Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01790 and MMJJ_RS01795 are separated by 63 nucleotides MMJJ_RS01795 and MMJJ_RS01800 are separated by 64 nucleotides MMJJ_RS01800 and MMJJ_RS01805 are separated by 46 nucleotides MMJJ_RS01805 and MMJJ_RS01810 are separated by 19 nucleotides
MMJJ_RS01790: MMJJ_RS01790 - pyridoxamine 5'-phosphate oxidase family protein, at 344,326 to 344,727
_RS01790
MMJJ_RS01795: MMJJ_RS01795 - TIGR00266 family protein, at 344,791 to 345,459
_RS01795
MMJJ_RS01800: MMJJ_RS01800 - ADP-ribosylglycohydrolase family protein, at 345,524 to 346,432
_RS01800
MMJJ_RS01805: MMJJ_RS01805 - sugar phosphate isomerase/epimerase, at 346,479 to 347,288
_RS01805
MMJJ_RS01810: MMJJ_RS01810 - methyl coenzyme M reductase system, component A2, at 347,308 to 348,903
_RS01810
Position (kb) 345
346
347 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 344.537 kb on + strand, within MMJJ_RS01790 at 344.641 kb on - strand, within MMJJ_RS01790 at 344.681 kb on + strand, within MMJJ_RS01790 at 344.717 kb on + strand at 344.729 kb on - strand at 344.729 kb on - strand at 344.729 kb on - strand at 344.730 kb on + strand at 344.730 kb on + strand at 344.788 kb on - strand at 344.788 kb on - strand at 344.789 kb on + strand at 344.848 kb on + strand at 344.865 kb on + strand, within MMJJ_RS01795 at 344.892 kb on + strand, within MMJJ_RS01795 at 344.892 kb on + strand, within MMJJ_RS01795 at 344.892 kb on + strand, within MMJJ_RS01795 at 344.957 kb on + strand, within MMJJ_RS01795 at 345.014 kb on + strand, within MMJJ_RS01795 at 345.112 kb on + strand, within MMJJ_RS01795 at 345.157 kb on - strand, within MMJJ_RS01795 at 345.180 kb on + strand, within MMJJ_RS01795 at 345.180 kb on + strand, within MMJJ_RS01795 at 345.182 kb on + strand, within MMJJ_RS01795 at 345.210 kb on - strand, within MMJJ_RS01795 at 345.211 kb on + strand, within MMJJ_RS01795 at 345.256 kb on - strand, within MMJJ_RS01795 at 345.261 kb on - strand, within MMJJ_RS01795 at 345.271 kb on - strand, within MMJJ_RS01795 at 345.307 kb on - strand, within MMJJ_RS01795 at 345.340 kb on - strand, within MMJJ_RS01795 at 345.340 kb on - strand, within MMJJ_RS01795 at 345.341 kb on + strand, within MMJJ_RS01795 at 345.341 kb on + strand, within MMJJ_RS01795 at 345.349 kb on + strand, within MMJJ_RS01795 at 345.349 kb on + strand, within MMJJ_RS01795 at 345.354 kb on - strand, within MMJJ_RS01795 at 345.383 kb on + strand, within MMJJ_RS01795 at 345.420 kb on + strand at 345.474 kb on - strand at 345.475 kb on + strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.484 kb on - strand at 345.485 kb on + strand at 345.485 kb on + strand at 345.492 kb on - strand at 345.501 kb on - strand at 345.507 kb on + strand at 345.508 kb on - strand at 345.509 kb on + strand at 345.509 kb on + strand at 345.511 kb on + strand at 345.511 kb on + strand at 345.511 kb on + strand at 345.522 kb on + strand at 345.533 kb on + strand at 345.572 kb on - strand at 345.630 kb on - strand, within MMJJ_RS01800 at 345.630 kb on - strand, within MMJJ_RS01800 at 345.631 kb on + strand, within MMJJ_RS01800 at 345.631 kb on + strand, within MMJJ_RS01800 at 345.651 kb on - strand, within MMJJ_RS01800 at 345.651 kb on - strand, within MMJJ_RS01800 at 345.651 kb on - strand, within MMJJ_RS01800 at 345.651 kb on - strand, within MMJJ_RS01800 at 345.652 kb on + strand, within MMJJ_RS01800 at 345.652 kb on + strand, within MMJJ_RS01800 at 345.652 kb on + strand, within MMJJ_RS01800 at 345.689 kb on - strand, within MMJJ_RS01800 at 345.786 kb on + strand, within MMJJ_RS01800 at 345.793 kb on + strand, within MMJJ_RS01800 at 345.793 kb on + strand, within MMJJ_RS01800 at 345.812 kb on - strand, within MMJJ_RS01800 at 345.822 kb on + strand, within MMJJ_RS01800 at 345.822 kb on + strand, within MMJJ_RS01800 at 345.824 kb on + strand, within MMJJ_RS01800 at 345.824 kb on + strand, within MMJJ_RS01800 at 345.830 kb on - strand, within MMJJ_RS01800 at 345.903 kb on + strand, within MMJJ_RS01800 at 345.992 kb on + strand, within MMJJ_RS01800 at 345.997 kb on - strand, within MMJJ_RS01800 at 345.998 kb on + strand, within MMJJ_RS01800 at 346.007 kb on - strand, within MMJJ_RS01800 at 346.007 kb on - strand, within MMJJ_RS01800 at 346.012 kb on - strand, within MMJJ_RS01800 at 346.017 kb on - strand, within MMJJ_RS01800 at 346.041 kb on + strand, within MMJJ_RS01800 at 346.170 kb on + strand, within MMJJ_RS01800 at 346.209 kb on + strand, within MMJJ_RS01800 at 346.227 kb on + strand, within MMJJ_RS01800 at 346.227 kb on + strand, within MMJJ_RS01800 at 346.227 kb on + strand, within MMJJ_RS01800 at 346.255 kb on - strand, within MMJJ_RS01800 at 346.255 kb on - strand, within MMJJ_RS01800 at 346.256 kb on + strand, within MMJJ_RS01800 at 346.258 kb on + strand, within MMJJ_RS01800 at 346.317 kb on + strand, within MMJJ_RS01800 at 346.451 kb on - strand at 346.451 kb on - strand at 346.451 kb on - strand at 346.451 kb on - strand at 346.452 kb on + strand at 346.453 kb on - strand at 346.467 kb on - strand at 346.468 kb on + strand at 346.470 kb on + strand at 346.489 kb on - strand at 346.519 kb on + strand at 346.538 kb on + strand at 346.538 kb on + strand at 346.538 kb on + strand at 346.541 kb on - strand at 346.541 kb on - strand at 346.542 kb on + strand at 346.542 kb on + strand at 346.543 kb on - strand at 346.543 kb on - strand at 346.543 kb on - strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.562 kb on + strand at 346.618 kb on - strand, within MMJJ_RS01805 at 346.619 kb on + strand, within MMJJ_RS01805 at 346.619 kb on + strand, within MMJJ_RS01805 at 346.623 kb on - strand, within MMJJ_RS01805 at 346.624 kb on + strand, within MMJJ_RS01805 at 346.624 kb on + strand, within MMJJ_RS01805 at 346.625 kb on - strand, within MMJJ_RS01805 at 346.625 kb on - strand, within MMJJ_RS01805 at 346.626 kb on + strand, within MMJJ_RS01805 at 346.626 kb on + strand, within MMJJ_RS01805 at 346.627 kb on - strand, within MMJJ_RS01805 at 346.628 kb on + strand, within MMJJ_RS01805 at 346.628 kb on + strand, within MMJJ_RS01805 at 346.628 kb on + strand, within MMJJ_RS01805 at 346.663 kb on - strand, within MMJJ_RS01805 at 346.663 kb on - strand, within MMJJ_RS01805 at 346.663 kb on - strand, within MMJJ_RS01805 at 346.663 kb on - strand, within MMJJ_RS01805 at 346.663 kb on - strand, within MMJJ_RS01805 at 346.664 kb on + strand, within MMJJ_RS01805 at 346.680 kb on - strand, within MMJJ_RS01805 at 346.680 kb on - strand, within MMJJ_RS01805 at 346.680 kb on - strand, within MMJJ_RS01805 at 346.680 kb on - strand, within MMJJ_RS01805 at 346.682 kb on - strand, within MMJJ_RS01805 at 346.715 kb on - strand, within MMJJ_RS01805 at 346.733 kb on + strand, within MMJJ_RS01805 at 346.792 kb on - strand, within MMJJ_RS01805 at 346.792 kb on - strand, within MMJJ_RS01805 at 346.793 kb on + strand, within MMJJ_RS01805 at 346.897 kb on - strand, within MMJJ_RS01805 at 346.937 kb on - strand, within MMJJ_RS01805 at 346.938 kb on + strand, within MMJJ_RS01805 at 346.992 kb on - strand, within MMJJ_RS01805 at 346.993 kb on + strand, within MMJJ_RS01805 at 347.070 kb on + strand, within MMJJ_RS01805 at 347.075 kb on - strand, within MMJJ_RS01805 at 347.075 kb on - strand, within MMJJ_RS01805 at 347.076 kb on + strand, within MMJJ_RS01805 at 347.125 kb on - strand, within MMJJ_RS01805 at 347.126 kb on + strand, within MMJJ_RS01805 at 347.165 kb on - strand, within MMJJ_RS01805 at 347.166 kb on + strand, within MMJJ_RS01805 at 347.194 kb on - strand, within MMJJ_RS01805 at 347.203 kb on - strand, within MMJJ_RS01805 at 347.204 kb on + strand, within MMJJ_RS01805 at 347.207 kb on + strand, within MMJJ_RS01805 at 347.247 kb on + strand at 347.265 kb on - strand at 347.266 kb on + strand at 347.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 344,537 + MMJJ_RS01790 0.52 -1.1 344,641 - MMJJ_RS01790 0.78 -1.8 344,681 + MMJJ_RS01790 0.88 +3.5 344,717 + -0.6 344,729 - +3.1 344,729 - -2.1 344,729 - -0.3 344,730 + -1.8 344,730 + -2.9 344,788 - +0.7 344,788 - -0.1 344,789 + +0.1 344,848 + +1.1 344,865 + MMJJ_RS01795 0.11 -2.3 344,892 + MMJJ_RS01795 0.15 +2.7 344,892 + MMJJ_RS01795 0.15 -0.7 344,892 + MMJJ_RS01795 0.15 +0.0 344,957 + MMJJ_RS01795 0.25 -1.0 345,014 + MMJJ_RS01795 0.33 -1.8 345,112 + MMJJ_RS01795 0.48 +1.2 345,157 - MMJJ_RS01795 0.55 -1.8 345,180 + MMJJ_RS01795 0.58 +1.4 345,180 + MMJJ_RS01795 0.58 -0.9 345,182 + MMJJ_RS01795 0.58 +1.2 345,210 - MMJJ_RS01795 0.63 -2.1 345,211 + MMJJ_RS01795 0.63 -0.5 345,256 - MMJJ_RS01795 0.70 +1.1 345,261 - MMJJ_RS01795 0.70 -0.1 345,271 - MMJJ_RS01795 0.72 +0.5 345,307 - MMJJ_RS01795 0.77 -2.9 345,340 - MMJJ_RS01795 0.82 +1.3 345,340 - MMJJ_RS01795 0.82 -0.7 345,341 + MMJJ_RS01795 0.82 -1.4 345,341 + MMJJ_RS01795 0.82 +1.9 345,349 + MMJJ_RS01795 0.83 -2.7 345,349 + MMJJ_RS01795 0.83 -3.4 345,354 - MMJJ_RS01795 0.84 -3.4 345,383 + MMJJ_RS01795 0.88 +0.4 345,420 + -1.2 345,474 - -1.8 345,475 + +2.6 345,482 - +0.8 345,482 - +1.5 345,484 - +0.9 345,485 + +0.9 345,485 + +0.5 345,492 - +1.1 345,501 - +1.0 345,507 + -0.5 345,508 - +0.6 345,509 + +0.1 345,509 + -1.2 345,511 + -3.0 345,511 + -1.9 345,511 + -0.9 345,522 + +1.3 345,533 + -0.5 345,572 - -1.1 345,630 - MMJJ_RS01800 0.12 +2.0 345,630 - MMJJ_RS01800 0.12 +4.2 345,631 + MMJJ_RS01800 0.12 -0.2 345,631 + MMJJ_RS01800 0.12 +1.3 345,651 - MMJJ_RS01800 0.14 +1.9 345,651 - MMJJ_RS01800 0.14 +2.6 345,651 - MMJJ_RS01800 0.14 +0.1 345,651 - MMJJ_RS01800 0.14 +1.0 345,652 + MMJJ_RS01800 0.14 -1.7 345,652 + MMJJ_RS01800 0.14 +2.6 345,652 + MMJJ_RS01800 0.14 +3.5 345,689 - MMJJ_RS01800 0.18 -1.2 345,786 + MMJJ_RS01800 0.29 -1.9 345,793 + MMJJ_RS01800 0.30 +2.9 345,793 + MMJJ_RS01800 0.30 +0.0 345,812 - MMJJ_RS01800 0.32 +0.4 345,822 + MMJJ_RS01800 0.33 -1.9 345,822 + MMJJ_RS01800 0.33 -2.6 345,824 + MMJJ_RS01800 0.33 +1.1 345,824 + MMJJ_RS01800 0.33 +1.0 345,830 - MMJJ_RS01800 0.34 -1.7 345,903 + MMJJ_RS01800 0.42 +2.3 345,992 + MMJJ_RS01800 0.51 +3.1 345,997 - MMJJ_RS01800 0.52 +1.6 345,998 + MMJJ_RS01800 0.52 +0.8 346,007 - MMJJ_RS01800 0.53 +1.2 346,007 - MMJJ_RS01800 0.53 -0.8 346,012 - MMJJ_RS01800 0.54 +0.5 346,017 - MMJJ_RS01800 0.54 +0.0 346,041 + MMJJ_RS01800 0.57 -2.7 346,170 + MMJJ_RS01800 0.71 -0.9 346,209 + MMJJ_RS01800 0.75 -1.2 346,227 + MMJJ_RS01800 0.77 +1.3 346,227 + MMJJ_RS01800 0.77 +0.7 346,227 + MMJJ_RS01800 0.77 +1.1 346,255 - MMJJ_RS01800 0.80 -1.2 346,255 - MMJJ_RS01800 0.80 -0.6 346,256 + MMJJ_RS01800 0.81 +0.3 346,258 + MMJJ_RS01800 0.81 -4.8 346,317 + MMJJ_RS01800 0.87 +2.3 346,451 - -0.5 346,451 - -1.9 346,451 - +0.0 346,451 - -0.2 346,452 + -1.9 346,453 - +2.9 346,467 - +0.8 346,468 + +0.6 346,470 + -2.1 346,489 - +0.5 346,519 + +3.1 346,538 + +1.7 346,538 + -0.5 346,538 + -0.4 346,541 - -2.3 346,541 - +2.1 346,542 + -2.3 346,542 + +1.9 346,543 - +0.6 346,543 - +3.2 346,543 - +0.6 346,544 + +0.6 346,544 + -1.4 346,544 + -1.1 346,544 + -2.0 346,562 + -0.5 346,618 - MMJJ_RS01805 0.17 +0.6 346,619 + MMJJ_RS01805 0.17 -0.6 346,619 + MMJJ_RS01805 0.17 -0.8 346,623 - MMJJ_RS01805 0.18 -0.9 346,624 + MMJJ_RS01805 0.18 +1.4 346,624 + MMJJ_RS01805 0.18 +1.2 346,625 - MMJJ_RS01805 0.18 -2.8 346,625 - MMJJ_RS01805 0.18 +1.1 346,626 + MMJJ_RS01805 0.18 +0.7 346,626 + MMJJ_RS01805 0.18 +2.5 346,627 - MMJJ_RS01805 0.18 +0.7 346,628 + MMJJ_RS01805 0.18 +0.3 346,628 + MMJJ_RS01805 0.18 -1.9 346,628 + MMJJ_RS01805 0.18 -1.5 346,663 - MMJJ_RS01805 0.23 +1.0 346,663 - MMJJ_RS01805 0.23 -0.3 346,663 - MMJJ_RS01805 0.23 +2.3 346,663 - MMJJ_RS01805 0.23 +0.7 346,663 - MMJJ_RS01805 0.23 +0.9 346,664 + MMJJ_RS01805 0.23 -3.9 346,680 - MMJJ_RS01805 0.25 +0.3 346,680 - MMJJ_RS01805 0.25 -1.5 346,680 - MMJJ_RS01805 0.25 -1.5 346,680 - MMJJ_RS01805 0.25 -2.1 346,682 - MMJJ_RS01805 0.25 -1.1 346,715 - MMJJ_RS01805 0.29 -1.3 346,733 + MMJJ_RS01805 0.31 -0.3 346,792 - MMJJ_RS01805 0.39 +1.7 346,792 - MMJJ_RS01805 0.39 -0.9 346,793 + MMJJ_RS01805 0.39 +2.9 346,897 - MMJJ_RS01805 0.52 +0.3 346,937 - MMJJ_RS01805 0.57 -2.4 346,938 + MMJJ_RS01805 0.57 +3.8 346,992 - MMJJ_RS01805 0.63 +0.8 346,993 + MMJJ_RS01805 0.63 -0.1 347,070 + MMJJ_RS01805 0.73 -1.0 347,075 - MMJJ_RS01805 0.74 +0.5 347,075 - MMJJ_RS01805 0.74 -1.5 347,076 + MMJJ_RS01805 0.74 -0.8 347,125 - MMJJ_RS01805 0.80 -1.8 347,126 + MMJJ_RS01805 0.80 -2.8 347,165 - MMJJ_RS01805 0.85 +2.2 347,166 + MMJJ_RS01805 0.85 -2.1 347,194 - MMJJ_RS01805 0.88 +0.3 347,203 - MMJJ_RS01805 0.89 +1.1 347,204 + MMJJ_RS01805 0.90 -3.1 347,207 + MMJJ_RS01805 0.90 +0.8 347,247 + -2.1 347,265 - +2.9 347,266 + +0.2 347,278 - -1.1
Or see this region's nucleotide sequence