 93 nucleotides
MMJJ_RS02220: MMJJ_RS02220 - 3-isopropylmalate dehydrogenase, at 421,125 to 422,117
_RS02220
MMJJ_RS02225: MMJJ_RS02225 - hypothetical protein, at 422,298 to 422,588
_RS02225
MMJJ_RS02230: MMJJ_RS02230 - hypothetical protein, at 422,843 to 423,454
_RS02230
MMJJ_RS02235: MMJJ_RS02235 - DUF123 domain-containing protein, at 423,548 to 424,618
_RS02235
Position (kb) 422
423 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 422.173 kb on + strand at 422.236 kb on - strand at 422.245 kb on - strand at 422.320 kb on - strand at 422.371 kb on - strand, within MMJJ_RS02225 at 422.401 kb on + strand, within MMJJ_RS02225 at 422.407 kb on + strand, within MMJJ_RS02225 at 422.411 kb on - strand, within MMJJ_RS02225 at 422.412 kb on + strand, within MMJJ_RS02225 at 422.414 kb on + strand, within MMJJ_RS02225 at 422.429 kb on - strand, within MMJJ_RS02225 at 422.468 kb on - strand, within MMJJ_RS02225 at 422.469 kb on + strand, within MMJJ_RS02225 at 422.479 kb on - strand, within MMJJ_RS02225 at 422.479 kb on - strand, within MMJJ_RS02225 at 422.481 kb on - strand, within MMJJ_RS02225 at 422.481 kb on - strand, within MMJJ_RS02225 at 422.482 kb on + strand, within MMJJ_RS02225 at 422.482 kb on + strand, within MMJJ_RS02225 at 422.482 kb on + strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.484 kb on + strand, within MMJJ_RS02225 at 422.484 kb on + strand, within MMJJ_RS02225 at 422.484 kb on + strand, within MMJJ_RS02225 at 422.520 kb on + strand, within MMJJ_RS02225 at 422.528 kb on - strand, within MMJJ_RS02225 at 422.528 kb on - strand, within MMJJ_RS02225 at 422.532 kb on - strand, within MMJJ_RS02225 at 422.532 kb on - strand, within MMJJ_RS02225 at 422.533 kb on + strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.536 kb on + strand, within MMJJ_RS02225 at 422.536 kb on + strand, within MMJJ_RS02225 at 422.536 kb on + strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.582 kb on + strand at 422.610 kb on - strand at 422.611 kb on + strand at 422.616 kb on + strand at 422.619 kb on - strand at 422.626 kb on - strand at 422.627 kb on + strand at 422.627 kb on + strand at 422.628 kb on - strand at 422.628 kb on - strand at 422.628 kb on - strand at 422.634 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.665 kb on - strand at 422.665 kb on - strand at 422.666 kb on + strand at 422.666 kb on + strand at 422.669 kb on - strand at 422.669 kb on - strand at 422.670 kb on + strand at 422.692 kb on - strand at 422.692 kb on - strand at 422.693 kb on + strand at 422.697 kb on + strand at 422.724 kb on - strand at 422.725 kb on + strand at 422.827 kb on - strand at 422.940 kb on - strand, within MMJJ_RS02230 at 422.940 kb on - strand, within MMJJ_RS02230 at 422.941 kb on + strand, within MMJJ_RS02230 at 422.978 kb on - strand, within MMJJ_RS02230 at 422.978 kb on - strand, within MMJJ_RS02230 at 422.979 kb on + strand, within MMJJ_RS02230 at 422.979 kb on + strand, within MMJJ_RS02230 at 423.051 kb on - strand, within MMJJ_RS02230 at 423.062 kb on - strand, within MMJJ_RS02230 at 423.062 kb on - strand, within MMJJ_RS02230 at 423.063 kb on + strand, within MMJJ_RS02230 at 423.086 kb on - strand, within MMJJ_RS02230 at 423.107 kb on + strand, within MMJJ_RS02230 at 423.107 kb on + strand, within MMJJ_RS02230 at 423.157 kb on - strand, within MMJJ_RS02230 at 423.159 kb on - strand, within MMJJ_RS02230 at 423.190 kb on - strand, within MMJJ_RS02230 at 423.215 kb on - strand, within MMJJ_RS02230 at 423.222 kb on + strand, within MMJJ_RS02230 at 423.250 kb on - strand, within MMJJ_RS02230 at 423.251 kb on + strand, within MMJJ_RS02230 at 423.286 kb on - strand, within MMJJ_RS02230 at 423.287 kb on + strand, within MMJJ_RS02230 at 423.300 kb on + strand, within MMJJ_RS02230 at 423.300 kb on + strand, within MMJJ_RS02230 at 423.306 kb on + strand, within MMJJ_RS02230 at 423.306 kb on + strand, within MMJJ_RS02230 at 423.306 kb on + strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.313 kb on - strand, within MMJJ_RS02230 at 423.314 kb on + strand, within MMJJ_RS02230 at 423.325 kb on - strand, within MMJJ_RS02230 at 423.325 kb on - strand, within MMJJ_RS02230 at 423.325 kb on - strand, within MMJJ_RS02230 at 423.328 kb on + strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.335 kb on + strand, within MMJJ_RS02230 at 423.335 kb on + strand, within MMJJ_RS02230 at 423.340 kb on + strand, within MMJJ_RS02230 at 423.380 kb on - strand, within MMJJ_RS02230 at 423.381 kb on + strand, within MMJJ_RS02230 at 423.381 kb on + strand, within MMJJ_RS02230 at 423.381 kb on + strand, within MMJJ_RS02230 at 423.418 kb on - strand at 423.418 kb on - strand at 423.440 kb on + strand at 423.442 kb on - strand at 423.506 kb on + strand at 423.509 kb on + strand at 423.511 kb on - strand at 423.511 kb on - strand at 423.512 kb on + strand at 423.520 kb on + strand at 423.522 kb on - strand at 423.524 kb on - strand at 423.524 kb on - strand at 423.525 kb on + strand at 423.526 kb on - strand at 423.526 kb on - strand at 423.527 kb on + strand at 423.527 kb on + strand at 423.575 kb on + strand at 423.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 422,173 + +0.7 422,236 - -0.7 422,245 - +0.6 422,320 - +1.7 422,371 - MMJJ_RS02225 0.25 -0.3 422,401 + MMJJ_RS02225 0.35 -1.8 422,407 + MMJJ_RS02225 0.37 -0.6 422,411 - MMJJ_RS02225 0.39 +1.8 422,412 + MMJJ_RS02225 0.39 -0.1 422,414 + MMJJ_RS02225 0.40 -1.5 422,429 - MMJJ_RS02225 0.45 +1.4 422,468 - MMJJ_RS02225 0.58 -2.4 422,469 + MMJJ_RS02225 0.59 -1.5 422,479 - MMJJ_RS02225 0.62 -1.7 422,479 - MMJJ_RS02225 0.62 +1.1 422,481 - MMJJ_RS02225 0.63 -3.4 422,481 - MMJJ_RS02225 0.63 +0.2 422,482 + MMJJ_RS02225 0.63 -1.4 422,482 + MMJJ_RS02225 0.63 -0.7 422,482 + MMJJ_RS02225 0.63 +1.1 422,483 - MMJJ_RS02225 0.64 +2.6 422,483 - MMJJ_RS02225 0.64 +0.3 422,483 - MMJJ_RS02225 0.64 -3.5 422,483 - MMJJ_RS02225 0.64 +2.2 422,483 - MMJJ_RS02225 0.64 +2.6 422,483 - MMJJ_RS02225 0.64 -0.1 422,484 + MMJJ_RS02225 0.64 -1.7 422,484 + MMJJ_RS02225 0.64 +1.5 422,484 + MMJJ_RS02225 0.64 -1.8 422,520 + MMJJ_RS02225 0.76 +0.9 422,528 - MMJJ_RS02225 0.79 -2.1 422,528 - MMJJ_RS02225 0.79 +1.8 422,532 - MMJJ_RS02225 0.80 +1.5 422,532 - MMJJ_RS02225 0.80 +0.6 422,533 + MMJJ_RS02225 0.81 -1.0 422,535 - MMJJ_RS02225 0.81 -1.8 422,535 - MMJJ_RS02225 0.81 +2.3 422,535 - MMJJ_RS02225 0.81 -0.4 422,535 - MMJJ_RS02225 0.81 +0.2 422,536 + MMJJ_RS02225 0.82 -1.4 422,536 + MMJJ_RS02225 0.82 +0.8 422,536 + MMJJ_RS02225 0.82 +2.3 422,537 - MMJJ_RS02225 0.82 -1.9 422,537 - MMJJ_RS02225 0.82 -1.5 422,537 - MMJJ_RS02225 0.82 -1.6 422,537 - MMJJ_RS02225 0.82 -0.8 422,537 - MMJJ_RS02225 0.82 -0.9 422,537 - MMJJ_RS02225 0.82 -1.3 422,538 + MMJJ_RS02225 0.82 -1.5 422,538 + MMJJ_RS02225 0.82 -1.1 422,538 + MMJJ_RS02225 0.82 -0.2 422,538 + MMJJ_RS02225 0.82 -0.7 422,582 + -2.0 422,610 - -1.1 422,611 + -2.1 422,616 + +3.5 422,619 - +3.7 422,626 - -0.7 422,627 + +2.1 422,627 + +3.3 422,628 - -0.8 422,628 - -0.6 422,628 - +0.4 422,634 - -2.9 422,656 - +1.4 422,656 - +2.9 422,656 - +3.7 422,656 - -1.0 422,656 - -1.6 422,656 - +2.9 422,656 - -2.3 422,656 - +0.4 422,656 - -2.2 422,656 - -2.4 422,656 - +0.8 422,656 - -0.7 422,656 - +4.8 422,657 + -0.1 422,657 + +0.9 422,657 + +2.6 422,657 + +0.6 422,657 + -1.3 422,657 + +1.6 422,657 + -2.7 422,657 + -2.3 422,657 + +1.2 422,657 + +2.1 422,657 + -1.7 422,658 - -1.5 422,658 - -2.4 422,658 - +0.1 422,658 - +3.1 422,658 - +0.0 422,659 + +1.1 422,659 + -2.3 422,659 + -3.9 422,659 + -0.9 422,659 + +0.7 422,659 + +2.8 422,659 + -1.6 422,659 + -0.7 422,660 - -0.2 422,660 - +2.8 422,660 - -0.6 422,660 - -2.9 422,660 - +1.3 422,661 + +2.6 422,661 + +2.5 422,661 + -0.4 422,661 + +1.8 422,661 + -0.7 422,661 + +1.0 422,661 + -2.0 422,665 - +1.9 422,665 - -1.4 422,666 + -2.1 422,666 + +3.4 422,669 - +1.4 422,669 - -1.7 422,670 + -0.1 422,692 - -0.5 422,692 - +2.3 422,693 + +0.8 422,697 + +2.2 422,724 - -0.8 422,725 + -2.3 422,827 - +1.5 422,940 - MMJJ_RS02230 0.16 -4.2 422,940 - MMJJ_RS02230 0.16 -0.3 422,941 + MMJJ_RS02230 0.16 -3.4 422,978 - MMJJ_RS02230 0.22 +0.3 422,978 - MMJJ_RS02230 0.22 +1.3 422,979 + MMJJ_RS02230 0.22 -0.5 422,979 + MMJJ_RS02230 0.22 -1.6 423,051 - MMJJ_RS02230 0.34 -2.1 423,062 - MMJJ_RS02230 0.36 -1.3 423,062 - MMJJ_RS02230 0.36 +2.3 423,063 + MMJJ_RS02230 0.36 -3.0 423,086 - MMJJ_RS02230 0.40 +2.8 423,107 + MMJJ_RS02230 0.43 +1.4 423,107 + MMJJ_RS02230 0.43 -2.4 423,157 - MMJJ_RS02230 0.51 +3.3 423,159 - MMJJ_RS02230 0.52 +3.9 423,190 - MMJJ_RS02230 0.57 +1.0 423,215 - MMJJ_RS02230 0.61 +0.7 423,222 + MMJJ_RS02230 0.62 -1.5 423,250 - MMJJ_RS02230 0.67 +4.3 423,251 + MMJJ_RS02230 0.67 +1.7 423,286 - MMJJ_RS02230 0.72 +0.0 423,287 + MMJJ_RS02230 0.73 -1.5 423,300 + MMJJ_RS02230 0.75 -1.1 423,300 + MMJJ_RS02230 0.75 +2.1 423,306 + MMJJ_RS02230 0.76 +0.3 423,306 + MMJJ_RS02230 0.76 +5.1 423,306 + MMJJ_RS02230 0.76 -1.1 423,311 - MMJJ_RS02230 0.76 +2.1 423,311 - MMJJ_RS02230 0.76 -3.8 423,311 - MMJJ_RS02230 0.76 +0.9 423,311 - MMJJ_RS02230 0.76 +0.3 423,311 - MMJJ_RS02230 0.76 -3.9 423,311 - MMJJ_RS02230 0.76 -2.6 423,311 - MMJJ_RS02230 0.76 +1.5 423,311 - MMJJ_RS02230 0.76 +1.2 423,311 - MMJJ_RS02230 0.76 +0.7 423,311 - MMJJ_RS02230 0.76 -0.6 423,312 + MMJJ_RS02230 0.77 +1.1 423,312 + MMJJ_RS02230 0.77 -2.9 423,312 + MMJJ_RS02230 0.77 +0.3 423,312 + MMJJ_RS02230 0.77 -2.8 423,312 + MMJJ_RS02230 0.77 +2.4 423,312 + MMJJ_RS02230 0.77 +1.3 423,312 + MMJJ_RS02230 0.77 +2.0 423,312 + MMJJ_RS02230 0.77 +3.0 423,312 + MMJJ_RS02230 0.77 +0.1 423,312 + MMJJ_RS02230 0.77 +0.5 423,312 + MMJJ_RS02230 0.77 +1.8 423,312 + MMJJ_RS02230 0.77 +0.1 423,312 + MMJJ_RS02230 0.77 +1.4 423,312 + MMJJ_RS02230 0.77 +3.1 423,312 + MMJJ_RS02230 0.77 -0.3 423,313 - MMJJ_RS02230 0.77 +0.6 423,314 + MMJJ_RS02230 0.77 -1.0 423,325 - MMJJ_RS02230 0.79 -0.4 423,325 - MMJJ_RS02230 0.79 +2.5 423,325 - MMJJ_RS02230 0.79 +2.7 423,328 + MMJJ_RS02230 0.79 -0.2 423,334 - MMJJ_RS02230 0.80 -2.7 423,334 - MMJJ_RS02230 0.80 +1.0 423,334 - MMJJ_RS02230 0.80 -0.1 423,334 - MMJJ_RS02230 0.80 -2.6 423,335 + MMJJ_RS02230 0.80 -1.5 423,335 + MMJJ_RS02230 0.80 -1.1 423,340 + MMJJ_RS02230 0.81 +2.1 423,380 - MMJJ_RS02230 0.88 +1.3 423,381 + MMJJ_RS02230 0.88 -1.8 423,381 + MMJJ_RS02230 0.88 +2.5 423,381 + MMJJ_RS02230 0.88 +0.8 423,418 - -0.7 423,418 - -2.1 423,440 + +2.3 423,442 - +0.3 423,506 + -3.3 423,509 + -2.6 423,511 - -1.5 423,511 - -1.1 423,512 + +1.4 423,520 + +1.6 423,522 - -0.3 423,524 - -0.1 423,524 - -0.8 423,525 + +3.1 423,526 - -0.6 423,526 - +1.3 423,527 + -3.5 423,527 + -0.5 423,575 + -1.4 423,587 + +1.0
Or see this region's nucleotide sequence