Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01465 and MMJJ_RS01470 are separated by 118 nucleotides MMJJ_RS01470 and MMJJ_RS01475 are separated by 163 nucleotides
MMJJ_RS01465: MMJJ_RS01465 - METTL5 family protein, at 286,896 to 287,537
_RS01465
MMJJ_RS01470: MMJJ_RS01470 - Hsp20/alpha crystallin family protein, at 287,656 to 288,120
_RS01470
MMJJ_RS01475: MMJJ_RS01475 - signal recognition particle-docking protein FtsY, at 288,284 to 289,435
_RS01475
Position (kb) 287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 286.783 kb on - strand at 286.837 kb on - strand at 286.840 kb on + strand at 286.842 kb on + strand at 286.914 kb on + strand at 286.987 kb on + strand, within MMJJ_RS01465 at 286.987 kb on + strand, within MMJJ_RS01465 at 286.989 kb on + strand, within MMJJ_RS01465 at 286.989 kb on + strand at 287.020 kb on - strand, within MMJJ_RS01465 at 287.020 kb on - strand, within MMJJ_RS01465 at 287.021 kb on + strand, within MMJJ_RS01465 at 287.021 kb on + strand, within MMJJ_RS01465 at 287.021 kb on + strand, within MMJJ_RS01465 at 287.055 kb on - strand, within MMJJ_RS01465 at 287.060 kb on - strand, within MMJJ_RS01465 at 287.169 kb on + strand, within MMJJ_RS01465 at 287.214 kb on + strand, within MMJJ_RS01465 at 287.260 kb on + strand, within MMJJ_RS01465 at 287.260 kb on + strand, within MMJJ_RS01465 at 287.359 kb on + strand, within MMJJ_RS01465 at 287.360 kb on - strand, within MMJJ_RS01465 at 287.361 kb on + strand, within MMJJ_RS01465 at 287.382 kb on - strand, within MMJJ_RS01465 at 287.408 kb on - strand, within MMJJ_RS01465 at 287.538 kb on - strand at 287.554 kb on + strand at 287.559 kb on - strand at 287.570 kb on - strand at 287.577 kb on + strand at 287.577 kb on + strand at 287.582 kb on - strand at 287.616 kb on - strand at 287.616 kb on - strand at 287.617 kb on + strand at 287.617 kb on + strand at 287.621 kb on + strand at 287.633 kb on - strand at 287.634 kb on + strand at 287.639 kb on - strand at 287.657 kb on - strand at 287.658 kb on + strand at 287.662 kb on - strand at 287.683 kb on + strand at 287.707 kb on - strand, within MMJJ_RS01470 at 287.775 kb on - strand, within MMJJ_RS01470 at 287.838 kb on - strand, within MMJJ_RS01470 at 287.894 kb on + strand, within MMJJ_RS01470 at 287.924 kb on + strand, within MMJJ_RS01470 at 287.968 kb on + strand, within MMJJ_RS01470 at 287.988 kb on - strand, within MMJJ_RS01470 at 287.989 kb on + strand, within MMJJ_RS01470 at 288.055 kb on + strand, within MMJJ_RS01470 at 288.201 kb on - strand at 288.202 kb on + strand at 288.202 kb on + strand at 288.202 kb on + strand at 288.206 kb on - strand at 288.210 kb on - strand at 288.216 kb on - strand at 288.217 kb on + strand at 288.219 kb on - strand at 288.219 kb on - strand at 288.219 kb on - strand at 288.220 kb on + strand at 288.220 kb on + strand at 288.221 kb on - strand at 288.221 kb on - strand at 288.221 kb on - strand at 288.222 kb on + strand at 288.222 kb on + strand at 288.222 kb on + strand at 288.226 kb on + strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.240 kb on - strand at 288.241 kb on + strand at 288.747 kb on - strand, within MMJJ_RS01475 at 288.835 kb on + strand at 288.862 kb on + strand, within MMJJ_RS01475 at 289.079 kb on + strand, within MMJJ_RS01475 at 289.096 kb on - strand, within MMJJ_RS01475
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 286,783 - -0.5 286,837 - +1.1 286,840 + -0.5 286,842 + +3.2 286,914 + +0.7 286,987 + MMJJ_RS01465 0.14 +0.7 286,987 + MMJJ_RS01465 0.14 -2.4 286,989 + MMJJ_RS01465 0.14 +2.7 286,989 + +1.1 287,020 - MMJJ_RS01465 0.19 +1.8 287,020 - MMJJ_RS01465 0.19 +1.7 287,021 + MMJJ_RS01465 0.19 +1.4 287,021 + MMJJ_RS01465 0.19 +1.7 287,021 + MMJJ_RS01465 0.19 +2.1 287,055 - MMJJ_RS01465 0.25 -0.5 287,060 - MMJJ_RS01465 0.26 -0.9 287,169 + MMJJ_RS01465 0.43 -2.8 287,214 + MMJJ_RS01465 0.50 -3.0 287,260 + MMJJ_RS01465 0.57 +0.7 287,260 + MMJJ_RS01465 0.57 -0.7 287,359 + MMJJ_RS01465 0.72 +1.2 287,360 - MMJJ_RS01465 0.72 +0.7 287,361 + MMJJ_RS01465 0.72 -2.5 287,382 - MMJJ_RS01465 0.76 -3.3 287,408 - MMJJ_RS01465 0.80 +0.1 287,538 - +0.9 287,554 + -2.1 287,559 - +1.6 287,570 - +1.7 287,577 + -0.2 287,577 + +3.0 287,582 - +6.2 287,616 - -0.7 287,616 - +2.6 287,617 + +1.2 287,617 + -2.2 287,621 + -1.9 287,633 - -3.0 287,634 + -0.3 287,639 - -2.3 287,657 - -1.0 287,658 + +1.5 287,662 - -1.9 287,683 + -2.7 287,707 - MMJJ_RS01470 0.11 -2.5 287,775 - MMJJ_RS01470 0.26 +0.2 287,838 - MMJJ_RS01470 0.39 +2.9 287,894 + MMJJ_RS01470 0.51 +3.7 287,924 + MMJJ_RS01470 0.58 -0.1 287,968 + MMJJ_RS01470 0.67 +4.7 287,988 - MMJJ_RS01470 0.71 +1.9 287,989 + MMJJ_RS01470 0.72 -2.6 288,055 + MMJJ_RS01470 0.86 -0.5 288,201 - +2.0 288,202 + -0.2 288,202 + -2.0 288,202 + +1.7 288,206 - +1.6 288,210 - -2.6 288,216 - +0.5 288,217 + -0.8 288,219 - -1.5 288,219 - +2.3 288,219 - -0.5 288,220 + +1.2 288,220 + -1.4 288,221 - -3.3 288,221 - +2.5 288,221 - +0.5 288,222 + -3.3 288,222 + -0.4 288,222 + +0.7 288,226 + +4.3 288,238 - +4.6 288,238 - +0.5 288,238 - +0.5 288,238 - +1.1 288,238 - +2.6 288,240 - +5.2 288,241 + +2.8 288,747 - MMJJ_RS01475 0.40 -1.6 288,835 + +0.1 288,862 + MMJJ_RS01475 0.50 +0.1 289,079 + MMJJ_RS01475 0.69 +0.1 289,096 - MMJJ_RS01475 0.70 +0.1
Or see this region's nucleotide sequence