Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01720 and MMJJ_RS01725 are separated by 215 nucleotides MMJJ_RS01725 and MMJJ_RS01730 are separated by 2 nucleotides MMJJ_RS01730 and MMJJ_RS01735 are separated by 154 nucleotides MMJJ_RS01735 and MMJJ_RS01740 are separated by 133 nucleotides
MMJJ_RS01720: MMJJ_RS01720 - hypothetical protein, at 332,644 to 333,876
_RS01720
MMJJ_RS01725: MMJJ_RS01725 - ABC transporter ATP-binding protein, at 334,092 to 334,817
_RS01725
MMJJ_RS01730: MMJJ_RS01730 - ABC transporter permease, at 334,820 to 336,013
_RS01730
MMJJ_RS01735: MMJJ_RS01735 - rubrerythrin family protein, at 336,168 to 336,758
_RS01735
MMJJ_RS01740: MMJJ_RS01740 - ATP-binding protein, at 336,892 to 338,058
_RS01740
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 333.838 kb on - strand at 333.845 kb on + strand at 333.845 kb on + strand at 333.847 kb on - strand at 333.850 kb on - strand at 333.880 kb on + strand at 333.911 kb on - strand at 333.927 kb on + strand at 333.928 kb on - strand at 333.928 kb on - strand at 333.928 kb on - strand at 333.929 kb on + strand at 333.929 kb on + strand at 333.929 kb on + strand at 333.931 kb on - strand at 333.931 kb on - strand at 333.932 kb on + strand at 333.935 kb on - strand at 333.942 kb on - strand at 333.942 kb on - strand at 333.943 kb on + strand at 333.943 kb on + strand at 333.943 kb on + strand at 333.973 kb on - strand at 334.000 kb on - strand at 334.001 kb on + strand at 334.023 kb on + strand at 334.035 kb on + strand at 334.050 kb on + strand at 334.063 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.093 kb on - strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.094 kb on + strand at 334.145 kb on - strand at 334.190 kb on - strand, within MMJJ_RS01725 at 334.190 kb on - strand, within MMJJ_RS01725 at 334.196 kb on + strand, within MMJJ_RS01725 at 334.207 kb on - strand, within MMJJ_RS01725 at 334.208 kb on + strand, within MMJJ_RS01725 at 334.228 kb on + strand, within MMJJ_RS01725 at 334.252 kb on + strand, within MMJJ_RS01725 at 334.281 kb on + strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.400 kb on - strand, within MMJJ_RS01725 at 334.402 kb on - strand, within MMJJ_RS01725 at 334.418 kb on - strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.426 kb on + strand, within MMJJ_RS01725 at 334.620 kb on - strand, within MMJJ_RS01725 at 334.710 kb on - strand, within MMJJ_RS01725 at 334.711 kb on + strand, within MMJJ_RS01725 at 334.780 kb on - strand at 334.791 kb on - strand at 334.809 kb on - strand at 334.809 kb on - strand at 334.810 kb on + strand at 334.813 kb on + strand at 334.813 kb on + strand at 334.817 kb on - strand at 334.899 kb on + strand at 334.911 kb on + strand at 334.984 kb on + strand at 335.003 kb on - strand, within MMJJ_RS01730 at 335.015 kb on - strand, within MMJJ_RS01730 at 335.070 kb on + strand, within MMJJ_RS01730 at 335.141 kb on + strand, within MMJJ_RS01730 at 335.214 kb on + strand, within MMJJ_RS01730 at 335.220 kb on + strand, within MMJJ_RS01730 at 335.234 kb on + strand, within MMJJ_RS01730 at 335.267 kb on - strand, within MMJJ_RS01730 at 335.336 kb on - strand, within MMJJ_RS01730 at 335.337 kb on + strand, within MMJJ_RS01730 at 335.360 kb on + strand, within MMJJ_RS01730 at 335.365 kb on - strand, within MMJJ_RS01730 at 335.365 kb on - strand, within MMJJ_RS01730 at 335.376 kb on - strand, within MMJJ_RS01730 at 335.377 kb on + strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.423 kb on - strand, within MMJJ_RS01730 at 335.467 kb on - strand, within MMJJ_RS01730 at 335.489 kb on + strand, within MMJJ_RS01730 at 335.519 kb on - strand, within MMJJ_RS01730 at 335.596 kb on - strand, within MMJJ_RS01730 at 335.597 kb on + strand, within MMJJ_RS01730 at 335.597 kb on + strand, within MMJJ_RS01730 at 335.613 kb on - strand, within MMJJ_RS01730 at 335.637 kb on + strand, within MMJJ_RS01730 at 335.643 kb on - strand, within MMJJ_RS01730 at 335.644 kb on + strand, within MMJJ_RS01730 at 335.679 kb on - strand, within MMJJ_RS01730 at 335.800 kb on - strand, within MMJJ_RS01730 at 335.834 kb on + strand, within MMJJ_RS01730 at 335.905 kb on - strand at 335.905 kb on - strand at 335.909 kb on - strand at 335.910 kb on + strand at 335.910 kb on + strand at 335.910 kb on + strand at 335.924 kb on - strand at 335.972 kb on - strand at 335.972 kb on - strand at 335.973 kb on + strand at 336.053 kb on + strand at 336.067 kb on + strand at 336.081 kb on + strand at 336.090 kb on + strand at 336.098 kb on - strand at 336.099 kb on + strand at 336.111 kb on + strand at 336.111 kb on + strand at 336.112 kb on - strand at 336.113 kb on + strand at 336.116 kb on + strand at 336.116 kb on + strand at 336.149 kb on + strand at 336.170 kb on + strand at 336.173 kb on + strand at 336.196 kb on - strand at 336.196 kb on - strand at 336.196 kb on - strand at 336.196 kb on - strand at 336.197 kb on + strand at 336.197 kb on + strand at 336.249 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.282 kb on - strand, within MMJJ_RS01735 at 336.283 kb on + strand, within MMJJ_RS01735 at 336.283 kb on + strand, within MMJJ_RS01735 at 336.330 kb on - strand, within MMJJ_RS01735 at 336.331 kb on + strand, within MMJJ_RS01735 at 336.382 kb on + strand, within MMJJ_RS01735 at 336.493 kb on + strand, within MMJJ_RS01735 at 336.497 kb on - strand, within MMJJ_RS01735 at 336.497 kb on - strand, within MMJJ_RS01735 at 336.497 kb on - strand, within MMJJ_RS01735 at 336.506 kb on + strand, within MMJJ_RS01735 at 336.506 kb on + strand, within MMJJ_RS01735 at 336.512 kb on - strand, within MMJJ_RS01735 at 336.676 kb on - strand, within MMJJ_RS01735 at 336.683 kb on - strand, within MMJJ_RS01735 at 336.683 kb on - strand, within MMJJ_RS01735 at 336.684 kb on + strand, within MMJJ_RS01735 at 336.685 kb on - strand, within MMJJ_RS01735 at 336.690 kb on + strand, within MMJJ_RS01735 at 336.690 kb on + strand, within MMJJ_RS01735 at 336.770 kb on - strand at 336.772 kb on - strand at 336.773 kb on + strand at 336.773 kb on + strand at 336.780 kb on - strand at 336.781 kb on + strand at 336.786 kb on + strand at 336.794 kb on - strand at 336.795 kb on + strand at 336.795 kb on + strand at 336.796 kb on - strand at 336.798 kb on - strand at 336.799 kb on + strand at 336.801 kb on - strand at 336.801 kb on - strand at 336.824 kb on - strand at 336.824 kb on - strand at 336.825 kb on + strand at 336.825 kb on + strand at 336.825 kb on + strand at 336.838 kb on + strand at 336.887 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 333,838 - -1.4 333,845 + -1.4 333,845 + +1.3 333,847 - -1.0 333,850 - -0.6 333,880 + -1.9 333,911 - -4.2 333,927 + -0.5 333,928 - +3.3 333,928 - -1.8 333,928 - +1.2 333,929 + +3.6 333,929 + +0.4 333,929 + -1.3 333,931 - -0.5 333,931 - -1.5 333,932 + -1.9 333,935 - +0.0 333,942 - +1.2 333,942 - -2.8 333,943 + -1.0 333,943 + -1.0 333,943 + -0.2 333,973 - +1.1 334,000 - -1.3 334,001 + +0.1 334,023 + -1.8 334,035 + +2.1 334,050 + +1.5 334,063 - +3.3 334,093 - +1.0 334,093 - -0.5 334,093 - -2.1 334,093 - +1.0 334,094 + +1.1 334,094 + -2.7 334,094 + +2.6 334,094 + -2.8 334,094 + -3.0 334,145 - -0.5 334,190 - MMJJ_RS01725 0.13 +0.3 334,190 - MMJJ_RS01725 0.13 +0.4 334,196 + MMJJ_RS01725 0.14 -3.9 334,207 - MMJJ_RS01725 0.16 +2.4 334,208 + MMJJ_RS01725 0.16 +2.5 334,228 + MMJJ_RS01725 0.19 +0.3 334,252 + MMJJ_RS01725 0.22 +0.2 334,281 + MMJJ_RS01725 0.26 -3.0 334,400 - MMJJ_RS01725 0.42 +0.6 334,400 - MMJJ_RS01725 0.42 +1.8 334,400 - MMJJ_RS01725 0.42 +1.6 334,402 - MMJJ_RS01725 0.43 -3.3 334,418 - MMJJ_RS01725 0.45 +1.5 334,426 + MMJJ_RS01725 0.46 +2.0 334,426 + MMJJ_RS01725 0.46 -1.9 334,426 + MMJJ_RS01725 0.46 -1.7 334,620 - MMJJ_RS01725 0.73 -0.3 334,710 - MMJJ_RS01725 0.85 -1.5 334,711 + MMJJ_RS01725 0.85 -1.5 334,780 - -1.7 334,791 - +0.2 334,809 - -0.5 334,809 - +1.2 334,810 + -4.0 334,813 + +3.0 334,813 + -2.4 334,817 - -2.2 334,899 + +2.3 334,911 + +2.8 334,984 + +0.1 335,003 - MMJJ_RS01730 0.15 +1.6 335,015 - MMJJ_RS01730 0.16 +1.3 335,070 + MMJJ_RS01730 0.21 +1.2 335,141 + MMJJ_RS01730 0.27 -0.6 335,214 + MMJJ_RS01730 0.33 +4.4 335,220 + MMJJ_RS01730 0.34 +2.1 335,234 + MMJJ_RS01730 0.35 -0.1 335,267 - MMJJ_RS01730 0.37 +1.8 335,336 - MMJJ_RS01730 0.43 -1.2 335,337 + MMJJ_RS01730 0.43 -2.5 335,360 + MMJJ_RS01730 0.45 -0.8 335,365 - MMJJ_RS01730 0.46 -1.9 335,365 - MMJJ_RS01730 0.46 -1.5 335,376 - MMJJ_RS01730 0.47 +2.3 335,377 + MMJJ_RS01730 0.47 +0.2 335,423 - MMJJ_RS01730 0.51 +2.8 335,423 - MMJJ_RS01730 0.51 +3.1 335,423 - MMJJ_RS01730 0.51 +0.2 335,467 - MMJJ_RS01730 0.54 +1.9 335,489 + MMJJ_RS01730 0.56 -3.4 335,519 - MMJJ_RS01730 0.59 +1.1 335,596 - MMJJ_RS01730 0.65 +1.4 335,597 + MMJJ_RS01730 0.65 +1.3 335,597 + MMJJ_RS01730 0.65 -1.3 335,613 - MMJJ_RS01730 0.66 +0.0 335,637 + MMJJ_RS01730 0.68 -0.6 335,643 - MMJJ_RS01730 0.69 -0.3 335,644 + MMJJ_RS01730 0.69 -2.1 335,679 - MMJJ_RS01730 0.72 -1.2 335,800 - MMJJ_RS01730 0.82 +2.4 335,834 + MMJJ_RS01730 0.85 -2.4 335,905 - -1.7 335,905 - +2.0 335,909 - -0.5 335,910 + +0.5 335,910 + +0.2 335,910 + +1.0 335,924 - -1.2 335,972 - -1.2 335,972 - +2.3 335,973 + +2.6 336,053 + -1.4 336,067 + -0.3 336,081 + +0.8 336,090 + +0.9 336,098 - -3.1 336,099 + +0.1 336,111 + +0.9 336,111 + -1.1 336,112 - +1.5 336,113 + +1.3 336,116 + +3.5 336,116 + -1.2 336,149 + -1.8 336,170 + -1.5 336,173 + -1.1 336,196 - -2.2 336,196 - +0.8 336,196 - +1.8 336,196 - -1.6 336,197 + -0.1 336,197 + -1.7 336,249 - MMJJ_RS01735 0.14 +1.2 336,282 - MMJJ_RS01735 0.19 +1.5 336,282 - MMJJ_RS01735 0.19 -3.2 336,282 - MMJJ_RS01735 0.19 -1.9 336,282 - MMJJ_RS01735 0.19 -0.7 336,282 - MMJJ_RS01735 0.19 +0.7 336,283 + MMJJ_RS01735 0.19 +1.2 336,283 + MMJJ_RS01735 0.19 -0.8 336,330 - MMJJ_RS01735 0.27 +3.2 336,331 + MMJJ_RS01735 0.28 +3.5 336,382 + MMJJ_RS01735 0.36 -2.4 336,493 + MMJJ_RS01735 0.55 +0.5 336,497 - MMJJ_RS01735 0.56 -0.8 336,497 - MMJJ_RS01735 0.56 +1.5 336,497 - MMJJ_RS01735 0.56 -1.2 336,506 + MMJJ_RS01735 0.57 -0.7 336,506 + MMJJ_RS01735 0.57 +2.6 336,512 - MMJJ_RS01735 0.58 +1.0 336,676 - MMJJ_RS01735 0.86 -2.5 336,683 - MMJJ_RS01735 0.87 -2.8 336,683 - MMJJ_RS01735 0.87 +1.8 336,684 + MMJJ_RS01735 0.87 -1.1 336,685 - MMJJ_RS01735 0.87 -2.1 336,690 + MMJJ_RS01735 0.88 -3.8 336,690 + MMJJ_RS01735 0.88 -0.4 336,770 - -0.5 336,772 - -1.1 336,773 + -3.5 336,773 + -1.7 336,780 - +0.4 336,781 + -2.9 336,786 + +1.8 336,794 - +2.9 336,795 + +1.1 336,795 + +0.0 336,796 - +2.8 336,798 - +1.1 336,799 + +1.7 336,801 - -1.7 336,801 - +1.9 336,824 - +2.0 336,824 - +1.6 336,825 + +3.0 336,825 + -0.2 336,825 + -0.4 336,838 + -1.5 336,887 + -1.4
Or see this region's nucleotide sequence