Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01875 and MMJJ_RS01880 are separated by 22 nucleotides MMJJ_RS01880 and MMJJ_RS01885 are separated by 52 nucleotides MMJJ_RS01885 and MMJJ_RS01890 are separated by 80 nucleotides
MMJJ_RS01875: MMJJ_RS01875 - global nitrogen regulator NrpR, at 360,058 to 361,668
_RS01875
MMJJ_RS01880: MMJJ_RS01880 - RlmE family RNA methyltransferase, at 361,691 to 362,467
_RS01880
MMJJ_RS01885: MMJJ_RS01885 - KH domain-containing protein, at 362,520 to 363,074
_RS01885
MMJJ_RS01890: MMJJ_RS01890 - serine protein kinase RIO, at 363,155 to 363,976
_RS01890
Position (kb) 361
362
363 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 360.900 kb on - strand, within MMJJ_RS01875 at 360.911 kb on - strand, within MMJJ_RS01875 at 360.912 kb on + strand, within MMJJ_RS01875 at 360.912 kb on + strand, within MMJJ_RS01875 at 361.046 kb on - strand, within MMJJ_RS01875 at 361.085 kb on - strand at 361.112 kb on + strand, within MMJJ_RS01875 at 361.245 kb on + strand at 361.449 kb on + strand, within MMJJ_RS01875 at 361.679 kb on + strand at 361.740 kb on + strand at 361.743 kb on + strand at 361.785 kb on + strand, within MMJJ_RS01880 at 361.848 kb on - strand, within MMJJ_RS01880 at 362.107 kb on - strand, within MMJJ_RS01880 at 362.278 kb on + strand, within MMJJ_RS01880 at 362.280 kb on + strand, within MMJJ_RS01880 at 362.340 kb on - strand, within MMJJ_RS01880 at 362.341 kb on + strand, within MMJJ_RS01880 at 362.478 kb on + strand at 362.481 kb on + strand at 362.482 kb on - strand at 362.491 kb on - strand at 362.491 kb on - strand at 362.492 kb on + strand at 362.505 kb on + strand at 362.516 kb on + strand at 362.516 kb on + strand at 362.522 kb on + strand at 362.535 kb on + strand at 362.550 kb on + strand at 362.716 kb on - strand, within MMJJ_RS01885 at 363.112 kb on + strand at 363.114 kb on - strand at 363.118 kb on - strand at 363.118 kb on - strand at 363.118 kb on - strand at 363.118 kb on - strand at 363.118 kb on - strand at 363.119 kb on + strand at 363.125 kb on - strand at 363.154 kb on + strand at 363.157 kb on + strand at 363.160 kb on + strand at 363.284 kb on + strand at 363.343 kb on + strand, within MMJJ_RS01890 at 363.370 kb on - strand, within MMJJ_RS01890 at 363.398 kb on - strand, within MMJJ_RS01890 at 363.398 kb on - strand, within MMJJ_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 360,900 - MMJJ_RS01875 0.52 -1.9 360,911 - MMJJ_RS01875 0.53 +2.4 360,912 + MMJJ_RS01875 0.53 +0.9 360,912 + MMJJ_RS01875 0.53 -1.4 361,046 - MMJJ_RS01875 0.61 -0.9 361,085 - +0.1 361,112 + MMJJ_RS01875 0.65 +0.6 361,245 + +1.1 361,449 + MMJJ_RS01875 0.86 +0.7 361,679 + +4.1 361,740 + -1.4 361,743 + -1.4 361,785 + MMJJ_RS01880 0.12 -1.2 361,848 - MMJJ_RS01880 0.20 -2.6 362,107 - MMJJ_RS01880 0.54 -2.0 362,278 + MMJJ_RS01880 0.76 -1.9 362,280 + MMJJ_RS01880 0.76 -0.9 362,340 - MMJJ_RS01880 0.84 +0.1 362,341 + MMJJ_RS01880 0.84 -0.6 362,478 + -3.6 362,481 + +0.1 362,482 - +0.1 362,491 - -4.3 362,491 - -1.4 362,492 + -3.3 362,505 + +1.6 362,516 + -0.9 362,516 + +2.1 362,522 + -1.8 362,535 + +0.7 362,550 + -2.6 362,716 - MMJJ_RS01885 0.35 -0.4 363,112 + -0.4 363,114 - +0.4 363,118 - +0.1 363,118 - -1.6 363,118 - -1.7 363,118 - -2.7 363,118 - +0.0 363,119 + +1.1 363,125 - +2.1 363,154 + -1.7 363,157 + -0.4 363,160 + -1.2 363,284 + +1.1 363,343 + MMJJ_RS01890 0.23 +0.6 363,370 - MMJJ_RS01890 0.26 +0.6 363,398 - MMJJ_RS01890 0.30 -1.9 363,398 - MMJJ_RS01890 0.30 -0.4
Or see this region's nucleotide sequence