Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotides MMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotides MMJJ_RS02190 and MMJJ_RS02195 are separated by 26 nucleotides
MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539
_RS02180
MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212
_RS02185
MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279
_RS02190
MMJJ_RS02195: MMJJ_RS02195 - AmmeMemoRadiSam system radical SAM enzyme, at 417,306 to 418,316
_RS02195
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 414.450 kb on - strand at 414.453 kb on - strand at 414.531 kb on - strand at 414.531 kb on - strand at 414.532 kb on + strand at 414.532 kb on + strand at 414.534 kb on + strand at 414.563 kb on + strand at 414.563 kb on + strand at 414.569 kb on + strand at 414.569 kb on + strand at 414.573 kb on - strand at 414.574 kb on + strand at 414.612 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.695 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand at 414.768 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.778 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.924 kb on - strand, within MMJJ_RS02185 at 414.925 kb on + strand, within MMJJ_RS02185 at 414.960 kb on - strand, within MMJJ_RS02185 at 414.982 kb on - strand, within MMJJ_RS02185 at 414.997 kb on - strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 415.038 kb on - strand, within MMJJ_RS02185 at 415.068 kb on - strand, within MMJJ_RS02185 at 415.084 kb on - strand, within MMJJ_RS02185 at 415.116 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.149 kb on + strand, within MMJJ_RS02185 at 415.172 kb on - strand at 415.204 kb on - strand at 415.228 kb on + strand at 415.228 kb on + strand at 415.229 kb on - strand at 415.230 kb on + strand at 415.235 kb on + strand at 415.246 kb on - strand at 415.255 kb on - strand at 415.261 kb on + strand at 415.314 kb on - strand at 415.315 kb on + strand at 415.315 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.361 kb on - strand at 415.375 kb on + strand at 415.378 kb on - strand at 415.378 kb on - strand at 415.379 kb on + strand at 415.439 kb on - strand at 415.513 kb on - strand at 415.513 kb on - strand at 415.559 kb on - strand at 415.572 kb on - strand at 415.609 kb on + strand at 415.612 kb on - strand at 415.845 kb on - strand, within MMJJ_RS02190 at 415.846 kb on + strand, within MMJJ_RS02190 at 415.863 kb on - strand, within MMJJ_RS02190 at 415.865 kb on - strand, within MMJJ_RS02190 at 415.865 kb on - strand, within MMJJ_RS02190 at 415.892 kb on + strand, within MMJJ_RS02190 at 415.905 kb on - strand, within MMJJ_RS02190 at 415.915 kb on - strand, within MMJJ_RS02190 at 415.915 kb on - strand, within MMJJ_RS02190 at 415.916 kb on + strand, within MMJJ_RS02190 at 415.916 kb on + strand, within MMJJ_RS02190 at 415.916 kb on + strand, within MMJJ_RS02190 at 415.917 kb on - strand, within MMJJ_RS02190 at 415.917 kb on - strand, within MMJJ_RS02190 at 415.918 kb on + strand, within MMJJ_RS02190 at 415.918 kb on + strand, within MMJJ_RS02190 at 415.921 kb on + strand, within MMJJ_RS02190 at 415.939 kb on - strand, within MMJJ_RS02190 at 416.012 kb on + strand, within MMJJ_RS02190 at 416.044 kb on - strand, within MMJJ_RS02190 at 416.079 kb on - strand, within MMJJ_RS02190 at 416.082 kb on - strand, within MMJJ_RS02190 at 416.158 kb on - strand, within MMJJ_RS02190 at 416.159 kb on + strand, within MMJJ_RS02190 at 416.161 kb on + strand, within MMJJ_RS02190 at 416.161 kb on + strand, within MMJJ_RS02190 at 416.161 kb on + strand, within MMJJ_RS02190 at 416.177 kb on - strand, within MMJJ_RS02190 at 416.177 kb on - strand, within MMJJ_RS02190 at 416.177 kb on - strand, within MMJJ_RS02190 at 416.178 kb on + strand, within MMJJ_RS02190 at 416.178 kb on + strand, within MMJJ_RS02190 at 416.182 kb on + strand, within MMJJ_RS02190 at 416.265 kb on + strand, within MMJJ_RS02190 at 416.291 kb on - strand, within MMJJ_RS02190 at 416.291 kb on - strand, within MMJJ_RS02190 at 416.291 kb on - strand, within MMJJ_RS02190 at 416.292 kb on + strand, within MMJJ_RS02190 at 416.292 kb on + strand, within MMJJ_RS02190 at 416.292 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.296 kb on + strand, within MMJJ_RS02190 at 416.298 kb on - strand, within MMJJ_RS02190 at 416.300 kb on - strand, within MMJJ_RS02190 at 416.438 kb on + strand, within MMJJ_RS02190 at 416.528 kb on + strand, within MMJJ_RS02190 at 416.528 kb on + strand, within MMJJ_RS02190 at 416.536 kb on - strand, within MMJJ_RS02190 at 416.537 kb on + strand, within MMJJ_RS02190 at 416.537 kb on + strand, within MMJJ_RS02190 at 416.572 kb on - strand, within MMJJ_RS02190 at 416.583 kb on - strand, within MMJJ_RS02190 at 416.594 kb on + strand, within MMJJ_RS02190 at 416.629 kb on - strand, within MMJJ_RS02190 at 416.635 kb on + strand, within MMJJ_RS02190 at 416.635 kb on + strand, within MMJJ_RS02190 at 416.635 kb on + strand, within MMJJ_RS02190 at 416.652 kb on + strand, within MMJJ_RS02190 at 416.655 kb on - strand, within MMJJ_RS02190 at 416.656 kb on + strand, within MMJJ_RS02190 at 416.659 kb on - strand, within MMJJ_RS02190 at 416.659 kb on - strand, within MMJJ_RS02190 at 416.701 kb on - strand, within MMJJ_RS02190 at 416.726 kb on + strand, within MMJJ_RS02190 at 416.805 kb on - strand, within MMJJ_RS02190 at 416.826 kb on - strand, within MMJJ_RS02190 at 416.826 kb on - strand, within MMJJ_RS02190 at 416.827 kb on + strand, within MMJJ_RS02190 at 416.827 kb on + strand, within MMJJ_RS02190 at 416.827 kb on + strand, within MMJJ_RS02190 at 416.843 kb on + strand, within MMJJ_RS02190 at 416.843 kb on + strand, within MMJJ_RS02190 at 416.935 kb on + strand, within MMJJ_RS02190 at 416.939 kb on + strand, within MMJJ_RS02190 at 417.081 kb on + strand, within MMJJ_RS02190 at 417.155 kb on + strand at 417.258 kb on - strand at 417.268 kb on - strand at 417.272 kb on - strand at 417.282 kb on - strand at 417.283 kb on + strand at 417.292 kb on - strand at 417.308 kb on + strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.312 kb on - strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.313 kb on + strand at 417.366 kb on + strand at 417.376 kb on + strand at 417.419 kb on - strand, within MMJJ_RS02195 at 417.434 kb on + strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.474 kb on - strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.475 kb on + strand, within MMJJ_RS02195 at 417.484 kb on + strand, within MMJJ_RS02195 at 417.529 kb on + strand, within MMJJ_RS02195 at 417.537 kb on + strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.557 kb on - strand, within MMJJ_RS02195 at 417.559 kb on - strand, within MMJJ_RS02195 at 417.560 kb on + strand, within MMJJ_RS02195 at 417.658 kb on - strand, within MMJJ_RS02195 at 417.739 kb on + strand, within MMJJ_RS02195 at 417.754 kb on + strand, within MMJJ_RS02195 at 417.783 kb on - strand, within MMJJ_RS02195 at 417.785 kb on - strand, within MMJJ_RS02195 at 417.786 kb on + strand, within MMJJ_RS02195 at 417.839 kb on + strand, within MMJJ_RS02195 at 417.839 kb on + strand, within MMJJ_RS02195 at 417.855 kb on - strand, within MMJJ_RS02195 at 417.856 kb on + strand, within MMJJ_RS02195 at 417.916 kb on + strand, within MMJJ_RS02195 at 417.916 kb on + strand, within MMJJ_RS02195 at 417.930 kb on + strand, within MMJJ_RS02195 at 417.931 kb on - strand, within MMJJ_RS02195 at 417.932 kb on + strand, within MMJJ_RS02195 at 417.936 kb on + strand, within MMJJ_RS02195 at 418.055 kb on - strand, within MMJJ_RS02195 at 418.067 kb on - strand, within MMJJ_RS02195 at 418.068 kb on + strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.119 kb on - strand, within MMJJ_RS02195 at 418.120 kb on + strand, within MMJJ_RS02195 at 418.215 kb on - strand, within MMJJ_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 414,450 - +4.1 414,453 - -0.9 414,531 - -1.2 414,531 - +0.2 414,532 + -0.6 414,532 + +2.5 414,534 + -3.1 414,563 + +1.3 414,563 + -1.2 414,569 + -0.3 414,569 + -0.8 414,573 - +0.4 414,574 + -2.7 414,612 - -0.3 414,614 - -0.6 414,614 - +1.2 414,614 - +1.0 414,695 - MMJJ_RS02185 0.15 +2.7 414,768 - -0.8 414,768 - MMJJ_RS02185 0.27 +1.3 414,768 - MMJJ_RS02185 0.27 +0.6 414,770 - MMJJ_RS02185 0.28 +1.9 414,770 - MMJJ_RS02185 0.28 -2.0 414,778 + MMJJ_RS02185 0.29 -2.8 414,917 + MMJJ_RS02185 0.52 +1.4 414,917 + MMJJ_RS02185 0.52 +1.0 414,924 - MMJJ_RS02185 0.53 -2.2 414,925 + MMJJ_RS02185 0.53 +4.2 414,960 - MMJJ_RS02185 0.59 +2.2 414,982 - MMJJ_RS02185 0.62 -0.3 414,997 - MMJJ_RS02185 0.65 -0.7 414,998 + MMJJ_RS02185 0.65 -1.7 414,998 + MMJJ_RS02185 0.65 +1.2 415,038 - MMJJ_RS02185 0.71 +1.1 415,068 - MMJJ_RS02185 0.76 +0.0 415,084 - MMJJ_RS02185 0.79 +0.7 415,116 + MMJJ_RS02185 0.84 +2.2 415,145 + MMJJ_RS02185 0.89 +0.9 415,145 + MMJJ_RS02185 0.89 -0.8 415,149 + MMJJ_RS02185 0.90 -1.0 415,172 - -0.1 415,204 - +3.6 415,228 + +2.1 415,228 + +0.8 415,229 - -1.9 415,230 + -1.3 415,235 + +2.1 415,246 - +1.2 415,255 - +2.7 415,261 + -2.1 415,314 - +2.1 415,315 + +3.4 415,315 + +0.5 415,347 + +2.5 415,347 + +2.6 415,347 + +0.2 415,347 + +0.2 415,361 - -1.3 415,375 + -1.1 415,378 - +1.2 415,378 - +2.5 415,379 + +2.4 415,439 - -1.8 415,513 - +2.3 415,513 - +3.5 415,559 - +0.9 415,572 - +2.1 415,609 + +4.8 415,612 - +1.5 415,845 - MMJJ_RS02190 0.22 +3.6 415,846 + MMJJ_RS02190 0.23 +1.6 415,863 - MMJJ_RS02190 0.23 -0.3 415,865 - MMJJ_RS02190 0.24 +2.4 415,865 - MMJJ_RS02190 0.24 +3.8 415,892 + MMJJ_RS02190 0.25 -0.7 415,905 - MMJJ_RS02190 0.26 +3.0 415,915 - MMJJ_RS02190 0.26 +1.0 415,915 - MMJJ_RS02190 0.26 +0.7 415,916 + MMJJ_RS02190 0.26 +2.9 415,916 + MMJJ_RS02190 0.26 +0.8 415,916 + MMJJ_RS02190 0.26 +1.4 415,917 - MMJJ_RS02190 0.26 +0.2 415,917 - MMJJ_RS02190 0.26 +3.7 415,918 + MMJJ_RS02190 0.26 +0.9 415,918 + MMJJ_RS02190 0.26 +0.9 415,921 + MMJJ_RS02190 0.27 +1.6 415,939 - MMJJ_RS02190 0.28 +1.5 416,012 + MMJJ_RS02190 0.31 -1.0 416,044 - MMJJ_RS02190 0.33 +1.8 416,079 - MMJJ_RS02190 0.35 +0.2 416,082 - MMJJ_RS02190 0.35 +3.3 416,158 - MMJJ_RS02190 0.39 +1.6 416,159 + MMJJ_RS02190 0.39 +0.7 416,161 + MMJJ_RS02190 0.40 +3.1 416,161 + MMJJ_RS02190 0.40 +1.4 416,161 + MMJJ_RS02190 0.40 +0.2 416,177 - MMJJ_RS02190 0.40 +0.7 416,177 - MMJJ_RS02190 0.40 -0.5 416,177 - MMJJ_RS02190 0.40 +1.0 416,178 + MMJJ_RS02190 0.40 +2.6 416,178 + MMJJ_RS02190 0.40 +2.1 416,182 + MMJJ_RS02190 0.41 +0.3 416,265 + MMJJ_RS02190 0.45 -1.4 416,291 - MMJJ_RS02190 0.47 +0.5 416,291 - MMJJ_RS02190 0.47 +2.9 416,291 - MMJJ_RS02190 0.47 +3.6 416,292 + MMJJ_RS02190 0.47 +2.8 416,292 + MMJJ_RS02190 0.47 +3.7 416,292 + MMJJ_RS02190 0.47 +2.8 416,296 + MMJJ_RS02190 0.47 +1.0 416,296 + MMJJ_RS02190 0.47 -1.3 416,296 + MMJJ_RS02190 0.47 +3.9 416,296 + MMJJ_RS02190 0.47 +3.3 416,298 - MMJJ_RS02190 0.47 +3.5 416,300 - MMJJ_RS02190 0.47 -0.1 416,438 + MMJJ_RS02190 0.55 +3.5 416,528 + MMJJ_RS02190 0.59 +1.1 416,528 + MMJJ_RS02190 0.59 +3.6 416,536 - MMJJ_RS02190 0.60 -1.6 416,537 + MMJJ_RS02190 0.60 +2.6 416,537 + MMJJ_RS02190 0.60 +1.9 416,572 - MMJJ_RS02190 0.62 +0.5 416,583 - MMJJ_RS02190 0.62 +3.5 416,594 + MMJJ_RS02190 0.63 +0.1 416,629 - MMJJ_RS02190 0.65 +2.5 416,635 + MMJJ_RS02190 0.65 +3.7 416,635 + MMJJ_RS02190 0.65 +0.4 416,635 + MMJJ_RS02190 0.65 +3.2 416,652 + MMJJ_RS02190 0.66 +0.9 416,655 - MMJJ_RS02190 0.66 +0.8 416,656 + MMJJ_RS02190 0.66 +1.6 416,659 - MMJJ_RS02190 0.66 +0.3 416,659 - MMJJ_RS02190 0.66 +3.1 416,701 - MMJJ_RS02190 0.69 +0.5 416,726 + MMJJ_RS02190 0.70 +3.3 416,805 - MMJJ_RS02190 0.74 +0.7 416,826 - MMJJ_RS02190 0.75 +2.7 416,826 - MMJJ_RS02190 0.75 +2.2 416,827 + MMJJ_RS02190 0.76 +3.2 416,827 + MMJJ_RS02190 0.76 +1.3 416,827 + MMJJ_RS02190 0.76 +1.5 416,843 + MMJJ_RS02190 0.76 +1.5 416,843 + MMJJ_RS02190 0.76 +0.1 416,935 + MMJJ_RS02190 0.81 +1.6 416,939 + MMJJ_RS02190 0.82 +1.5 417,081 + MMJJ_RS02190 0.89 +3.6 417,155 + +2.6 417,258 - +1.7 417,268 - +2.5 417,272 - +4.6 417,282 - +3.3 417,283 + +2.1 417,292 - +1.8 417,308 + +2.9 417,312 - +1.0 417,312 - -2.1 417,312 - -3.1 417,312 - +0.9 417,312 - -1.1 417,313 + -0.3 417,313 + +0.4 417,313 + -0.2 417,313 + +1.4 417,313 + +1.2 417,366 + -1.1 417,376 + +2.0 417,419 - MMJJ_RS02195 0.11 +0.2 417,434 + MMJJ_RS02195 0.13 +1.0 417,474 - MMJJ_RS02195 0.17 +2.7 417,474 - MMJJ_RS02195 0.17 -1.1 417,474 - MMJJ_RS02195 0.17 +0.8 417,475 + MMJJ_RS02195 0.17 +0.1 417,475 + MMJJ_RS02195 0.17 -0.0 417,475 + MMJJ_RS02195 0.17 +0.8 417,475 + MMJJ_RS02195 0.17 +0.7 417,475 + MMJJ_RS02195 0.17 +0.5 417,475 + MMJJ_RS02195 0.17 +0.7 417,484 + MMJJ_RS02195 0.18 +0.3 417,529 + MMJJ_RS02195 0.22 +0.5 417,537 + MMJJ_RS02195 0.23 +1.6 417,557 - MMJJ_RS02195 0.25 +0.2 417,557 - MMJJ_RS02195 0.25 +0.8 417,557 - MMJJ_RS02195 0.25 +2.9 417,559 - MMJJ_RS02195 0.25 +3.2 417,560 + MMJJ_RS02195 0.25 +1.3 417,658 - MMJJ_RS02195 0.35 +0.3 417,739 + MMJJ_RS02195 0.43 +1.8 417,754 + MMJJ_RS02195 0.44 +1.4 417,783 - MMJJ_RS02195 0.47 +0.2 417,785 - MMJJ_RS02195 0.47 +0.2 417,786 + MMJJ_RS02195 0.47 +3.0 417,839 + MMJJ_RS02195 0.53 +2.2 417,839 + MMJJ_RS02195 0.53 +1.4 417,855 - MMJJ_RS02195 0.54 +0.9 417,856 + MMJJ_RS02195 0.54 +2.5 417,916 + MMJJ_RS02195 0.60 -0.9 417,916 + MMJJ_RS02195 0.60 +1.3 417,930 + MMJJ_RS02195 0.62 +0.1 417,931 - MMJJ_RS02195 0.62 +0.7 417,932 + MMJJ_RS02195 0.62 +2.3 417,936 + MMJJ_RS02195 0.62 +1.3 418,055 - MMJJ_RS02195 0.74 -0.0 418,067 - MMJJ_RS02195 0.75 +3.9 418,068 + MMJJ_RS02195 0.75 +4.1 418,119 - MMJJ_RS02195 0.80 +1.2 418,119 - MMJJ_RS02195 0.80 -0.1 418,119 - MMJJ_RS02195 0.80 +3.3 418,119 - MMJJ_RS02195 0.80 -1.9 418,119 - MMJJ_RS02195 0.80 +0.8 418,120 + MMJJ_RS02195 0.81 +0.7 418,215 - MMJJ_RS02195 0.90 +4.5
Or see this region's nucleotide sequence