Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01830 and MMJJ_RS01835 are separated by 128 nucleotides MMJJ_RS01835 and MMJJ_RS01840 are separated by 213 nucleotides MMJJ_RS01840 and MMJJ_RS01845 are separated by 96 nucleotides
MMJJ_RS01830: MMJJ_RS01830 - tRNA(Ile)(2)-agmatinylcytidine synthase, at 350,464 to 351,738
_RS01830
MMJJ_RS01835: MMJJ_RS01835 - tRNA pseudouridine(13) synthase TruD, at 351,867 to 353,159
_RS01835
MMJJ_RS01840: MMJJ_RS01840 - flavodoxin family protein, at 353,373 to 353,948
_RS01840
MMJJ_RS01845: MMJJ_RS01845 - acetolactate decarboxylase, at 354,045 to 354,845
_RS01845
Position (kb) 351
352
353
354 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 350.928 kb on - strand, within MMJJ_RS01830 at 351.034 kb on - strand, within MMJJ_RS01830 at 351.151 kb on + strand, within MMJJ_RS01830 at 351.248 kb on - strand, within MMJJ_RS01830 at 351.253 kb on + strand, within MMJJ_RS01830 at 351.400 kb on - strand, within MMJJ_RS01830 at 351.569 kb on + strand, within MMJJ_RS01830 at 351.675 kb on - strand at 351.686 kb on - strand at 351.708 kb on - strand at 351.734 kb on - strand at 351.750 kb on + strand at 351.808 kb on - strand at 351.808 kb on - strand at 351.809 kb on + strand at 351.809 kb on + strand at 351.812 kb on - strand at 351.813 kb on + strand at 351.813 kb on + strand at 351.813 kb on + strand at 351.813 kb on + strand at 351.813 kb on + strand at 351.817 kb on + strand at 351.835 kb on + strand at 351.837 kb on + strand at 351.839 kb on + strand at 351.839 kb on + strand at 351.839 kb on + strand at 351.839 kb on + strand at 351.863 kb on - strand at 351.881 kb on - strand at 351.916 kb on - strand at 351.916 kb on - strand at 352.016 kb on + strand, within MMJJ_RS01835 at 352.016 kb on + strand, within MMJJ_RS01835 at 352.016 kb on + strand, within MMJJ_RS01835 at 352.079 kb on + strand, within MMJJ_RS01835 at 352.099 kb on - strand, within MMJJ_RS01835 at 352.202 kb on + strand, within MMJJ_RS01835 at 352.213 kb on - strand, within MMJJ_RS01835 at 352.213 kb on - strand, within MMJJ_RS01835 at 352.214 kb on + strand, within MMJJ_RS01835 at 352.214 kb on + strand, within MMJJ_RS01835 at 352.214 kb on + strand, within MMJJ_RS01835 at 352.277 kb on + strand, within MMJJ_RS01835 at 352.280 kb on - strand, within MMJJ_RS01835 at 352.331 kb on - strand, within MMJJ_RS01835 at 352.344 kb on + strand, within MMJJ_RS01835 at 352.344 kb on + strand, within MMJJ_RS01835 at 352.432 kb on - strand, within MMJJ_RS01835 at 352.472 kb on + strand, within MMJJ_RS01835 at 352.482 kb on - strand, within MMJJ_RS01835 at 352.482 kb on - strand, within MMJJ_RS01835 at 352.482 kb on - strand, within MMJJ_RS01835 at 352.482 kb on - strand, within MMJJ_RS01835 at 352.483 kb on + strand, within MMJJ_RS01835 at 352.486 kb on - strand, within MMJJ_RS01835 at 352.486 kb on - strand, within MMJJ_RS01835 at 352.487 kb on + strand, within MMJJ_RS01835 at 352.489 kb on - strand, within MMJJ_RS01835 at 352.489 kb on - strand, within MMJJ_RS01835 at 352.490 kb on + strand, within MMJJ_RS01835 at 352.495 kb on + strand, within MMJJ_RS01835 at 352.539 kb on + strand, within MMJJ_RS01835 at 352.558 kb on + strand, within MMJJ_RS01835 at 352.558 kb on + strand, within MMJJ_RS01835 at 352.558 kb on + strand, within MMJJ_RS01835 at 352.584 kb on - strand, within MMJJ_RS01835 at 352.590 kb on - strand, within MMJJ_RS01835 at 352.590 kb on - strand, within MMJJ_RS01835 at 352.590 kb on - strand, within MMJJ_RS01835 at 352.591 kb on + strand, within MMJJ_RS01835 at 352.591 kb on + strand, within MMJJ_RS01835 at 352.606 kb on - strand, within MMJJ_RS01835 at 352.607 kb on + strand, within MMJJ_RS01835 at 352.686 kb on + strand, within MMJJ_RS01835 at 352.722 kb on - strand, within MMJJ_RS01835 at 352.723 kb on + strand at 352.742 kb on - strand, within MMJJ_RS01835 at 352.806 kb on - strand, within MMJJ_RS01835 at 352.806 kb on - strand, within MMJJ_RS01835 at 352.806 kb on - strand, within MMJJ_RS01835 at 352.807 kb on + strand, within MMJJ_RS01835 at 352.807 kb on + strand, within MMJJ_RS01835 at 352.807 kb on + strand, within MMJJ_RS01835 at 352.811 kb on + strand, within MMJJ_RS01835 at 352.811 kb on + strand, within MMJJ_RS01835 at 352.858 kb on - strand, within MMJJ_RS01835 at 352.868 kb on - strand, within MMJJ_RS01835 at 352.869 kb on + strand, within MMJJ_RS01835 at 352.869 kb on + strand, within MMJJ_RS01835 at 352.870 kb on - strand at 352.871 kb on + strand, within MMJJ_RS01835 at 352.913 kb on - strand, within MMJJ_RS01835 at 352.913 kb on - strand, within MMJJ_RS01835 at 352.914 kb on + strand, within MMJJ_RS01835 at 353.038 kb on - strand at 353.038 kb on - strand at 353.049 kb on - strand at 353.050 kb on + strand at 353.057 kb on - strand at 353.096 kb on - strand at 353.166 kb on - strand at 353.166 kb on - strand at 353.166 kb on - strand at 353.166 kb on - strand at 353.167 kb on + strand at 353.167 kb on + strand at 353.167 kb on + strand at 353.167 kb on + strand at 353.167 kb on + strand at 353.168 kb on - strand at 353.168 kb on - strand at 353.168 kb on - strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.169 kb on + strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.170 kb on - strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.171 kb on + strand at 353.172 kb on - strand at 353.172 kb on - strand at 353.172 kb on - strand at 353.172 kb on - strand at 353.173 kb on + strand at 353.173 kb on + strand at 353.190 kb on - strand at 353.190 kb on - strand at 353.190 kb on - strand at 353.191 kb on + strand at 353.235 kb on + strand at 353.235 kb on + strand at 353.235 kb on + strand at 353.293 kb on - strand at 353.293 kb on - strand at 353.294 kb on + strand at 353.294 kb on + strand at 353.298 kb on + strand at 353.302 kb on - strand at 353.430 kb on + strand at 353.433 kb on - strand, within MMJJ_RS01840 at 353.539 kb on + strand, within MMJJ_RS01840 at 353.742 kb on + strand, within MMJJ_RS01840 at 353.745 kb on - strand, within MMJJ_RS01840 at 353.745 kb on - strand at 353.748 kb on - strand, within MMJJ_RS01840 at 353.749 kb on + strand, within MMJJ_RS01840 at 353.750 kb on - strand, within MMJJ_RS01840 at 353.751 kb on + strand, within MMJJ_RS01840 at 353.771 kb on - strand, within MMJJ_RS01840 at 353.772 kb on + strand, within MMJJ_RS01840 at 353.778 kb on - strand, within MMJJ_RS01840 at 353.797 kb on - strand, within MMJJ_RS01840 at 353.797 kb on - strand, within MMJJ_RS01840 at 353.797 kb on - strand, within MMJJ_RS01840 at 353.798 kb on + strand, within MMJJ_RS01840 at 353.807 kb on - strand, within MMJJ_RS01840 at 353.807 kb on - strand, within MMJJ_RS01840 at 353.807 kb on - strand, within MMJJ_RS01840 at 353.808 kb on + strand, within MMJJ_RS01840 at 353.838 kb on - strand, within MMJJ_RS01840 at 353.838 kb on - strand, within MMJJ_RS01840 at 353.838 kb on - strand, within MMJJ_RS01840 at 353.838 kb on - strand, within MMJJ_RS01840 at 353.838 kb on - strand, within MMJJ_RS01840 at 353.839 kb on + strand, within MMJJ_RS01840 at 353.839 kb on + strand, within MMJJ_RS01840 at 353.839 kb on + strand, within MMJJ_RS01840 at 353.839 kb on + strand, within MMJJ_RS01840 at 353.839 kb on + strand, within MMJJ_RS01840 at 353.839 kb on + strand, within MMJJ_RS01840 at 353.850 kb on + strand, within MMJJ_RS01840 at 353.852 kb on - strand, within MMJJ_RS01840 at 353.853 kb on + strand, within MMJJ_RS01840 at 353.886 kb on + strand, within MMJJ_RS01840 at 353.930 kb on - strand at 353.966 kb on - strand at 353.967 kb on + strand at 353.983 kb on - strand at 354.001 kb on - strand at 354.004 kb on + strand at 354.004 kb on + strand at 354.046 kb on - strand at 354.047 kb on + strand at 354.066 kb on - strand at 354.066 kb on - strand at 354.083 kb on - strand at 354.098 kb on - strand at 354.133 kb on - strand, within MMJJ_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 350,928 - MMJJ_RS01830 0.36 -0.9 351,034 - MMJJ_RS01830 0.45 -1.5 351,151 + MMJJ_RS01830 0.54 -0.9 351,248 - MMJJ_RS01830 0.61 -1.7 351,253 + MMJJ_RS01830 0.62 +0.1 351,400 - MMJJ_RS01830 0.73 +1.7 351,569 + MMJJ_RS01830 0.87 -1.9 351,675 - -1.7 351,686 - -2.5 351,708 - +1.1 351,734 - -3.0 351,750 + -2.0 351,808 - +0.5 351,808 - -1.8 351,809 + -3.9 351,809 + -1.5 351,812 - -0.2 351,813 + -2.3 351,813 + +1.4 351,813 + +0.1 351,813 + +1.8 351,813 + -1.5 351,817 + +0.3 351,835 + -1.8 351,837 + +1.0 351,839 + -2.5 351,839 + -0.3 351,839 + -0.5 351,839 + -0.7 351,863 - -0.5 351,881 - +1.3 351,916 - -1.7 351,916 - +1.7 352,016 + MMJJ_RS01835 0.12 +2.4 352,016 + MMJJ_RS01835 0.12 -0.5 352,016 + MMJJ_RS01835 0.12 -3.0 352,079 + MMJJ_RS01835 0.16 -1.4 352,099 - MMJJ_RS01835 0.18 -1.3 352,202 + MMJJ_RS01835 0.26 +1.8 352,213 - MMJJ_RS01835 0.27 +0.8 352,213 - MMJJ_RS01835 0.27 -0.9 352,214 + MMJJ_RS01835 0.27 +1.0 352,214 + MMJJ_RS01835 0.27 +1.3 352,214 + MMJJ_RS01835 0.27 +1.8 352,277 + MMJJ_RS01835 0.32 -1.5 352,280 - MMJJ_RS01835 0.32 -0.4 352,331 - MMJJ_RS01835 0.36 -2.4 352,344 + MMJJ_RS01835 0.37 +1.4 352,344 + MMJJ_RS01835 0.37 +0.7 352,432 - MMJJ_RS01835 0.44 -1.8 352,472 + MMJJ_RS01835 0.47 +0.5 352,482 - MMJJ_RS01835 0.48 -0.6 352,482 - MMJJ_RS01835 0.48 +0.9 352,482 - MMJJ_RS01835 0.48 -1.7 352,482 - MMJJ_RS01835 0.48 +3.2 352,483 + MMJJ_RS01835 0.48 +1.7 352,486 - MMJJ_RS01835 0.48 -1.9 352,486 - MMJJ_RS01835 0.48 -1.6 352,487 + MMJJ_RS01835 0.48 -0.4 352,489 - MMJJ_RS01835 0.48 -1.9 352,489 - MMJJ_RS01835 0.48 +0.5 352,490 + MMJJ_RS01835 0.48 +1.7 352,495 + MMJJ_RS01835 0.49 -3.0 352,539 + MMJJ_RS01835 0.52 +0.5 352,558 + MMJJ_RS01835 0.53 -1.5 352,558 + MMJJ_RS01835 0.53 +1.0 352,558 + MMJJ_RS01835 0.53 -3.0 352,584 - MMJJ_RS01835 0.55 -2.5 352,590 - MMJJ_RS01835 0.56 -3.1 352,590 - MMJJ_RS01835 0.56 +0.6 352,590 - MMJJ_RS01835 0.56 -4.0 352,591 + MMJJ_RS01835 0.56 +0.1 352,591 + MMJJ_RS01835 0.56 -1.0 352,606 - MMJJ_RS01835 0.57 +0.1 352,607 + MMJJ_RS01835 0.57 -2.9 352,686 + MMJJ_RS01835 0.63 +3.6 352,722 - MMJJ_RS01835 0.66 -3.1 352,723 + +1.1 352,742 - MMJJ_RS01835 0.68 +1.1 352,806 - MMJJ_RS01835 0.73 -2.0 352,806 - MMJJ_RS01835 0.73 +2.0 352,806 - MMJJ_RS01835 0.73 +1.0 352,807 + MMJJ_RS01835 0.73 -2.4 352,807 + MMJJ_RS01835 0.73 +1.6 352,807 + MMJJ_RS01835 0.73 -2.2 352,811 + MMJJ_RS01835 0.73 -3.0 352,811 + MMJJ_RS01835 0.73 +0.8 352,858 - MMJJ_RS01835 0.77 +1.1 352,868 - MMJJ_RS01835 0.77 -2.7 352,869 + MMJJ_RS01835 0.77 -3.7 352,869 + MMJJ_RS01835 0.77 -3.8 352,870 - -0.5 352,871 + MMJJ_RS01835 0.78 +0.1 352,913 - MMJJ_RS01835 0.81 +0.7 352,913 - MMJJ_RS01835 0.81 +3.5 352,914 + MMJJ_RS01835 0.81 -1.6 353,038 - -2.6 353,038 - +0.2 353,049 - +1.1 353,050 + +4.6 353,057 - -1.1 353,096 - +3.0 353,166 - +1.4 353,166 - -0.4 353,166 - -0.9 353,166 - +0.6 353,167 + -1.8 353,167 + -0.3 353,167 + -0.9 353,167 + -1.7 353,167 + +1.8 353,168 - -1.4 353,168 - +0.3 353,168 - -3.5 353,169 + +1.3 353,169 + +1.4 353,169 + +2.9 353,169 + +1.2 353,169 + -0.9 353,169 + -2.1 353,169 + +0.4 353,169 + +2.6 353,170 - -3.0 353,170 - +1.1 353,170 - +0.6 353,170 - +0.9 353,170 - -3.8 353,170 - +1.3 353,170 - +2.5 353,170 - -2.9 353,170 - -0.5 353,171 + +2.4 353,171 + -0.9 353,171 + -1.8 353,171 + +4.5 353,171 + +0.1 353,171 + +1.1 353,171 + -2.3 353,171 + +0.1 353,171 + -0.5 353,171 + +1.7 353,172 - +1.1 353,172 - -1.5 353,172 - -1.2 353,172 - +1.6 353,173 + +0.0 353,173 + -1.9 353,190 - +0.7 353,190 - +2.8 353,190 - +0.1 353,191 + -2.2 353,235 + +0.4 353,235 + -0.6 353,235 + -0.5 353,293 - +0.1 353,293 - +0.7 353,294 + -1.9 353,294 + +0.4 353,298 + +1.2 353,302 - -0.3 353,430 + -0.9 353,433 - MMJJ_RS01840 0.10 -2.5 353,539 + MMJJ_RS01840 0.29 -2.0 353,742 + MMJJ_RS01840 0.64 +0.7 353,745 - MMJJ_RS01840 0.65 -3.8 353,745 - +0.1 353,748 - MMJJ_RS01840 0.65 +1.4 353,749 + MMJJ_RS01840 0.65 -1.7 353,750 - MMJJ_RS01840 0.65 +1.2 353,751 + MMJJ_RS01840 0.66 -0.1 353,771 - MMJJ_RS01840 0.69 +4.9 353,772 + MMJJ_RS01840 0.69 -1.7 353,778 - MMJJ_RS01840 0.70 +0.0 353,797 - MMJJ_RS01840 0.74 -0.5 353,797 - MMJJ_RS01840 0.74 -1.5 353,797 - MMJJ_RS01840 0.74 +3.2 353,798 + MMJJ_RS01840 0.74 -2.9 353,807 - MMJJ_RS01840 0.75 -0.1 353,807 - MMJJ_RS01840 0.75 -2.6 353,807 - MMJJ_RS01840 0.75 +1.6 353,808 + MMJJ_RS01840 0.76 -1.4 353,838 - MMJJ_RS01840 0.81 -0.1 353,838 - MMJJ_RS01840 0.81 +4.8 353,838 - MMJJ_RS01840 0.81 +1.9 353,838 - MMJJ_RS01840 0.81 -0.0 353,838 - MMJJ_RS01840 0.81 -2.7 353,839 + MMJJ_RS01840 0.81 -3.4 353,839 + MMJJ_RS01840 0.81 -1.2 353,839 + MMJJ_RS01840 0.81 -1.7 353,839 + MMJJ_RS01840 0.81 -3.5 353,839 + MMJJ_RS01840 0.81 +0.1 353,839 + MMJJ_RS01840 0.81 +0.9 353,850 + MMJJ_RS01840 0.83 -0.8 353,852 - MMJJ_RS01840 0.83 -0.5 353,853 + MMJJ_RS01840 0.83 -0.2 353,886 + MMJJ_RS01840 0.89 -1.1 353,930 - -2.0 353,966 - +1.4 353,967 + -1.6 353,983 - -0.5 354,001 - +4.7 354,004 + +1.4 354,004 + +3.7 354,046 - +2.2 354,047 + +0.5 354,066 - -4.0 354,066 - +2.0 354,083 - +2.5 354,098 - -1.1 354,133 - MMJJ_RS01845 0.11 -1.7
Or see this region's nucleotide sequence