Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01595 and MMJJ_RS01600 are separated by 91 nucleotides MMJJ_RS01600 and MMJJ_RS01605 are separated by 101 nucleotides MMJJ_RS01605 and MMJJ_RS01610 are separated by 75 nucleotides
MMJJ_RS01595: MMJJ_RS01595 - U32 family peptidase, at 310,095 to 311,306
_RS01595
MMJJ_RS01600: MMJJ_RS01600 - radical SAM protein, at 311,398 to 312,291
_RS01600
MMJJ_RS01605: MMJJ_RS01605 - ACT domain-containing protein, at 312,393 to 312,665
_RS01605
MMJJ_RS01610: MMJJ_RS01610 - methanogenesis marker 17 protein, at 312,741 to 313,292
_RS01610
Position (kb) 311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 310.512 kb on + strand, within MMJJ_RS01595 at 310.553 kb on + strand, within MMJJ_RS01595 at 310.556 kb on - strand, within MMJJ_RS01595 at 310.568 kb on + strand, within MMJJ_RS01595 at 310.623 kb on - strand, within MMJJ_RS01595 at 310.639 kb on - strand, within MMJJ_RS01595 at 310.672 kb on - strand, within MMJJ_RS01595 at 310.703 kb on + strand, within MMJJ_RS01595 at 310.732 kb on - strand, within MMJJ_RS01595 at 310.733 kb on + strand, within MMJJ_RS01595 at 310.801 kb on - strand, within MMJJ_RS01595 at 310.802 kb on + strand, within MMJJ_RS01595 at 310.852 kb on + strand, within MMJJ_RS01595 at 310.912 kb on + strand, within MMJJ_RS01595 at 310.956 kb on - strand, within MMJJ_RS01595 at 310.957 kb on + strand, within MMJJ_RS01595 at 311.014 kb on - strand, within MMJJ_RS01595 at 311.014 kb on - strand, within MMJJ_RS01595 at 311.019 kb on - strand, within MMJJ_RS01595 at 311.047 kb on + strand, within MMJJ_RS01595 at 311.079 kb on - strand, within MMJJ_RS01595 at 311.162 kb on - strand, within MMJJ_RS01595 at 311.162 kb on - strand, within MMJJ_RS01595 at 311.219 kb on - strand at 311.286 kb on - strand at 311.286 kb on - strand at 311.293 kb on - strand at 311.293 kb on - strand at 311.294 kb on + strand at 311.294 kb on + strand at 311.304 kb on - strand at 311.305 kb on + strand at 311.305 kb on + strand at 311.316 kb on - strand at 311.335 kb on - strand at 311.338 kb on - strand at 311.338 kb on - strand at 311.338 kb on - strand at 311.357 kb on - strand at 311.364 kb on + strand at 311.364 kb on + strand at 311.370 kb on - strand at 311.409 kb on - strand at 311.410 kb on + strand at 311.433 kb on - strand at 311.621 kb on - strand, within MMJJ_RS01600 at 311.775 kb on + strand, within MMJJ_RS01600 at 311.885 kb on + strand, within MMJJ_RS01600 at 311.997 kb on + strand, within MMJJ_RS01600 at 312.094 kb on - strand, within MMJJ_RS01600 at 312.134 kb on - strand, within MMJJ_RS01600 at 312.144 kb on + strand at 312.144 kb on + strand, within MMJJ_RS01600 at 312.216 kb on - strand at 312.217 kb on + strand at 312.249 kb on - strand at 312.265 kb on - strand at 312.554 kb on + strand, within MMJJ_RS01605 at 312.615 kb on + strand, within MMJJ_RS01605 at 312.687 kb on + strand at 312.726 kb on + strand at 313.153 kb on - strand, within MMJJ_RS01610 at 313.193 kb on - strand, within MMJJ_RS01610 at 313.268 kb on - strand at 313.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 310,512 + MMJJ_RS01595 0.34 +2.1 310,553 + MMJJ_RS01595 0.38 +0.6 310,556 - MMJJ_RS01595 0.38 -2.9 310,568 + MMJJ_RS01595 0.39 +2.6 310,623 - MMJJ_RS01595 0.44 +1.9 310,639 - MMJJ_RS01595 0.45 -0.3 310,672 - MMJJ_RS01595 0.48 +2.7 310,703 + MMJJ_RS01595 0.50 -2.5 310,732 - MMJJ_RS01595 0.53 +1.1 310,733 + MMJJ_RS01595 0.53 -2.0 310,801 - MMJJ_RS01595 0.58 -2.0 310,802 + MMJJ_RS01595 0.58 +2.7 310,852 + MMJJ_RS01595 0.62 -1.2 310,912 + MMJJ_RS01595 0.67 -0.4 310,956 - MMJJ_RS01595 0.71 -2.2 310,957 + MMJJ_RS01595 0.71 +4.7 311,014 - MMJJ_RS01595 0.76 +1.6 311,014 - MMJJ_RS01595 0.76 +0.2 311,019 - MMJJ_RS01595 0.76 -3.2 311,047 + MMJJ_RS01595 0.79 -0.4 311,079 - MMJJ_RS01595 0.81 -1.9 311,162 - MMJJ_RS01595 0.88 -0.9 311,162 - MMJJ_RS01595 0.88 +3.6 311,219 - +0.2 311,286 - +1.6 311,286 - -1.5 311,293 - +2.5 311,293 - +0.8 311,294 + -1.7 311,294 + +1.9 311,304 - +0.4 311,305 + +2.5 311,305 + +0.2 311,316 - +2.4 311,335 - -0.2 311,338 - +0.4 311,338 - +0.1 311,338 - +3.1 311,357 - -1.2 311,364 + +1.1 311,364 + -1.7 311,370 - +0.1 311,409 - -0.5 311,410 + -1.2 311,433 - -0.9 311,621 - MMJJ_RS01600 0.25 +1.1 311,775 + MMJJ_RS01600 0.42 -0.5 311,885 + MMJJ_RS01600 0.54 +2.1 311,997 + MMJJ_RS01600 0.67 +0.1 312,094 - MMJJ_RS01600 0.78 +0.7 312,134 - MMJJ_RS01600 0.82 -0.5 312,144 + +1.1 312,144 + MMJJ_RS01600 0.83 -0.9 312,216 - -1.3 312,217 + -3.0 312,249 - -1.5 312,265 - -2.2 312,554 + MMJJ_RS01605 0.59 +0.1 312,615 + MMJJ_RS01605 0.81 -0.5 312,687 + +0.7 312,726 + -0.3 313,153 - MMJJ_RS01610 0.75 +0.1 313,193 - MMJJ_RS01610 0.82 -0.5 313,268 - +0.1 313,285 - -0.5
Or see this region's nucleotide sequence