Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02115

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
403,003	-				-1.7
403,005	-				-2.6
403,006	+				+0.6
403,006	+				+0.3
403,011	+				-3.6
403,019	-				+0.0
403,019	-				-1.9
403,020	+				+2.5
403,029	+				-0.3
403,050	-				+1.4
403,068	+				-3.0
403,101	-				-0.5
403,101	-				+1.7
403,122	-				+0.3
403,153	+				+0.3
403,157	-				+1.4
403,159	-				+0.3
403,159	-				+4.1
403,160	+				-1.7
403,161	-				-0.7
403,162	+				-1.1
403,176	-				+0.6
403,195	-				+2.0
403,199	-				+3.1
403,205	-				-0.5
403,206	+				-0.2
403,210	+				+1.9
403,210	+				-0.0
403,210	+				+2.7
403,210	+				-1.4
403,210	+				+0.5
403,210	+				+4.6
403,211	-				+2.1
403,222	+				+2.2
403,254	+				+1.3
403,299	-				+1.3
403,299	-				+3.5
403,300	+				-2.3
403,300	+				-0.6
403,301	-				-0.5
403,301	-				+0.8
403,357	-				-0.7
403,360	+				-3.6
403,362	+				+4.3
403,373	-				-0.5
403,437	+				+2.0
403,453	+				-1.7
403,464	-				-2.4
403,464	-				+0.3
403,474	+				-0.5
403,474	+				+0.8
403,478	-				-1.1
403,478	-				+2.1
403,479	+				-2.3
403,484	+				-1.2
403,518	-				-2.1
403,523	-				+0.3
403,530	+				+1.6
403,538	-				+0.3
403,538	-				-3.5
403,538	-				-1.7
403,538	-				-1.5
403,539	+				-1.9
403,539	+				+2.2
403,539	+				+3.6
403,545	-				+1.2
403,545	-				-2.5
403,546	+				-2.3
403,548	+				-1.2
403,550	-				-1.9
403,551	+				+2.5
403,551	+				+0.3
403,551	+				+1.3
403,595	+		MMJJ_RS02110	0.10	-0.7
403,710	-		MMJJ_RS02110	0.37	+0.1
403,710	-		MMJJ_RS02110	0.37	+0.3
403,711	+		MMJJ_RS02110	0.37	+1.1
403,719	+		MMJJ_RS02110	0.39	+1.2
403,748	-		MMJJ_RS02110	0.45	+0.6
403,809	+		MMJJ_RS02110	0.59	-0.3
403,823	+		MMJJ_RS02110	0.63	-3.4
403,871	-		MMJJ_RS02110	0.74	-0.9
403,872	+		MMJJ_RS02110	0.74	+1.5
403,920	+		MMJJ_RS02110	0.85	-1.3
403,928	+		MMJJ_RS02110	0.87	+2.7
403,950	+				-1.8
404,024	-				+1.1
404,024	-				+2.4
404,050	+				-1.1
404,066	+				-1.3
404,072	+				+1.8
404,072	+				-2.0
404,074	+		MMJJ_RS02115	0.10	+2.8
404,191	-		MMJJ_RS02115	0.25	-1.9
404,324	-		MMJJ_RS02115	0.43	+1.1
404,379	-		MMJJ_RS02115	0.50	+1.5
404,380	+		MMJJ_RS02115	0.50	-0.1
404,444	+		MMJJ_RS02115	0.59	+1.7
404,450	-		MMJJ_RS02115	0.59	+1.2
404,451	+		MMJJ_RS02115	0.60	-2.2
404,477	+		MMJJ_RS02115	0.63	-1.6
404,480	-		MMJJ_RS02115	0.63	+0.2
404,520	+		MMJJ_RS02115	0.69	+1.8
404,528	-		MMJJ_RS02115	0.70	-0.3
404,529	+		MMJJ_RS02115	0.70	+0.6
404,626	-		MMJJ_RS02115	0.83	-2.2
404,627	+		MMJJ_RS02115	0.83	-0.8
404,627	+		MMJJ_RS02115	0.83	-3.6
404,628	-		MMJJ_RS02115	0.83	-2.3
404,628	-		MMJJ_RS02115	0.83	-0.0
404,628	-		MMJJ_RS02115	0.83	+0.4
404,628	-		MMJJ_RS02115	0.83	+2.7
404,628	-		MMJJ_RS02115	0.83	+1.9
404,628	-		MMJJ_RS02115	0.83	+1.1
404,628	-		MMJJ_RS02115	0.83	-1.8
404,628	-		MMJJ_RS02115	0.83	+0.2
404,628	-		MMJJ_RS02115	0.83	-0.8
404,628	-		MMJJ_RS02115	0.83	-0.5
404,629	+		MMJJ_RS02115	0.83	+1.8
404,629	+		MMJJ_RS02115	0.83	-1.7
404,629	+		MMJJ_RS02115	0.83	-1.6
404,632	-		MMJJ_RS02115	0.83	+2.8
404,633	+		MMJJ_RS02115	0.83	+2.9
404,633	+		MMJJ_RS02115	0.83	-0.4
404,633	+		MMJJ_RS02115	0.83	+4.8
404,633	+		MMJJ_RS02115	0.83	+1.8
404,636	+		MMJJ_RS02115	0.84	+1.5
404,643	+		MMJJ_RS02115	0.85	+2.5
404,647	-		MMJJ_RS02115	0.85	-0.3
404,647	-		MMJJ_RS02115	0.85	+1.5
404,665	-		MMJJ_RS02115	0.88	-1.3
404,769	-				+0.7
404,775	+				-1.6
404,777	+				-1.1
404,785	+				+0.1
404,817	-				+1.0
404,818	+				+1.2
404,818	+				-0.8
404,821	-				+1.6
404,889	-		MMJJ_RS02120	0.13	-0.8
405,062	-		MMJJ_RS02120	0.47	+5.7
405,107	+		MMJJ_RS02120	0.56	+2.0
405,134	-		MMJJ_RS02120	0.61	+2.3
405,138	-		MMJJ_RS02120	0.62	-2.7
405,138	-		MMJJ_RS02120	0.62	+2.5
405,138	-		MMJJ_RS02120	0.62	-3.4
405,139	+		MMJJ_RS02120	0.62	+2.8
405,139	+		MMJJ_RS02120	0.62	-2.2
405,325	+				+0.9
405,361	+				+1.2
405,361	+				+2.1
405,364	-				-2.7
405,364	-				-1.1
405,365	+				+4.4
405,365	+				-0.8
405,370	-				+0.8
405,370	-				-2.6
405,370	-				-2.6
405,370	-				+0.8
405,370	-				+2.0
405,370	-				+3.5
405,370	-				-1.3
405,370	-				-1.9
405,370	-				-2.2
405,370	-				-1.6
405,370	-				-1.8
405,370	-				-0.3
405,370	-				+1.1
405,371	+				-2.0
405,371	+				-0.3
405,371	+				+2.7
405,371	+				-2.7
405,371	+				+1.3
405,371	+				-0.4
405,371	+				+2.1
405,371	+				+0.8
405,371	+				+1.1
405,371	+				+2.7
405,371	+				-0.8
405,371	+				-1.1
405,371	+				-2.2
405,371	+				+0.6
405,371	+				-0.3
405,371	+				-1.8
405,371	+				+3.9
405,371	+				-0.5
405,372	-				-1.9
405,372	-				-3.1
405,373	+				-2.2
405,373	+				+2.5
405,374	-				-0.7
405,375	+				+1.7
405,375	+				+0.4
405,375	+				-2.7
405,375	+				-0.9
405,379	-				-2.6
405,385	+				+1.2
405,398	-				+1.4
405,398	-				+0.7
405,398	-				-0.1
405,398	-				+1.3
405,426	-				+3.5
405,427	+				-0.6
405,442	+				-0.5
405,513	-		MMJJ_RS02125	0.20	+3.3
405,513	-		MMJJ_RS02125	0.20	-1.8
405,513	-		MMJJ_RS02125	0.20	+1.5
405,514	+		MMJJ_RS02125	0.20	+0.9
405,583	-		MMJJ_RS02125	0.43	-1.5
405,594	-		MMJJ_RS02125	0.47	-0.8
405,749	+				+0.2