Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02080 and MMJJ_RS02085 are separated by 41 nucleotides MMJJ_RS02085 and MMJJ_RS02090 are separated by 19 nucleotides MMJJ_RS02090 and MMJJ_RS02095 are separated by 64 nucleotides MMJJ_RS02095 and MMJJ_RS02100 are separated by 151 nucleotides
MMJJ_RS02080: MMJJ_RS02080 - AMP-binding protein, at 395,534 to 397,183
_RS02080
MMJJ_RS02085: MMJJ_RS02085 - hypothetical protein, at 397,225 to 398,148
_RS02085
MMJJ_RS02090: MMJJ_RS02090 - tyramine--L-glutamate ligase, at 398,168 to 399,076
_RS02090
MMJJ_RS02095: MMJJ_RS02095 - DUF2124 family protein, at 399,141 to 399,623
_RS02095
MMJJ_RS02100: MMJJ_RS02100 - hypothetical protein, at 399,775 to 400,065
_RS02100
Position (kb) 398
399
400 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 397.180 kb on + strand at 397.181 kb on - strand at 397.181 kb on - strand at 397.182 kb on + strand at 397.182 kb on + strand at 397.182 kb on + strand at 397.186 kb on - strand at 397.213 kb on + strand at 397.213 kb on + strand at 397.224 kb on - strand at 397.224 kb on - strand at 397.225 kb on + strand at 397.232 kb on + strand at 397.277 kb on - strand at 397.278 kb on + strand at 397.278 kb on + strand at 397.289 kb on - strand at 397.289 kb on - strand at 397.312 kb on + strand at 397.386 kb on + strand, within MMJJ_RS02085 at 397.387 kb on - strand, within MMJJ_RS02085 at 397.387 kb on - strand, within MMJJ_RS02085 at 397.388 kb on + strand, within MMJJ_RS02085 at 397.388 kb on + strand, within MMJJ_RS02085 at 397.388 kb on + strand, within MMJJ_RS02085 at 397.388 kb on + strand, within MMJJ_RS02085 at 397.389 kb on - strand, within MMJJ_RS02085 at 397.389 kb on - strand, within MMJJ_RS02085 at 397.390 kb on + strand, within MMJJ_RS02085 at 397.390 kb on + strand, within MMJJ_RS02085 at 397.390 kb on + strand, within MMJJ_RS02085 at 397.418 kb on - strand, within MMJJ_RS02085 at 397.418 kb on - strand, within MMJJ_RS02085 at 397.422 kb on + strand, within MMJJ_RS02085 at 397.451 kb on - strand, within MMJJ_RS02085 at 397.507 kb on - strand, within MMJJ_RS02085 at 397.507 kb on - strand, within MMJJ_RS02085 at 397.508 kb on + strand, within MMJJ_RS02085 at 397.516 kb on + strand, within MMJJ_RS02085 at 397.560 kb on + strand, within MMJJ_RS02085 at 397.578 kb on - strand, within MMJJ_RS02085 at 397.609 kb on + strand, within MMJJ_RS02085 at 397.610 kb on - strand, within MMJJ_RS02085 at 397.610 kb on - strand, within MMJJ_RS02085 at 397.611 kb on + strand, within MMJJ_RS02085 at 397.611 kb on + strand, within MMJJ_RS02085 at 397.611 kb on + strand, within MMJJ_RS02085 at 397.622 kb on + strand, within MMJJ_RS02085 at 397.646 kb on - strand, within MMJJ_RS02085 at 397.647 kb on + strand, within MMJJ_RS02085 at 397.697 kb on - strand, within MMJJ_RS02085 at 397.698 kb on + strand, within MMJJ_RS02085 at 397.707 kb on - strand, within MMJJ_RS02085 at 397.781 kb on - strand, within MMJJ_RS02085 at 397.833 kb on + strand, within MMJJ_RS02085 at 397.864 kb on - strand, within MMJJ_RS02085 at 397.864 kb on - strand, within MMJJ_RS02085 at 397.864 kb on - strand, within MMJJ_RS02085 at 397.864 kb on - strand, within MMJJ_RS02085 at 397.865 kb on + strand, within MMJJ_RS02085 at 397.892 kb on - strand, within MMJJ_RS02085 at 397.892 kb on - strand, within MMJJ_RS02085 at 397.896 kb on + strand, within MMJJ_RS02085 at 397.907 kb on - strand, within MMJJ_RS02085 at 397.907 kb on - strand, within MMJJ_RS02085 at 397.943 kb on - strand, within MMJJ_RS02085 at 397.943 kb on - strand, within MMJJ_RS02085 at 397.947 kb on + strand, within MMJJ_RS02085 at 397.971 kb on - strand, within MMJJ_RS02085 at 397.971 kb on - strand, within MMJJ_RS02085 at 397.971 kb on - strand, within MMJJ_RS02085 at 397.971 kb on - strand, within MMJJ_RS02085 at 397.999 kb on + strand, within MMJJ_RS02085 at 398.007 kb on + strand, within MMJJ_RS02085 at 398.034 kb on - strand, within MMJJ_RS02085 at 398.034 kb on - strand, within MMJJ_RS02085 at 398.048 kb on - strand, within MMJJ_RS02085 at 398.110 kb on + strand at 398.184 kb on - strand at 398.261 kb on + strand, within MMJJ_RS02090 at 398.268 kb on - strand, within MMJJ_RS02090 at 398.374 kb on + strand, within MMJJ_RS02090 at 398.458 kb on + strand, within MMJJ_RS02090 at 398.463 kb on + strand, within MMJJ_RS02090 at 398.479 kb on + strand, within MMJJ_RS02090 at 398.527 kb on + strand, within MMJJ_RS02090 at 398.556 kb on + strand, within MMJJ_RS02090 at 398.667 kb on + strand, within MMJJ_RS02090 at 398.752 kb on - strand, within MMJJ_RS02090 at 398.753 kb on + strand at 398.795 kb on + strand, within MMJJ_RS02090 at 398.804 kb on + strand, within MMJJ_RS02090 at 398.845 kb on - strand, within MMJJ_RS02090 at 398.916 kb on - strand, within MMJJ_RS02090 at 399.100 kb on + strand at 399.109 kb on + strand at 399.113 kb on - strand at 399.113 kb on - strand at 399.152 kb on + strand at 399.192 kb on + strand, within MMJJ_RS02095 at 399.226 kb on - strand, within MMJJ_RS02095 at 399.288 kb on + strand, within MMJJ_RS02095 at 399.309 kb on - strand, within MMJJ_RS02095 at 399.310 kb on + strand, within MMJJ_RS02095 at 399.314 kb on - strand, within MMJJ_RS02095 at 399.314 kb on - strand, within MMJJ_RS02095 at 399.357 kb on + strand, within MMJJ_RS02095 at 399.357 kb on + strand, within MMJJ_RS02095 at 399.408 kb on + strand, within MMJJ_RS02095 at 399.475 kb on - strand, within MMJJ_RS02095 at 399.484 kb on - strand, within MMJJ_RS02095 at 399.489 kb on + strand, within MMJJ_RS02095 at 399.515 kb on + strand, within MMJJ_RS02095 at 399.515 kb on + strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.521 kb on + strand, within MMJJ_RS02095 at 399.535 kb on - strand, within MMJJ_RS02095 at 399.576 kb on + strand at 399.580 kb on - strand at 399.584 kb on + strand at 399.584 kb on + strand at 399.625 kb on - strand at 399.654 kb on + strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.712 kb on + strand at 399.716 kb on + strand at 399.716 kb on + strand at 399.737 kb on + strand at 399.741 kb on + strand at 399.741 kb on + strand at 399.742 kb on - strand at 399.742 kb on - strand at 399.742 kb on - strand at 399.743 kb on + strand at 399.804 kb on + strand, within MMJJ_RS02100 at 399.817 kb on - strand, within MMJJ_RS02100 at 399.817 kb on - strand, within MMJJ_RS02100 at 399.822 kb on - strand, within MMJJ_RS02100 at 399.822 kb on - strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.824 kb on - strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.912 kb on + strand, within MMJJ_RS02100 at 399.954 kb on + strand, within MMJJ_RS02100 at 399.961 kb on - strand, within MMJJ_RS02100 at 399.962 kb on + strand, within MMJJ_RS02100 at 399.962 kb on + strand, within MMJJ_RS02100 at 399.965 kb on + strand, within MMJJ_RS02100 at 399.965 kb on + strand, within MMJJ_RS02100 at 399.987 kb on - strand, within MMJJ_RS02100 at 399.993 kb on + strand, within MMJJ_RS02100 at 400.022 kb on + strand, within MMJJ_RS02100 at 400.022 kb on + strand, within MMJJ_RS02100
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 397,180 + +1.0 397,181 - +3.5 397,181 - -1.2 397,182 + +0.9 397,182 + -0.1 397,182 + +1.8 397,186 - +2.9 397,213 + -2.1 397,213 + -3.2 397,224 - -0.4 397,224 - -1.2 397,225 + -2.8 397,232 + +0.6 397,277 - -3.4 397,278 + -2.3 397,278 + +1.5 397,289 - +0.8 397,289 - -1.4 397,312 + +3.7 397,386 + MMJJ_RS02085 0.17 +1.2 397,387 - MMJJ_RS02085 0.18 +0.5 397,387 - MMJJ_RS02085 0.18 -1.6 397,388 + MMJJ_RS02085 0.18 +3.2 397,388 + MMJJ_RS02085 0.18 +0.6 397,388 + MMJJ_RS02085 0.18 +0.0 397,388 + MMJJ_RS02085 0.18 -0.8 397,389 - MMJJ_RS02085 0.18 -2.7 397,389 - MMJJ_RS02085 0.18 +1.9 397,390 + MMJJ_RS02085 0.18 -3.5 397,390 + MMJJ_RS02085 0.18 -1.6 397,390 + MMJJ_RS02085 0.18 -0.7 397,418 - MMJJ_RS02085 0.21 -0.5 397,418 - MMJJ_RS02085 0.21 -1.0 397,422 + MMJJ_RS02085 0.21 +3.0 397,451 - MMJJ_RS02085 0.24 -0.4 397,507 - MMJJ_RS02085 0.31 -2.6 397,507 - MMJJ_RS02085 0.31 +0.2 397,508 + MMJJ_RS02085 0.31 -1.1 397,516 + MMJJ_RS02085 0.31 +0.6 397,560 + MMJJ_RS02085 0.36 +0.0 397,578 - MMJJ_RS02085 0.38 +1.0 397,609 + MMJJ_RS02085 0.42 -2.2 397,610 - MMJJ_RS02085 0.42 +2.6 397,610 - MMJJ_RS02085 0.42 +1.2 397,611 + MMJJ_RS02085 0.42 +0.1 397,611 + MMJJ_RS02085 0.42 -1.9 397,611 + MMJJ_RS02085 0.42 -0.3 397,622 + MMJJ_RS02085 0.43 -3.0 397,646 - MMJJ_RS02085 0.46 -0.5 397,647 + MMJJ_RS02085 0.46 -0.7 397,697 - MMJJ_RS02085 0.51 +1.2 397,698 + MMJJ_RS02085 0.51 +0.4 397,707 - MMJJ_RS02085 0.52 -0.4 397,781 - MMJJ_RS02085 0.60 +1.2 397,833 + MMJJ_RS02085 0.66 -1.4 397,864 - MMJJ_RS02085 0.69 +2.9 397,864 - MMJJ_RS02085 0.69 -0.4 397,864 - MMJJ_RS02085 0.69 +0.0 397,864 - MMJJ_RS02085 0.69 +1.6 397,865 + MMJJ_RS02085 0.69 +3.7 397,892 - MMJJ_RS02085 0.72 -0.3 397,892 - MMJJ_RS02085 0.72 -0.8 397,896 + MMJJ_RS02085 0.73 -2.2 397,907 - MMJJ_RS02085 0.74 -3.3 397,907 - MMJJ_RS02085 0.74 +3.2 397,943 - MMJJ_RS02085 0.78 +1.2 397,943 - MMJJ_RS02085 0.78 +0.0 397,947 + MMJJ_RS02085 0.78 -1.6 397,971 - MMJJ_RS02085 0.81 +2.1 397,971 - MMJJ_RS02085 0.81 -2.5 397,971 - MMJJ_RS02085 0.81 -3.8 397,971 - MMJJ_RS02085 0.81 -0.0 397,999 + MMJJ_RS02085 0.84 -1.2 398,007 + MMJJ_RS02085 0.85 -0.4 398,034 - MMJJ_RS02085 0.88 -1.9 398,034 - MMJJ_RS02085 0.88 +1.2 398,048 - MMJJ_RS02085 0.89 +1.2 398,110 + -0.4 398,184 - -0.3 398,261 + MMJJ_RS02090 0.10 -1.3 398,268 - MMJJ_RS02090 0.11 -1.1 398,374 + MMJJ_RS02090 0.23 -1.1 398,458 + MMJJ_RS02090 0.32 +1.2 398,463 + MMJJ_RS02090 0.32 +1.2 398,479 + MMJJ_RS02090 0.34 -2.1 398,527 + MMJJ_RS02090 0.39 +0.2 398,556 + MMJJ_RS02090 0.43 -1.3 398,667 + MMJJ_RS02090 0.55 -0.8 398,752 - MMJJ_RS02090 0.64 -1.3 398,753 + -0.3 398,795 + MMJJ_RS02090 0.69 +0.2 398,804 + MMJJ_RS02090 0.70 -1.8 398,845 - MMJJ_RS02090 0.74 -1.8 398,916 - MMJJ_RS02090 0.82 -1.1 399,100 + +1.4 399,109 + -0.3 399,113 - +2.7 399,113 - +0.7 399,152 + -1.1 399,192 + MMJJ_RS02095 0.11 -1.1 399,226 - MMJJ_RS02095 0.18 -0.9 399,288 + MMJJ_RS02095 0.30 -2.9 399,309 - MMJJ_RS02095 0.35 -1.0 399,310 + MMJJ_RS02095 0.35 -0.8 399,314 - MMJJ_RS02095 0.36 +0.0 399,314 - MMJJ_RS02095 0.36 +2.3 399,357 + MMJJ_RS02095 0.45 +2.1 399,357 + MMJJ_RS02095 0.45 -2.5 399,408 + MMJJ_RS02095 0.55 +0.5 399,475 - MMJJ_RS02095 0.69 +1.2 399,484 - MMJJ_RS02095 0.71 -2.8 399,489 + MMJJ_RS02095 0.72 -0.3 399,515 + MMJJ_RS02095 0.77 -0.3 399,515 + MMJJ_RS02095 0.77 +1.2 399,520 - MMJJ_RS02095 0.78 +0.4 399,520 - MMJJ_RS02095 0.78 +3.7 399,520 - MMJJ_RS02095 0.78 +4.6 399,521 + MMJJ_RS02095 0.79 -3.6 399,535 - MMJJ_RS02095 0.82 +1.0 399,576 + -2.3 399,580 - +1.7 399,584 + +1.3 399,584 + -0.3 399,625 - -0.0 399,654 + -0.9 399,711 - +1.1 399,711 - -0.8 399,711 - +0.7 399,711 - -1.6 399,711 - -0.5 399,712 + -0.3 399,716 + -0.3 399,716 + -0.3 399,737 + +1.9 399,741 + -1.0 399,741 + -1.3 399,742 - +1.4 399,742 - +1.9 399,742 - -1.0 399,743 + -1.8 399,804 + MMJJ_RS02100 0.10 -0.6 399,817 - MMJJ_RS02100 0.14 +1.4 399,817 - MMJJ_RS02100 0.14 +2.9 399,822 - MMJJ_RS02100 0.16 +2.1 399,822 - MMJJ_RS02100 0.16 +2.0 399,823 + MMJJ_RS02100 0.16 +0.1 399,823 + MMJJ_RS02100 0.16 +0.9 399,823 + MMJJ_RS02100 0.16 +0.4 399,824 - MMJJ_RS02100 0.17 -2.3 399,825 + MMJJ_RS02100 0.17 -3.2 399,825 + MMJJ_RS02100 0.17 +0.2 399,825 + MMJJ_RS02100 0.17 -2.0 399,825 + MMJJ_RS02100 0.17 -0.2 399,825 + MMJJ_RS02100 0.17 +2.5 399,912 + MMJJ_RS02100 0.47 +5.0 399,954 + MMJJ_RS02100 0.62 +1.3 399,961 - MMJJ_RS02100 0.64 +1.1 399,962 + MMJJ_RS02100 0.64 +0.3 399,962 + MMJJ_RS02100 0.64 +4.1 399,965 + MMJJ_RS02100 0.65 +1.8 399,965 + MMJJ_RS02100 0.65 -1.8 399,987 - MMJJ_RS02100 0.73 -2.4 399,993 + MMJJ_RS02100 0.75 +1.5 400,022 + MMJJ_RS02100 0.85 -4.8 400,022 + MMJJ_RS02100 0.85 -0.8
Or see this region's nucleotide sequence