Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01810 and MMJJ_RS01815 are separated by 22 nucleotides MMJJ_RS01815 and MMJJ_RS01820 are separated by 10 nucleotides MMJJ_RS01820 and MMJJ_RS01825 are separated by 105 nucleotides MMJJ_RS01825 and MMJJ_RS01830 are separated by 46 nucleotides
MMJJ_RS01810: MMJJ_RS01810 - methyl coenzyme M reductase system, component A2, at 347,308 to 348,903
_RS01810
MMJJ_RS01815: MMJJ_RS01815 - DUF134 domain-containing protein, at 348,926 to 349,321
_RS01815
MMJJ_RS01820: MMJJ_RS01820 - MJ1244 family protein, at 349,332 to 349,661
_RS01820
MMJJ_RS01825: MMJJ_RS01825 - DNA repair and recombination protein RadB, at 349,767 to 350,417
_RS01825
MMJJ_RS01830: MMJJ_RS01830 - tRNA(Ile)(2)-agmatinylcytidine synthase, at 350,464 to 351,738
_RS01830
Position (kb) 349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 348.850 kb on - strand at 349.022 kb on - strand, within MMJJ_RS01815 at 349.027 kb on - strand, within MMJJ_RS01815 at 349.046 kb on + strand, within MMJJ_RS01815 at 349.065 kb on + strand, within MMJJ_RS01815 at 349.211 kb on - strand, within MMJJ_RS01815 at 349.252 kb on - strand, within MMJJ_RS01815 at 349.256 kb on - strand, within MMJJ_RS01815 at 349.333 kb on - strand at 349.333 kb on - strand at 349.382 kb on - strand, within MMJJ_RS01820 at 349.382 kb on - strand, within MMJJ_RS01820 at 349.382 kb on - strand, within MMJJ_RS01820 at 349.382 kb on - strand, within MMJJ_RS01820 at 349.383 kb on + strand, within MMJJ_RS01820 at 349.383 kb on + strand, within MMJJ_RS01820 at 349.383 kb on + strand, within MMJJ_RS01820 at 349.383 kb on + strand, within MMJJ_RS01820 at 349.480 kb on + strand, within MMJJ_RS01820 at 349.677 kb on - strand at 349.677 kb on - strand at 349.677 kb on - strand at 349.696 kb on - strand at 349.696 kb on - strand at 349.696 kb on - strand at 349.712 kb on - strand at 349.714 kb on - strand at 349.714 kb on - strand at 349.714 kb on - strand at 349.714 kb on - strand at 349.715 kb on + strand at 349.715 kb on + strand at 349.715 kb on + strand at 349.715 kb on + strand at 349.715 kb on + strand at 349.716 kb on - strand at 349.718 kb on - strand at 349.719 kb on + strand at 349.751 kb on + strand at 349.781 kb on - strand at 349.809 kb on - strand at 349.863 kb on + strand, within MMJJ_RS01825 at 349.863 kb on + strand, within MMJJ_RS01825 at 349.921 kb on + strand, within MMJJ_RS01825 at 349.954 kb on + strand, within MMJJ_RS01825 at 349.954 kb on + strand, within MMJJ_RS01825 at 349.976 kb on - strand, within MMJJ_RS01825 at 350.055 kb on + strand, within MMJJ_RS01825 at 350.093 kb on + strand, within MMJJ_RS01825 at 350.120 kb on - strand, within MMJJ_RS01825 at 350.120 kb on - strand, within MMJJ_RS01825 at 350.121 kb on + strand, within MMJJ_RS01825 at 350.121 kb on + strand, within MMJJ_RS01825 at 350.211 kb on - strand, within MMJJ_RS01825 at 350.334 kb on + strand, within MMJJ_RS01825 at 350.373 kb on - strand at 350.417 kb on - strand at 350.418 kb on + strand at 350.444 kb on + strand at 350.449 kb on - strand at 350.461 kb on + strand at 350.461 kb on + strand at 350.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 348,850 - -0.5 349,022 - MMJJ_RS01815 0.24 -2.5 349,027 - MMJJ_RS01815 0.26 +4.1 349,046 + MMJJ_RS01815 0.30 -0.9 349,065 + MMJJ_RS01815 0.35 -0.5 349,211 - MMJJ_RS01815 0.72 +1.3 349,252 - MMJJ_RS01815 0.82 -0.9 349,256 - MMJJ_RS01815 0.83 -2.2 349,333 - -0.7 349,333 - +0.2 349,382 - MMJJ_RS01820 0.15 -0.4 349,382 - MMJJ_RS01820 0.15 -0.9 349,382 - MMJJ_RS01820 0.15 -1.1 349,382 - MMJJ_RS01820 0.15 -1.1 349,383 + MMJJ_RS01820 0.15 +0.3 349,383 + MMJJ_RS01820 0.15 +0.1 349,383 + MMJJ_RS01820 0.15 -2.2 349,383 + MMJJ_RS01820 0.15 -1.8 349,480 + MMJJ_RS01820 0.45 -1.7 349,677 - -0.9 349,677 - -2.1 349,677 - +0.1 349,696 - +1.1 349,696 - +2.3 349,696 - +0.8 349,712 - +3.7 349,714 - +2.8 349,714 - -2.2 349,714 - +1.1 349,714 - -0.5 349,715 + +3.7 349,715 + -2.5 349,715 + +1.1 349,715 + -1.5 349,715 + -0.8 349,716 - -0.2 349,718 - -3.3 349,719 + +1.8 349,751 + -1.5 349,781 - +2.2 349,809 - -1.7 349,863 + MMJJ_RS01825 0.15 -4.2 349,863 + MMJJ_RS01825 0.15 -3.3 349,921 + MMJJ_RS01825 0.24 -3.1 349,954 + MMJJ_RS01825 0.29 -1.3 349,954 + MMJJ_RS01825 0.29 -1.8 349,976 - MMJJ_RS01825 0.32 -1.1 350,055 + MMJJ_RS01825 0.44 +0.1 350,093 + MMJJ_RS01825 0.50 -2.1 350,120 - MMJJ_RS01825 0.54 +0.8 350,120 - MMJJ_RS01825 0.54 +1.4 350,121 + MMJJ_RS01825 0.54 -0.1 350,121 + MMJJ_RS01825 0.54 -1.9 350,211 - MMJJ_RS01825 0.68 -2.7 350,334 + MMJJ_RS01825 0.87 +1.9 350,373 - -1.3 350,417 - +1.8 350,418 + -3.6 350,444 + -0.1 350,449 - +2.8 350,461 + -0.9 350,461 + -1.7 350,465 - -1.1
Or see this region's nucleotide sequence