Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02035

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
387,235	+		MMJJ_RS02020	0.80	+1.2
387,388	-				+0.1
387,459	+				+1.8
387,765	-				-0.4
387,766	+				-0.1
387,777	+				-1.1
387,781	+				-2.1
387,781	+				-0.8
387,781	+				-1.4
387,781	+				-1.8
387,781	+				-2.0
387,782	-				-0.8
387,782	-				-1.7
387,782	-				-0.4
387,785	+				-2.9
387,785	+				-0.8
387,796	+				+0.2
387,808	-				-2.8
387,825	+				-0.1
387,825	+				+1.2
387,828	-				+0.2
387,833	-				-1.1
388,037	-				-1.1
388,038	+				-1.9
388,045	+				+0.9
388,049	+				-2.2
388,060	+				-1.8
388,159	-		MMJJ_RS02035	0.13	-0.9
388,203	-		MMJJ_RS02035	0.18	-1.1
388,361	-				-0.4
388,361	-		MMJJ_RS02035	0.36	-1.1
388,361	-		MMJJ_RS02035	0.36	-2.2
388,362	+		MMJJ_RS02035	0.36	-2.0
388,363	-		MMJJ_RS02035	0.36	-2.3
388,431	-		MMJJ_RS02035	0.44	-0.1
388,470	-		MMJJ_RS02035	0.48	-1.4
388,470	-		MMJJ_RS02035	0.48	-2.1
388,470	-		MMJJ_RS02035	0.48	-3.2
388,471	+		MMJJ_RS02035	0.49	+0.0
389,080	+		MMJJ_RS02040	0.60	-0.1
389,111	-		MMJJ_RS02040	0.73	-2.2
389,125	+		MMJJ_RS02040	0.79	-0.8
389,209	+				-2.1
389,262	+				+0.2
389,309	-				-1.8
389,309	-				+2.7
389,309	-				+0.1
389,313	-				-3.5
389,313	-				+2.2
389,314	+				-0.4
389,321	-				-1.9
389,325	-				-1.3
389,351	-				-0.2
389,351	-				+0.4
389,352	+				-2.6
389,352	+				-2.6
389,353	-				+1.3
389,353	-				-0.9
389,353	-				-0.0
389,353	-				-3.0
389,353	-				+4.2
389,353	-				-3.3
389,353	-				+3.3
389,354	+				+0.6
389,354	+				+1.6
389,354	+				-3.3
389,354	+				-0.7
389,354	+				+0.6
389,354	+				-1.1
389,354	+				+0.6
389,354	+				+1.0
389,354	+				-0.4
389,354	+				+1.8
389,354	+				-0.5
389,354	+				+0.6
389,357	-				+1.3
389,357	-				-0.2
389,357	-				-2.9
389,358	+				+1.7
389,358	+				+3.3
389,358	+				+0.5
389,369	-				+4.1
389,375	-				+2.4
389,375	-				+0.0
389,381	-				+2.0
389,398	+				-1.8
389,450	-				+0.7
389,450	-				-0.4
389,451	+				+1.4
389,451	+				+4.1
389,452	-				+0.2
389,453	+				+0.7
389,453	+				+0.8
389,454	-				+1.6
389,455	+				+1.2
389,477	+				-0.9
389,482	-				-0.9
389,483	+				+2.8
389,483	+				+1.1
389,483	+				+1.9
389,490	-				+1.8
389,490	-				-0.1
389,524	-				+0.7
389,569	-				-0.3
389,588	-				+2.7
389,588	-				+0.9
389,589	+				-2.3
389,589	+				+0.4
389,592	-				+0.4
389,609	+				+1.2
389,618	-				+0.8
389,626	+				+2.4
389,626	+				-1.4
389,630	+				-0.1
389,630	+				-0.1
389,630	+				-0.1
389,630	+				-2.0
389,631	-				+1.5
389,676	-				+1.6
389,677	+				-0.8
389,679	-				-3.5
389,680	+				-1.0
389,686	-				+0.2
389,773	+				-2.5
389,810	+		MMJJ_RS02045	0.14	-0.4
389,892	-		MMJJ_RS02045	0.27	-0.8