Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02170 and MMJJ_RS02175 are separated by 9 nucleotides MMJJ_RS02175 and MMJJ_RS02180 are separated by 75 nucleotides MMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotides MMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotides
MMJJ_RS02170: MMJJ_RS02170 - 2-thiouracil desulfurase family protein, at 412,038 to 412,586
_RS02170
MMJJ_RS02175: MMJJ_RS02175 - imidazoleglycerol-phosphate dehydratase HisB, at 412,596 to 413,168
_RS02175
MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539
_RS02180
MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212
_RS02185
MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279
_RS02190
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 412.285 kb on + strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.287 kb on - strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.288 kb on + strand, within MMJJ_RS02170 at 412.294 kb on + strand, within MMJJ_RS02170 at 412.311 kb on - strand, within MMJJ_RS02170 at 412.314 kb on + strand, within MMJJ_RS02170 at 412.315 kb on - strand, within MMJJ_RS02170 at 412.316 kb on + strand, within MMJJ_RS02170 at 412.316 kb on + strand, within MMJJ_RS02170 at 412.333 kb on + strand, within MMJJ_RS02170 at 412.348 kb on + strand, within MMJJ_RS02170 at 412.396 kb on + strand, within MMJJ_RS02170 at 412.396 kb on + strand, within MMJJ_RS02170 at 412.413 kb on - strand, within MMJJ_RS02170 at 412.473 kb on - strand, within MMJJ_RS02170 at 412.478 kb on + strand, within MMJJ_RS02170 at 412.495 kb on + strand, within MMJJ_RS02170 at 412.543 kb on + strand at 412.717 kb on + strand at 413.196 kb on + strand at 413.196 kb on + strand at 413.198 kb on + strand at 413.200 kb on - strand at 413.200 kb on - strand at 413.200 kb on - strand at 413.201 kb on + strand at 413.222 kb on - strand at 413.223 kb on + strand at 413.246 kb on + strand at 413.541 kb on + strand, within MMJJ_RS02180 at 413.556 kb on - strand, within MMJJ_RS02180 at 413.711 kb on + strand, within MMJJ_RS02180 at 413.737 kb on + strand, within MMJJ_RS02180 at 413.820 kb on - strand, within MMJJ_RS02180 at 413.917 kb on - strand, within MMJJ_RS02180 at 413.920 kb on + strand, within MMJJ_RS02180 at 413.961 kb on + strand, within MMJJ_RS02180 at 414.004 kb on + strand, within MMJJ_RS02180 at 414.008 kb on - strand, within MMJJ_RS02180 at 414.251 kb on - strand, within MMJJ_RS02180 at 414.256 kb on + strand, within MMJJ_RS02180 at 414.263 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.291 kb on - strand, within MMJJ_RS02180 at 414.293 kb on - strand, within MMJJ_RS02180 at 414.385 kb on + strand, within MMJJ_RS02180 at 414.402 kb on - strand, within MMJJ_RS02180 at 414.450 kb on - strand at 414.453 kb on - strand at 414.531 kb on - strand at 414.531 kb on - strand at 414.532 kb on + strand at 414.532 kb on + strand at 414.534 kb on + strand at 414.563 kb on + strand at 414.563 kb on + strand at 414.569 kb on + strand at 414.569 kb on + strand at 414.573 kb on - strand at 414.574 kb on + strand at 414.612 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.614 kb on - strand at 414.695 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand at 414.768 kb on - strand, within MMJJ_RS02185 at 414.768 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.770 kb on - strand, within MMJJ_RS02185 at 414.778 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.917 kb on + strand, within MMJJ_RS02185 at 414.924 kb on - strand, within MMJJ_RS02185 at 414.925 kb on + strand, within MMJJ_RS02185 at 414.960 kb on - strand, within MMJJ_RS02185 at 414.982 kb on - strand, within MMJJ_RS02185 at 414.997 kb on - strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 414.998 kb on + strand, within MMJJ_RS02185 at 415.038 kb on - strand, within MMJJ_RS02185 at 415.068 kb on - strand, within MMJJ_RS02185 at 415.084 kb on - strand, within MMJJ_RS02185 at 415.116 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.145 kb on + strand, within MMJJ_RS02185 at 415.149 kb on + strand, within MMJJ_RS02185 at 415.172 kb on - strand at 415.204 kb on - strand at 415.228 kb on + strand at 415.228 kb on + strand at 415.229 kb on - strand at 415.230 kb on + strand at 415.235 kb on + strand at 415.246 kb on - strand at 415.255 kb on - strand at 415.261 kb on + strand at 415.314 kb on - strand at 415.315 kb on + strand at 415.315 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.347 kb on + strand at 415.361 kb on - strand at 415.375 kb on + strand at 415.378 kb on - strand at 415.378 kb on - strand at 415.379 kb on + strand at 415.439 kb on - strand at 415.513 kb on - strand at 415.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 412,285 + MMJJ_RS02170 0.45 +0.0 412,287 - MMJJ_RS02170 0.45 -1.9 412,287 - MMJJ_RS02170 0.45 -2.3 412,287 - MMJJ_RS02170 0.45 -1.2 412,288 + MMJJ_RS02170 0.46 -1.1 412,288 + MMJJ_RS02170 0.46 -2.9 412,288 + MMJJ_RS02170 0.46 -2.8 412,294 + MMJJ_RS02170 0.47 -0.3 412,311 - MMJJ_RS02170 0.50 -1.2 412,314 + MMJJ_RS02170 0.50 -1.3 412,315 - MMJJ_RS02170 0.50 +3.0 412,316 + MMJJ_RS02170 0.51 +6.6 412,316 + MMJJ_RS02170 0.51 -1.1 412,333 + MMJJ_RS02170 0.54 -1.3 412,348 + MMJJ_RS02170 0.56 -0.3 412,396 + MMJJ_RS02170 0.65 -1.6 412,396 + MMJJ_RS02170 0.65 +1.0 412,413 - MMJJ_RS02170 0.68 -1.9 412,473 - MMJJ_RS02170 0.79 +0.1 412,478 + MMJJ_RS02170 0.80 -2.0 412,495 + MMJJ_RS02170 0.83 +2.8 412,543 + +1.2 412,717 + -0.3 413,196 + -2.9 413,196 + -1.6 413,198 + -1.8 413,200 - -2.1 413,200 - -0.1 413,200 - +2.0 413,201 + -0.8 413,222 - +1.1 413,223 + -1.3 413,246 + -0.2 413,541 + MMJJ_RS02180 0.23 -1.1 413,556 - MMJJ_RS02180 0.24 +0.9 413,711 + MMJJ_RS02180 0.36 +0.7 413,737 + MMJJ_RS02180 0.38 -2.7 413,820 - MMJJ_RS02180 0.44 +0.1 413,917 - MMJJ_RS02180 0.52 -3.3 413,920 + MMJJ_RS02180 0.52 -0.3 413,961 + MMJJ_RS02180 0.55 +0.4 414,004 + MMJJ_RS02180 0.59 +0.2 414,008 - MMJJ_RS02180 0.59 +1.0 414,251 - MMJJ_RS02180 0.78 +4.4 414,256 + MMJJ_RS02180 0.78 +1.2 414,263 - MMJJ_RS02180 0.79 -3.1 414,291 - MMJJ_RS02180 0.81 -0.8 414,291 - MMJJ_RS02180 0.81 +0.7 414,291 - MMJJ_RS02180 0.81 -2.1 414,291 - MMJJ_RS02180 0.81 +0.5 414,293 - MMJJ_RS02180 0.81 -2.0 414,385 + MMJJ_RS02180 0.88 +1.5 414,402 - MMJJ_RS02180 0.89 +0.1 414,450 - +4.1 414,453 - -0.9 414,531 - -1.2 414,531 - +0.2 414,532 + -0.6 414,532 + +2.5 414,534 + -3.1 414,563 + +1.3 414,563 + -1.2 414,569 + -0.3 414,569 + -0.8 414,573 - +0.4 414,574 + -2.7 414,612 - -0.3 414,614 - -0.6 414,614 - +1.2 414,614 - +1.0 414,695 - MMJJ_RS02185 0.15 +2.7 414,768 - -0.8 414,768 - MMJJ_RS02185 0.27 +1.3 414,768 - MMJJ_RS02185 0.27 +0.6 414,770 - MMJJ_RS02185 0.28 +1.9 414,770 - MMJJ_RS02185 0.28 -2.0 414,778 + MMJJ_RS02185 0.29 -2.8 414,917 + MMJJ_RS02185 0.52 +1.4 414,917 + MMJJ_RS02185 0.52 +1.0 414,924 - MMJJ_RS02185 0.53 -2.2 414,925 + MMJJ_RS02185 0.53 +4.2 414,960 - MMJJ_RS02185 0.59 +2.2 414,982 - MMJJ_RS02185 0.62 -0.3 414,997 - MMJJ_RS02185 0.65 -0.7 414,998 + MMJJ_RS02185 0.65 -1.7 414,998 + MMJJ_RS02185 0.65 +1.2 415,038 - MMJJ_RS02185 0.71 +1.1 415,068 - MMJJ_RS02185 0.76 +0.0 415,084 - MMJJ_RS02185 0.79 +0.7 415,116 + MMJJ_RS02185 0.84 +2.2 415,145 + MMJJ_RS02185 0.89 +0.9 415,145 + MMJJ_RS02185 0.89 -0.8 415,149 + MMJJ_RS02185 0.90 -1.0 415,172 - -0.1 415,204 - +3.6 415,228 + +2.1 415,228 + +0.8 415,229 - -1.9 415,230 + -1.3 415,235 + +2.1 415,246 - +1.2 415,255 - +2.7 415,261 + -2.1 415,314 - +2.1 415,315 + +3.4 415,315 + +0.5 415,347 + +2.5 415,347 + +2.6 415,347 + +0.2 415,347 + +0.2 415,361 - -1.3 415,375 + -1.1 415,378 - +1.2 415,378 - +2.5 415,379 + +2.4 415,439 - -1.8 415,513 - +2.3 415,513 - +3.5
Or see this region's nucleotide sequence