Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01555 and MMJJ_RS01560 are separated by 62 nucleotides MMJJ_RS01560 and MMJJ_RS01565 are separated by 43 nucleotides MMJJ_RS01565 and MMJJ_RS01570 are separated by 27 nucleotides
MMJJ_RS01555: MMJJ_RS01555 - Na/Pi cotransporter family protein, at 302,418 to 304,043
_RS01555
MMJJ_RS01560: MMJJ_RS01560 - DUF2115 domain-containing protein, at 304,106 to 304,594
_RS01560
MMJJ_RS01565: MMJJ_RS01565 - TIGR00267 family protein, at 304,638 to 305,198
_RS01565
MMJJ_RS01570: MMJJ_RS01570 - SulP family inorganic anion transporter, at 305,226 to 306,845
_RS01570
Position (kb) 304
305
306 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 303.648 kb on + strand, within MMJJ_RS01555 at 303.649 kb on - strand, within MMJJ_RS01555 at 303.649 kb on - strand, within MMJJ_RS01555 at 303.650 kb on + strand, within MMJJ_RS01555 at 303.653 kb on - strand, within MMJJ_RS01555 at 303.659 kb on - strand, within MMJJ_RS01555 at 303.660 kb on + strand, within MMJJ_RS01555 at 303.660 kb on + strand, within MMJJ_RS01555 at 303.660 kb on + strand, within MMJJ_RS01555 at 303.701 kb on + strand, within MMJJ_RS01555 at 303.701 kb on + strand, within MMJJ_RS01555 at 303.701 kb on + strand, within MMJJ_RS01555 at 303.701 kb on + strand, within MMJJ_RS01555 at 303.718 kb on - strand, within MMJJ_RS01555 at 303.741 kb on + strand, within MMJJ_RS01555 at 303.780 kb on + strand, within MMJJ_RS01555 at 303.785 kb on + strand, within MMJJ_RS01555 at 303.787 kb on - strand, within MMJJ_RS01555 at 303.788 kb on + strand, within MMJJ_RS01555 at 303.788 kb on + strand, within MMJJ_RS01555 at 303.797 kb on + strand, within MMJJ_RS01555 at 303.808 kb on - strand, within MMJJ_RS01555 at 303.809 kb on + strand, within MMJJ_RS01555 at 303.850 kb on - strand, within MMJJ_RS01555 at 304.051 kb on - strand at 304.087 kb on - strand at 304.087 kb on - strand at 304.088 kb on + strand at 304.088 kb on + strand at 304.127 kb on + strand at 304.498 kb on - strand, within MMJJ_RS01560 at 304.551 kb on - strand at 304.620 kb on - strand at 304.620 kb on - strand at 304.628 kb on - strand at 304.628 kb on - strand at 304.628 kb on - strand at 304.628 kb on - strand at 304.629 kb on + strand at 304.629 kb on + strand at 304.631 kb on - strand at 304.635 kb on - strand at 304.635 kb on - strand at 304.636 kb on + strand at 304.636 kb on + strand at 304.636 kb on + strand at 304.648 kb on + strand at 304.786 kb on + strand, within MMJJ_RS01565 at 304.820 kb on - strand, within MMJJ_RS01565 at 304.873 kb on - strand, within MMJJ_RS01565 at 304.874 kb on + strand, within MMJJ_RS01565 at 304.874 kb on + strand, within MMJJ_RS01565 at 304.886 kb on + strand, within MMJJ_RS01565 at 304.987 kb on + strand, within MMJJ_RS01565 at 305.016 kb on - strand, within MMJJ_RS01565 at 305.018 kb on - strand, within MMJJ_RS01565 at 305.025 kb on - strand, within MMJJ_RS01565 at 305.027 kb on - strand, within MMJJ_RS01565 at 305.063 kb on - strand, within MMJJ_RS01565 at 305.064 kb on + strand, within MMJJ_RS01565 at 305.064 kb on + strand, within MMJJ_RS01565 at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.146 kb on - strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.147 kb on + strand at 305.189 kb on - strand at 305.200 kb on + strand at 305.214 kb on - strand at 305.228 kb on + strand at 305.228 kb on + strand at 305.264 kb on - strand at 305.276 kb on - strand at 305.277 kb on + strand at 305.283 kb on - strand at 305.284 kb on + strand at 305.288 kb on - strand at 305.307 kb on - strand at 305.363 kb on - strand at 305.364 kb on + strand at 305.365 kb on - strand at 305.365 kb on - strand at 305.366 kb on + strand at 305.366 kb on + strand at 305.382 kb on + strand at 305.410 kb on - strand, within MMJJ_RS01570 at 305.433 kb on - strand, within MMJJ_RS01570 at 305.434 kb on + strand, within MMJJ_RS01570 at 305.470 kb on + strand, within MMJJ_RS01570 at 305.521 kb on - strand, within MMJJ_RS01570 at 305.521 kb on - strand, within MMJJ_RS01570 at 305.522 kb on + strand, within MMJJ_RS01570 at 305.522 kb on + strand, within MMJJ_RS01570 at 305.522 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.524 kb on + strand, within MMJJ_RS01570 at 305.540 kb on - strand, within MMJJ_RS01570 at 305.541 kb on + strand, within MMJJ_RS01570 at 305.559 kb on - strand, within MMJJ_RS01570 at 305.560 kb on + strand, within MMJJ_RS01570 at 305.560 kb on + strand, within MMJJ_RS01570 at 305.599 kb on + strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.603 kb on - strand, within MMJJ_RS01570 at 305.604 kb on + strand, within MMJJ_RS01570 at 305.634 kb on - strand, within MMJJ_RS01570 at 305.637 kb on - strand, within MMJJ_RS01570 at 305.666 kb on - strand, within MMJJ_RS01570 at 305.667 kb on + strand, within MMJJ_RS01570 at 305.711 kb on - strand, within MMJJ_RS01570 at 305.712 kb on + strand, within MMJJ_RS01570 at 305.733 kb on - strand, within MMJJ_RS01570 at 305.785 kb on + strand, within MMJJ_RS01570 at 305.799 kb on - strand, within MMJJ_RS01570 at 305.800 kb on + strand, within MMJJ_RS01570 at 305.804 kb on - strand, within MMJJ_RS01570 at 305.804 kb on - strand, within MMJJ_RS01570 at 305.804 kb on - strand, within MMJJ_RS01570 at 305.805 kb on + strand, within MMJJ_RS01570 at 305.805 kb on + strand, within MMJJ_RS01570 at 305.809 kb on + strand, within MMJJ_RS01570 at 305.817 kb on - strand, within MMJJ_RS01570 at 305.820 kb on - strand, within MMJJ_RS01570 at 305.820 kb on - strand, within MMJJ_RS01570 at 305.868 kb on + strand, within MMJJ_RS01570 at 305.868 kb on + strand, within MMJJ_RS01570 at 305.871 kb on - strand, within MMJJ_RS01570 at 305.872 kb on + strand, within MMJJ_RS01570 at 305.951 kb on - strand, within MMJJ_RS01570 at 305.951 kb on - strand, within MMJJ_RS01570 at 305.951 kb on - strand, within MMJJ_RS01570 at 305.963 kb on - strand, within MMJJ_RS01570 at 305.997 kb on - strand, within MMJJ_RS01570 at 306.003 kb on - strand, within MMJJ_RS01570 at 306.003 kb on - strand, within MMJJ_RS01570 at 306.025 kb on + strand, within MMJJ_RS01570 at 306.069 kb on + strand, within MMJJ_RS01570 at 306.174 kb on - strand, within MMJJ_RS01570 at 306.185 kb on + strand, within MMJJ_RS01570 at 306.194 kb on - strand, within MMJJ_RS01570 at 306.194 kb on - strand, within MMJJ_RS01570 at 306.195 kb on + strand, within MMJJ_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 303,648 + MMJJ_RS01555 0.76 -2.0 303,649 - MMJJ_RS01555 0.76 +0.1 303,649 - MMJJ_RS01555 0.76 +0.1 303,650 + MMJJ_RS01555 0.76 +0.5 303,653 - MMJJ_RS01555 0.76 +1.1 303,659 - MMJJ_RS01555 0.76 -0.3 303,660 + MMJJ_RS01555 0.76 -2.5 303,660 + MMJJ_RS01555 0.76 -0.4 303,660 + MMJJ_RS01555 0.76 -0.6 303,701 + MMJJ_RS01555 0.79 +0.6 303,701 + MMJJ_RS01555 0.79 -2.5 303,701 + MMJJ_RS01555 0.79 -0.5 303,701 + MMJJ_RS01555 0.79 +1.1 303,718 - MMJJ_RS01555 0.80 +0.1 303,741 + MMJJ_RS01555 0.81 -0.5 303,780 + MMJJ_RS01555 0.84 +2.0 303,785 + MMJJ_RS01555 0.84 -0.7 303,787 - MMJJ_RS01555 0.84 -1.1 303,788 + MMJJ_RS01555 0.84 +0.4 303,788 + MMJJ_RS01555 0.84 +0.8 303,797 + MMJJ_RS01555 0.85 -0.9 303,808 - MMJJ_RS01555 0.85 +0.1 303,809 + MMJJ_RS01555 0.86 +1.4 303,850 - MMJJ_RS01555 0.88 -2.1 304,051 - +0.5 304,087 - +1.6 304,087 - +2.9 304,088 + +1.9 304,088 + +2.2 304,127 + -1.2 304,498 - MMJJ_RS01560 0.80 -0.5 304,551 - -1.5 304,620 - -2.6 304,620 - -2.6 304,628 - +2.1 304,628 - +2.7 304,628 - +2.2 304,628 - +0.9 304,629 + +0.1 304,629 + +1.8 304,631 - -0.5 304,635 - +0.1 304,635 - -1.4 304,636 + -1.6 304,636 + -0.9 304,636 + -2.6 304,648 + -0.5 304,786 + MMJJ_RS01565 0.26 -0.0 304,820 - MMJJ_RS01565 0.32 +3.0 304,873 - MMJJ_RS01565 0.42 -2.1 304,874 + MMJJ_RS01565 0.42 +0.7 304,874 + MMJJ_RS01565 0.42 -0.1 304,886 + MMJJ_RS01565 0.44 +2.2 304,987 + MMJJ_RS01565 0.62 -1.4 305,016 - MMJJ_RS01565 0.67 +2.0 305,018 - MMJJ_RS01565 0.68 +1.5 305,025 - MMJJ_RS01565 0.69 +2.3 305,027 - MMJJ_RS01565 0.69 -0.5 305,063 - MMJJ_RS01565 0.76 +0.8 305,064 + MMJJ_RS01565 0.76 +2.7 305,064 + MMJJ_RS01565 0.76 -1.6 305,146 - +3.3 305,146 - +1.1 305,146 - +2.2 305,146 - +0.0 305,146 - +1.9 305,146 - +1.4 305,147 + +0.4 305,147 + +0.2 305,147 + +1.9 305,147 + -0.2 305,147 + -1.2 305,189 - +2.7 305,200 + +0.1 305,214 - +0.8 305,228 + +2.1 305,228 + -2.6 305,264 - -1.2 305,276 - +2.0 305,277 + +2.3 305,283 - -0.8 305,284 + +4.3 305,288 - -3.6 305,307 - -1.7 305,363 - -1.1 305,364 + +1.1 305,365 - +1.4 305,365 - +2.3 305,366 + -2.4 305,366 + -0.9 305,382 + +3.3 305,410 - MMJJ_RS01570 0.11 -2.7 305,433 - MMJJ_RS01570 0.13 +2.5 305,434 + MMJJ_RS01570 0.13 +5.3 305,470 + MMJJ_RS01570 0.15 -1.6 305,521 - MMJJ_RS01570 0.18 -0.4 305,521 - MMJJ_RS01570 0.18 +0.2 305,522 + MMJJ_RS01570 0.18 -0.4 305,522 + MMJJ_RS01570 0.18 -2.4 305,522 + MMJJ_RS01570 0.18 +1.9 305,524 + MMJJ_RS01570 0.18 +0.1 305,524 + MMJJ_RS01570 0.18 +0.0 305,524 + MMJJ_RS01570 0.18 +2.3 305,524 + MMJJ_RS01570 0.18 -2.6 305,540 - MMJJ_RS01570 0.19 -1.0 305,541 + MMJJ_RS01570 0.19 +0.9 305,559 - MMJJ_RS01570 0.21 +1.1 305,560 + MMJJ_RS01570 0.21 +2.0 305,560 + MMJJ_RS01570 0.21 -3.1 305,599 + MMJJ_RS01570 0.23 -2.2 305,603 - MMJJ_RS01570 0.23 +1.9 305,603 - MMJJ_RS01570 0.23 +3.8 305,603 - MMJJ_RS01570 0.23 +1.9 305,603 - MMJJ_RS01570 0.23 +2.6 305,603 - MMJJ_RS01570 0.23 +1.2 305,604 + MMJJ_RS01570 0.23 +2.2 305,634 - MMJJ_RS01570 0.25 +0.5 305,637 - MMJJ_RS01570 0.25 -0.9 305,666 - MMJJ_RS01570 0.27 +0.9 305,667 + MMJJ_RS01570 0.27 +3.9 305,711 - MMJJ_RS01570 0.30 -4.2 305,712 + MMJJ_RS01570 0.30 -1.7 305,733 - MMJJ_RS01570 0.31 -0.8 305,785 + MMJJ_RS01570 0.35 -0.5 305,799 - MMJJ_RS01570 0.35 -0.9 305,800 + MMJJ_RS01570 0.35 -0.9 305,804 - MMJJ_RS01570 0.36 -2.6 305,804 - MMJJ_RS01570 0.36 -1.8 305,804 - MMJJ_RS01570 0.36 +2.2 305,805 + MMJJ_RS01570 0.36 -3.4 305,805 + MMJJ_RS01570 0.36 -1.6 305,809 + MMJJ_RS01570 0.36 -2.2 305,817 - MMJJ_RS01570 0.36 -1.1 305,820 - MMJJ_RS01570 0.37 +0.6 305,820 - MMJJ_RS01570 0.37 +1.0 305,868 + MMJJ_RS01570 0.40 -0.3 305,868 + MMJJ_RS01570 0.40 -1.9 305,871 - MMJJ_RS01570 0.40 -4.4 305,872 + MMJJ_RS01570 0.40 +2.3 305,951 - MMJJ_RS01570 0.45 -2.3 305,951 - MMJJ_RS01570 0.45 -2.7 305,951 - MMJJ_RS01570 0.45 +1.4 305,963 - MMJJ_RS01570 0.45 -0.0 305,997 - MMJJ_RS01570 0.48 +1.0 306,003 - MMJJ_RS01570 0.48 -0.5 306,003 - MMJJ_RS01570 0.48 -3.5 306,025 + MMJJ_RS01570 0.49 -0.8 306,069 + MMJJ_RS01570 0.52 +1.5 306,174 - MMJJ_RS01570 0.59 +1.1 306,185 + MMJJ_RS01570 0.59 -0.8 306,194 - MMJJ_RS01570 0.60 +0.8 306,194 - MMJJ_RS01570 0.60 -1.7 306,195 + MMJJ_RS01570 0.60 -0.8
Or see this region's nucleotide sequence