Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01685 and MMJJ_RS01690 are separated by 142 nucleotides MMJJ_RS01690 and MMJJ_RS01695 are separated by 147 nucleotides MMJJ_RS01695 and MMJJ_RS01700 are separated by 39 nucleotides MMJJ_RS01700 and MMJJ_RS01705 are separated by 19 nucleotides
MMJJ_RS01685: MMJJ_RS01685 - DUF354 domain-containing protein, at 326,505 to 327,518
_RS01685
MMJJ_RS01690: MMJJ_RS01690 - methanogenesis marker 12 protein, at 327,661 to 328,638
_RS01690
MMJJ_RS01695: MMJJ_RS01695 - 50S ribosomal protein L7Ae, at 328,786 to 329,139
_RS01695
MMJJ_RS01700: MMJJ_RS01700 - 30S ribosomal protein S28e, at 329,179 to 329,409
_RS01700
MMJJ_RS01705: MMJJ_RS01705 - 50S ribosomal protein L24e, at 329,429 to 329,617
_RS01705
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 326.778 kb on - strand, within MMJJ_RS01685 at 327.161 kb on - strand, within MMJJ_RS01685 at 327.379 kb on - strand at 327.530 kb on - strand at 327.595 kb on - strand at 327.600 kb on - strand at 327.600 kb on - strand at 327.615 kb on - strand at 327.615 kb on - strand at 327.615 kb on - strand at 327.616 kb on + strand at 327.617 kb on - strand at 327.617 kb on - strand at 327.617 kb on - strand at 327.617 kb on - strand at 327.618 kb on + strand at 327.618 kb on + strand at 327.627 kb on - strand at 327.628 kb on + strand at 327.638 kb on - strand at 327.641 kb on - strand at 327.642 kb on + strand at 327.660 kb on - strand at 327.970 kb on + strand, within MMJJ_RS01690 at 328.088 kb on + strand, within MMJJ_RS01690 at 328.088 kb on + strand, within MMJJ_RS01690 at 328.209 kb on + strand, within MMJJ_RS01690 at 328.239 kb on - strand, within MMJJ_RS01690 at 328.240 kb on + strand, within MMJJ_RS01690 at 328.246 kb on + strand, within MMJJ_RS01690 at 328.316 kb on + strand, within MMJJ_RS01690 at 328.354 kb on + strand, within MMJJ_RS01690 at 328.566 kb on + strand at 328.595 kb on - strand at 328.661 kb on - strand at 328.661 kb on - strand at 328.675 kb on - strand at 328.796 kb on + strand at 329.602 kb on - strand at 329.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 326,778 - MMJJ_RS01685 0.27 -1.5 327,161 - MMJJ_RS01685 0.65 -1.2 327,379 - -0.5 327,530 - -1.2 327,595 - +0.1 327,600 - +2.5 327,600 - +4.3 327,615 - -3.5 327,615 - +2.4 327,615 - -1.5 327,616 + -0.9 327,617 - -2.8 327,617 - -1.1 327,617 - -1.9 327,617 - -1.4 327,618 + -2.1 327,618 + +1.1 327,627 - -2.7 327,628 + +2.6 327,638 - -3.4 327,641 - -1.8 327,642 + -0.9 327,660 - -1.5 327,970 + MMJJ_RS01690 0.32 -1.7 328,088 + MMJJ_RS01690 0.44 -1.5 328,088 + MMJJ_RS01690 0.44 -1.7 328,209 + MMJJ_RS01690 0.56 -0.7 328,239 - MMJJ_RS01690 0.59 -0.9 328,240 + MMJJ_RS01690 0.59 -0.5 328,246 + MMJJ_RS01690 0.60 -1.2 328,316 + MMJJ_RS01690 0.67 +1.4 328,354 + MMJJ_RS01690 0.71 +0.1 328,566 + -0.5 328,595 - -1.5 328,661 - -0.9 328,661 - +1.5 328,675 - -0.9 328,796 + -1.2 329,602 - +1.8 329,615 - +1.2
Or see this region's nucleotide sequence