Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02115 and MMJJ_RS02120 are separated by 61 nucleotides MMJJ_RS02120 and MMJJ_RS02125 are separated by 118 nucleotides MMJJ_RS02125 and MMJJ_RS02130 are separated by 9 nucleotides MMJJ_RS02130 and MMJJ_RS02135 are separated by 1 nucleotides
MMJJ_RS02115: MMJJ_RS02115 - class I SAM-dependent methyltransferase family protein, at 403,997 to 404,758
_RS02115
MMJJ_RS02120: MMJJ_RS02120 - DJ-1/PfpI family protein, at 404,820 to 405,335
_RS02120
MMJJ_RS02125: MMJJ_RS02125 - hypothetical protein, at 405,454 to 405,750
_RS02125
MMJJ_RS02130: MMJJ_RS02130 - UPF0146 family protein, at 405,760 to 406,173
_RS02130
MMJJ_RS02135: MMJJ_RS02135 - TatD family hydrolase, at 406,175 to 407,017
_RS02135
Position (kb) 405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 404.477 kb on + strand, within MMJJ_RS02115 at 404.480 kb on - strand, within MMJJ_RS02115 at 404.520 kb on + strand, within MMJJ_RS02115 at 404.528 kb on - strand, within MMJJ_RS02115 at 404.529 kb on + strand, within MMJJ_RS02115 at 404.626 kb on - strand, within MMJJ_RS02115 at 404.627 kb on + strand, within MMJJ_RS02115 at 404.627 kb on + strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.629 kb on + strand, within MMJJ_RS02115 at 404.629 kb on + strand, within MMJJ_RS02115 at 404.629 kb on + strand, within MMJJ_RS02115 at 404.632 kb on - strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.636 kb on + strand, within MMJJ_RS02115 at 404.643 kb on + strand, within MMJJ_RS02115 at 404.647 kb on - strand, within MMJJ_RS02115 at 404.647 kb on - strand, within MMJJ_RS02115 at 404.665 kb on - strand, within MMJJ_RS02115 at 404.769 kb on - strand at 404.775 kb on + strand at 404.777 kb on + strand at 404.785 kb on + strand at 404.817 kb on - strand at 404.818 kb on + strand at 404.818 kb on + strand at 404.821 kb on - strand at 404.889 kb on - strand, within MMJJ_RS02120 at 405.062 kb on - strand, within MMJJ_RS02120 at 405.107 kb on + strand, within MMJJ_RS02120 at 405.134 kb on - strand, within MMJJ_RS02120 at 405.138 kb on - strand, within MMJJ_RS02120 at 405.138 kb on - strand, within MMJJ_RS02120 at 405.138 kb on - strand, within MMJJ_RS02120 at 405.139 kb on + strand, within MMJJ_RS02120 at 405.139 kb on + strand, within MMJJ_RS02120 at 405.325 kb on + strand at 405.361 kb on + strand at 405.361 kb on + strand at 405.364 kb on - strand at 405.364 kb on - strand at 405.365 kb on + strand at 405.365 kb on + strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.372 kb on - strand at 405.372 kb on - strand at 405.373 kb on + strand at 405.373 kb on + strand at 405.374 kb on - strand at 405.375 kb on + strand at 405.375 kb on + strand at 405.375 kb on + strand at 405.375 kb on + strand at 405.379 kb on - strand at 405.385 kb on + strand at 405.398 kb on - strand at 405.398 kb on - strand at 405.398 kb on - strand at 405.398 kb on - strand at 405.426 kb on - strand at 405.427 kb on + strand at 405.442 kb on + strand at 405.513 kb on - strand, within MMJJ_RS02125 at 405.513 kb on - strand, within MMJJ_RS02125 at 405.513 kb on - strand, within MMJJ_RS02125 at 405.514 kb on + strand, within MMJJ_RS02125 at 405.583 kb on - strand, within MMJJ_RS02125 at 405.594 kb on - strand, within MMJJ_RS02125 at 405.749 kb on + strand at 405.779 kb on + strand at 405.779 kb on + strand at 405.782 kb on - strand at 405.818 kb on - strand at 405.903 kb on - strand, within MMJJ_RS02130 at 406.172 kb on + strand at 406.231 kb on + strand at 406.294 kb on - strand, within MMJJ_RS02135 at 406.295 kb on + strand, within MMJJ_RS02135 at 406.304 kb on + strand, within MMJJ_RS02135 at 406.315 kb on - strand, within MMJJ_RS02135 at 406.315 kb on - strand, within MMJJ_RS02135 at 406.316 kb on + strand, within MMJJ_RS02135 at 406.357 kb on + strand, within MMJJ_RS02135 at 406.369 kb on + strand, within MMJJ_RS02135 at 406.476 kb on - strand, within MMJJ_RS02135 at 406.476 kb on - strand, within MMJJ_RS02135 at 406.476 kb on - strand, within MMJJ_RS02135 at 406.477 kb on + strand, within MMJJ_RS02135 at 406.477 kb on + strand, within MMJJ_RS02135 at 406.477 kb on + strand, within MMJJ_RS02135 at 406.477 kb on + strand, within MMJJ_RS02135 at 406.501 kb on - strand, within MMJJ_RS02135 at 406.501 kb on - strand, within MMJJ_RS02135 at 406.510 kb on + strand, within MMJJ_RS02135 at 406.510 kb on + strand, within MMJJ_RS02135 at 406.575 kb on - strand, within MMJJ_RS02135 at 406.605 kb on + strand, within MMJJ_RS02135 at 406.628 kb on + strand, within MMJJ_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 404,477 + MMJJ_RS02115 0.63 -1.6 404,480 - MMJJ_RS02115 0.63 +0.2 404,520 + MMJJ_RS02115 0.69 +1.8 404,528 - MMJJ_RS02115 0.70 -0.3 404,529 + MMJJ_RS02115 0.70 +0.6 404,626 - MMJJ_RS02115 0.83 -2.2 404,627 + MMJJ_RS02115 0.83 -0.8 404,627 + MMJJ_RS02115 0.83 -3.6 404,628 - MMJJ_RS02115 0.83 -2.3 404,628 - MMJJ_RS02115 0.83 -0.0 404,628 - MMJJ_RS02115 0.83 +0.4 404,628 - MMJJ_RS02115 0.83 +2.7 404,628 - MMJJ_RS02115 0.83 +1.9 404,628 - MMJJ_RS02115 0.83 +1.1 404,628 - MMJJ_RS02115 0.83 -1.8 404,628 - MMJJ_RS02115 0.83 +0.2 404,628 - MMJJ_RS02115 0.83 -0.8 404,628 - MMJJ_RS02115 0.83 -0.5 404,629 + MMJJ_RS02115 0.83 +1.8 404,629 + MMJJ_RS02115 0.83 -1.7 404,629 + MMJJ_RS02115 0.83 -1.6 404,632 - MMJJ_RS02115 0.83 +2.8 404,633 + MMJJ_RS02115 0.83 +2.9 404,633 + MMJJ_RS02115 0.83 -0.4 404,633 + MMJJ_RS02115 0.83 +4.8 404,633 + MMJJ_RS02115 0.83 +1.8 404,636 + MMJJ_RS02115 0.84 +1.5 404,643 + MMJJ_RS02115 0.85 +2.5 404,647 - MMJJ_RS02115 0.85 -0.3 404,647 - MMJJ_RS02115 0.85 +1.5 404,665 - MMJJ_RS02115 0.88 -1.3 404,769 - +0.7 404,775 + -1.6 404,777 + -1.1 404,785 + +0.1 404,817 - +1.0 404,818 + +1.2 404,818 + -0.8 404,821 - +1.6 404,889 - MMJJ_RS02120 0.13 -0.8 405,062 - MMJJ_RS02120 0.47 +5.7 405,107 + MMJJ_RS02120 0.56 +2.0 405,134 - MMJJ_RS02120 0.61 +2.3 405,138 - MMJJ_RS02120 0.62 -2.7 405,138 - MMJJ_RS02120 0.62 +2.5 405,138 - MMJJ_RS02120 0.62 -3.4 405,139 + MMJJ_RS02120 0.62 +2.8 405,139 + MMJJ_RS02120 0.62 -2.2 405,325 + +0.9 405,361 + +1.2 405,361 + +2.1 405,364 - -2.7 405,364 - -1.1 405,365 + +4.4 405,365 + -0.8 405,370 - +0.8 405,370 - -2.6 405,370 - -2.6 405,370 - +0.8 405,370 - +2.0 405,370 - +3.5 405,370 - -1.3 405,370 - -1.9 405,370 - -2.2 405,370 - -1.6 405,370 - -1.8 405,370 - -0.3 405,370 - +1.1 405,371 + -2.0 405,371 + -0.3 405,371 + +2.7 405,371 + -2.7 405,371 + +1.3 405,371 + -0.4 405,371 + +2.1 405,371 + +0.8 405,371 + +1.1 405,371 + +2.7 405,371 + -0.8 405,371 + -1.1 405,371 + -2.2 405,371 + +0.6 405,371 + -0.3 405,371 + -1.8 405,371 + +3.9 405,371 + -0.5 405,372 - -1.9 405,372 - -3.1 405,373 + -2.2 405,373 + +2.5 405,374 - -0.7 405,375 + +1.7 405,375 + +0.4 405,375 + -2.7 405,375 + -0.9 405,379 - -2.6 405,385 + +1.2 405,398 - +1.4 405,398 - +0.7 405,398 - -0.1 405,398 - +1.3 405,426 - +3.5 405,427 + -0.6 405,442 + -0.5 405,513 - MMJJ_RS02125 0.20 +3.3 405,513 - MMJJ_RS02125 0.20 -1.8 405,513 - MMJJ_RS02125 0.20 +1.5 405,514 + MMJJ_RS02125 0.20 +0.9 405,583 - MMJJ_RS02125 0.43 -1.5 405,594 - MMJJ_RS02125 0.47 -0.8 405,749 + +0.2 405,779 + -3.0 405,779 + -0.8 405,782 - +0.2 405,818 - +0.2 405,903 - MMJJ_RS02130 0.35 -0.3 406,172 + +1.0 406,231 + -2.2 406,294 - MMJJ_RS02135 0.14 +2.5 406,295 + MMJJ_RS02135 0.14 +1.4 406,304 + MMJJ_RS02135 0.15 +2.7 406,315 - MMJJ_RS02135 0.17 -0.2 406,315 - MMJJ_RS02135 0.17 +1.9 406,316 + MMJJ_RS02135 0.17 -1.2 406,357 + MMJJ_RS02135 0.22 -1.8 406,369 + MMJJ_RS02135 0.23 +0.4 406,476 - MMJJ_RS02135 0.36 -2.9 406,476 - MMJJ_RS02135 0.36 +2.9 406,476 - MMJJ_RS02135 0.36 +1.9 406,477 + MMJJ_RS02135 0.36 -2.1 406,477 + MMJJ_RS02135 0.36 +1.1 406,477 + MMJJ_RS02135 0.36 -2.3 406,477 + MMJJ_RS02135 0.36 +0.3 406,501 - MMJJ_RS02135 0.39 -0.5 406,501 - MMJJ_RS02135 0.39 +1.0 406,510 + MMJJ_RS02135 0.40 +4.3 406,510 + MMJJ_RS02135 0.40 -2.8 406,575 - MMJJ_RS02135 0.47 -4.3 406,605 + MMJJ_RS02135 0.51 -1.6 406,628 + MMJJ_RS02135 0.54 -0.3
Or see this region's nucleotide sequence