Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02090 and MMJJ_RS02095 are separated by 64 nucleotides MMJJ_RS02095 and MMJJ_RS02100 are separated by 151 nucleotides MMJJ_RS02100 and MMJJ_RS02105 are separated by 59 nucleotides
MMJJ_RS02090: MMJJ_RS02090 - tyramine--L-glutamate ligase, at 398,168 to 399,076
_RS02090
MMJJ_RS02095: MMJJ_RS02095 - DUF2124 family protein, at 399,141 to 399,623
_RS02095
MMJJ_RS02100: MMJJ_RS02100 - hypothetical protein, at 399,775 to 400,065
_RS02100
MMJJ_RS02105: MMJJ_RS02105 - right-handed parallel beta-helix repeat-containing protein, at 400,125 to 403,277
_RS02105
Position (kb) 399
400
401 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 398.795 kb on + strand, within MMJJ_RS02090 at 398.804 kb on + strand, within MMJJ_RS02090 at 398.845 kb on - strand, within MMJJ_RS02090 at 398.916 kb on - strand, within MMJJ_RS02090 at 399.100 kb on + strand at 399.109 kb on + strand at 399.113 kb on - strand at 399.113 kb on - strand at 399.152 kb on + strand at 399.192 kb on + strand, within MMJJ_RS02095 at 399.226 kb on - strand, within MMJJ_RS02095 at 399.288 kb on + strand, within MMJJ_RS02095 at 399.309 kb on - strand, within MMJJ_RS02095 at 399.310 kb on + strand, within MMJJ_RS02095 at 399.314 kb on - strand, within MMJJ_RS02095 at 399.314 kb on - strand, within MMJJ_RS02095 at 399.357 kb on + strand, within MMJJ_RS02095 at 399.357 kb on + strand, within MMJJ_RS02095 at 399.408 kb on + strand, within MMJJ_RS02095 at 399.475 kb on - strand, within MMJJ_RS02095 at 399.484 kb on - strand, within MMJJ_RS02095 at 399.489 kb on + strand, within MMJJ_RS02095 at 399.515 kb on + strand, within MMJJ_RS02095 at 399.515 kb on + strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.521 kb on + strand, within MMJJ_RS02095 at 399.535 kb on - strand, within MMJJ_RS02095 at 399.576 kb on + strand at 399.580 kb on - strand at 399.584 kb on + strand at 399.584 kb on + strand at 399.625 kb on - strand at 399.654 kb on + strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.712 kb on + strand at 399.716 kb on + strand at 399.716 kb on + strand at 399.737 kb on + strand at 399.741 kb on + strand at 399.741 kb on + strand at 399.742 kb on - strand at 399.742 kb on - strand at 399.742 kb on - strand at 399.743 kb on + strand at 399.804 kb on + strand, within MMJJ_RS02100 at 399.817 kb on - strand, within MMJJ_RS02100 at 399.817 kb on - strand, within MMJJ_RS02100 at 399.822 kb on - strand, within MMJJ_RS02100 at 399.822 kb on - strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.824 kb on - strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.912 kb on + strand, within MMJJ_RS02100 at 399.954 kb on + strand, within MMJJ_RS02100 at 399.961 kb on - strand, within MMJJ_RS02100 at 399.962 kb on + strand, within MMJJ_RS02100 at 399.962 kb on + strand, within MMJJ_RS02100 at 399.965 kb on + strand, within MMJJ_RS02100 at 399.965 kb on + strand, within MMJJ_RS02100 at 399.987 kb on - strand, within MMJJ_RS02100 at 399.993 kb on + strand, within MMJJ_RS02100 at 400.022 kb on + strand, within MMJJ_RS02100 at 400.022 kb on + strand, within MMJJ_RS02100 at 400.210 kb on + strand at 400.247 kb on - strand at 400.247 kb on - strand at 400.247 kb on - strand at 400.247 kb on - strand at 400.248 kb on + strand at 400.248 kb on + strand at 400.248 kb on + strand at 400.248 kb on + strand at 400.249 kb on - strand at 400.249 kb on - strand at 400.249 kb on - strand at 400.249 kb on - strand at 400.251 kb on - strand at 400.252 kb on + strand at 400.252 kb on + strand at 400.300 kb on + strand at 400.370 kb on + strand at 400.462 kb on + strand, within MMJJ_RS02105 at 400.499 kb on + strand, within MMJJ_RS02105 at 400.499 kb on + strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.533 kb on - strand, within MMJJ_RS02105 at 400.687 kb on - strand, within MMJJ_RS02105 at 400.687 kb on - strand, within MMJJ_RS02105 at 400.687 kb on - strand, within MMJJ_RS02105 at 400.690 kb on - strand, within MMJJ_RS02105 at 400.690 kb on - strand, within MMJJ_RS02105 at 400.702 kb on - strand, within MMJJ_RS02105 at 400.702 kb on - strand, within MMJJ_RS02105 at 400.703 kb on + strand, within MMJJ_RS02105 at 400.703 kb on + strand, within MMJJ_RS02105 at 400.703 kb on + strand, within MMJJ_RS02105 at 400.727 kb on + strand, within MMJJ_RS02105 at 400.732 kb on - strand, within MMJJ_RS02105 at 400.732 kb on - strand, within MMJJ_RS02105 at 400.733 kb on + strand, within MMJJ_RS02105 at 400.733 kb on + strand, within MMJJ_RS02105 at 400.735 kb on - strand, within MMJJ_RS02105 at 400.735 kb on - strand, within MMJJ_RS02105 at 400.736 kb on + strand, within MMJJ_RS02105 at 400.736 kb on + strand, within MMJJ_RS02105 at 400.736 kb on + strand, within MMJJ_RS02105 at 400.736 kb on + strand, within MMJJ_RS02105 at 400.736 kb on + strand, within MMJJ_RS02105 at 400.789 kb on - strand, within MMJJ_RS02105 at 400.790 kb on + strand, within MMJJ_RS02105 at 400.810 kb on - strand, within MMJJ_RS02105 at 400.810 kb on - strand, within MMJJ_RS02105 at 400.825 kb on - strand, within MMJJ_RS02105 at 400.825 kb on - strand, within MMJJ_RS02105 at 400.829 kb on - strand, within MMJJ_RS02105 at 400.829 kb on - strand, within MMJJ_RS02105 at 400.852 kb on + strand, within MMJJ_RS02105 at 400.854 kb on - strand, within MMJJ_RS02105 at 400.855 kb on + strand, within MMJJ_RS02105 at 400.895 kb on - strand, within MMJJ_RS02105 at 400.896 kb on + strand, within MMJJ_RS02105 at 400.896 kb on + strand at 400.929 kb on - strand, within MMJJ_RS02105 at 400.937 kb on - strand, within MMJJ_RS02105 at 400.940 kb on - strand, within MMJJ_RS02105 at 400.940 kb on - strand, within MMJJ_RS02105 at 400.952 kb on - strand, within MMJJ_RS02105 at 400.956 kb on + strand, within MMJJ_RS02105 at 400.968 kb on + strand, within MMJJ_RS02105 at 401.007 kb on + strand, within MMJJ_RS02105 at 401.051 kb on - strand, within MMJJ_RS02105 at 401.052 kb on + strand, within MMJJ_RS02105
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 398,795 + MMJJ_RS02090 0.69 +0.2 398,804 + MMJJ_RS02090 0.70 -1.8 398,845 - MMJJ_RS02090 0.74 -1.8 398,916 - MMJJ_RS02090 0.82 -1.1 399,100 + +1.4 399,109 + -0.3 399,113 - +2.7 399,113 - +0.7 399,152 + -1.1 399,192 + MMJJ_RS02095 0.11 -1.1 399,226 - MMJJ_RS02095 0.18 -0.9 399,288 + MMJJ_RS02095 0.30 -2.9 399,309 - MMJJ_RS02095 0.35 -1.0 399,310 + MMJJ_RS02095 0.35 -0.8 399,314 - MMJJ_RS02095 0.36 +0.0 399,314 - MMJJ_RS02095 0.36 +2.3 399,357 + MMJJ_RS02095 0.45 +2.1 399,357 + MMJJ_RS02095 0.45 -2.5 399,408 + MMJJ_RS02095 0.55 +0.5 399,475 - MMJJ_RS02095 0.69 +1.2 399,484 - MMJJ_RS02095 0.71 -2.8 399,489 + MMJJ_RS02095 0.72 -0.3 399,515 + MMJJ_RS02095 0.77 -0.3 399,515 + MMJJ_RS02095 0.77 +1.2 399,520 - MMJJ_RS02095 0.78 +0.4 399,520 - MMJJ_RS02095 0.78 +3.7 399,520 - MMJJ_RS02095 0.78 +4.6 399,521 + MMJJ_RS02095 0.79 -3.6 399,535 - MMJJ_RS02095 0.82 +1.0 399,576 + -2.3 399,580 - +1.7 399,584 + +1.3 399,584 + -0.3 399,625 - -0.0 399,654 + -0.9 399,711 - +1.1 399,711 - -0.8 399,711 - +0.7 399,711 - -1.6 399,711 - -0.5 399,712 + -0.3 399,716 + -0.3 399,716 + -0.3 399,737 + +1.9 399,741 + -1.0 399,741 + -1.3 399,742 - +1.4 399,742 - +1.9 399,742 - -1.0 399,743 + -1.8 399,804 + MMJJ_RS02100 0.10 -0.6 399,817 - MMJJ_RS02100 0.14 +1.4 399,817 - MMJJ_RS02100 0.14 +2.9 399,822 - MMJJ_RS02100 0.16 +2.1 399,822 - MMJJ_RS02100 0.16 +2.0 399,823 + MMJJ_RS02100 0.16 +0.1 399,823 + MMJJ_RS02100 0.16 +0.9 399,823 + MMJJ_RS02100 0.16 +0.4 399,824 - MMJJ_RS02100 0.17 -2.3 399,825 + MMJJ_RS02100 0.17 -3.2 399,825 + MMJJ_RS02100 0.17 +0.2 399,825 + MMJJ_RS02100 0.17 -2.0 399,825 + MMJJ_RS02100 0.17 -0.2 399,825 + MMJJ_RS02100 0.17 +2.5 399,912 + MMJJ_RS02100 0.47 +5.0 399,954 + MMJJ_RS02100 0.62 +1.3 399,961 - MMJJ_RS02100 0.64 +1.1 399,962 + MMJJ_RS02100 0.64 +0.3 399,962 + MMJJ_RS02100 0.64 +4.1 399,965 + MMJJ_RS02100 0.65 +1.8 399,965 + MMJJ_RS02100 0.65 -1.8 399,987 - MMJJ_RS02100 0.73 -2.4 399,993 + MMJJ_RS02100 0.75 +1.5 400,022 + MMJJ_RS02100 0.85 -4.8 400,022 + MMJJ_RS02100 0.85 -0.8 400,210 + +1.7 400,247 - -3.3 400,247 - -1.3 400,247 - -3.4 400,247 - +4.6 400,248 + -0.6 400,248 + -2.3 400,248 + +3.6 400,248 + -0.1 400,249 - +1.0 400,249 - -1.7 400,249 - +1.4 400,249 - -0.7 400,251 - +0.6 400,252 + +0.7 400,252 + -1.2 400,300 + -3.0 400,370 + -0.3 400,462 + MMJJ_RS02105 0.11 -2.3 400,499 + MMJJ_RS02105 0.12 -3.5 400,499 + MMJJ_RS02105 0.12 +0.2 400,500 - MMJJ_RS02105 0.12 +0.6 400,500 - MMJJ_RS02105 0.12 +1.2 400,500 - MMJJ_RS02105 0.12 +0.2 400,500 - MMJJ_RS02105 0.12 +3.6 400,500 - MMJJ_RS02105 0.12 +2.5 400,501 + MMJJ_RS02105 0.12 +3.0 400,501 + MMJJ_RS02105 0.12 -0.4 400,501 + MMJJ_RS02105 0.12 -0.8 400,501 + MMJJ_RS02105 0.12 +0.3 400,501 + MMJJ_RS02105 0.12 +0.6 400,503 + MMJJ_RS02105 0.12 -2.1 400,503 + MMJJ_RS02105 0.12 -2.8 400,503 + MMJJ_RS02105 0.12 -2.2 400,503 + MMJJ_RS02105 0.12 -1.6 400,503 + MMJJ_RS02105 0.12 +2.1 400,533 - MMJJ_RS02105 0.13 +2.2 400,687 - MMJJ_RS02105 0.18 +1.3 400,687 - MMJJ_RS02105 0.18 -1.3 400,687 - MMJJ_RS02105 0.18 -0.5 400,690 - MMJJ_RS02105 0.18 -1.7 400,690 - MMJJ_RS02105 0.18 -0.3 400,702 - MMJJ_RS02105 0.18 -0.4 400,702 - MMJJ_RS02105 0.18 -0.8 400,703 + MMJJ_RS02105 0.18 -1.6 400,703 + MMJJ_RS02105 0.18 +0.7 400,703 + MMJJ_RS02105 0.18 +0.8 400,727 + MMJJ_RS02105 0.19 -1.1 400,732 - MMJJ_RS02105 0.19 -2.1 400,732 - MMJJ_RS02105 0.19 +1.4 400,733 + MMJJ_RS02105 0.19 +2.2 400,733 + MMJJ_RS02105 0.19 +2.0 400,735 - MMJJ_RS02105 0.19 -0.1 400,735 - MMJJ_RS02105 0.19 +0.6 400,736 + MMJJ_RS02105 0.19 +1.5 400,736 + MMJJ_RS02105 0.19 +0.8 400,736 + MMJJ_RS02105 0.19 -0.6 400,736 + MMJJ_RS02105 0.19 -0.9 400,736 + MMJJ_RS02105 0.19 +1.0 400,789 - MMJJ_RS02105 0.21 +1.2 400,790 + MMJJ_RS02105 0.21 -1.5 400,810 - MMJJ_RS02105 0.22 +1.3 400,810 - MMJJ_RS02105 0.22 -1.7 400,825 - MMJJ_RS02105 0.22 +0.8 400,825 - MMJJ_RS02105 0.22 -0.3 400,829 - MMJJ_RS02105 0.22 +4.3 400,829 - MMJJ_RS02105 0.22 +1.1 400,852 + MMJJ_RS02105 0.23 -1.5 400,854 - MMJJ_RS02105 0.23 +2.4 400,855 + MMJJ_RS02105 0.23 +3.4 400,895 - MMJJ_RS02105 0.24 +1.8 400,896 + MMJJ_RS02105 0.24 -1.5 400,896 + -0.3 400,929 - MMJJ_RS02105 0.25 -1.1 400,937 - MMJJ_RS02105 0.26 -0.3 400,940 - MMJJ_RS02105 0.26 +0.7 400,940 - MMJJ_RS02105 0.26 -1.2 400,952 - MMJJ_RS02105 0.26 -0.2 400,956 + MMJJ_RS02105 0.26 -0.7 400,968 + MMJJ_RS02105 0.27 +2.5 401,007 + MMJJ_RS02105 0.28 +1.5 401,051 - MMJJ_RS02105 0.29 +4.7 401,052 + MMJJ_RS02105 0.29 -0.8
Or see this region's nucleotide sequence