Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01425 and MMJJ_RS01430 are separated by 85 nucleotides MMJJ_RS01430 and MMJJ_RS01435 are separated by 5 nucleotides MMJJ_RS01435 and MMJJ_RS01440 are separated by 69 nucleotides
MMJJ_RS01425: MMJJ_RS01425 - cell wall-binding protein, at 278,189 to 279,145
_RS01425
MMJJ_RS01430: MMJJ_RS01430 - hypothetical protein, at 279,231 to 279,776
_RS01430
MMJJ_RS01435: MMJJ_RS01435 - 4Fe-4S binding protein, at 279,782 to 280,483
_RS01435
MMJJ_RS01440: MMJJ_RS01440 - NCS2 family permease, at 280,553 to 281,854
_RS01440
Position (kb) 279
280 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 278.243 kb on - strand at 278.263 kb on + strand at 278.263 kb on + strand at 278.266 kb on + strand at 278.292 kb on - strand, within MMJJ_RS01425 at 278.302 kb on - strand, within MMJJ_RS01425 at 278.366 kb on + strand, within MMJJ_RS01425 at 278.371 kb on + strand, within MMJJ_RS01425 at 278.379 kb on - strand, within MMJJ_RS01425 at 278.403 kb on - strand, within MMJJ_RS01425 at 278.442 kb on + strand, within MMJJ_RS01425 at 278.468 kb on + strand, within MMJJ_RS01425 at 278.518 kb on - strand, within MMJJ_RS01425 at 278.519 kb on + strand, within MMJJ_RS01425 at 278.519 kb on + strand, within MMJJ_RS01425 at 278.519 kb on + strand, within MMJJ_RS01425 at 278.523 kb on - strand, within MMJJ_RS01425 at 278.524 kb on + strand at 278.527 kb on - strand, within MMJJ_RS01425 at 278.591 kb on + strand, within MMJJ_RS01425 at 278.613 kb on - strand, within MMJJ_RS01425 at 278.623 kb on + strand, within MMJJ_RS01425 at 278.626 kb on + strand, within MMJJ_RS01425 at 278.671 kb on - strand, within MMJJ_RS01425 at 278.686 kb on - strand, within MMJJ_RS01425 at 278.709 kb on + strand, within MMJJ_RS01425 at 278.709 kb on + strand, within MMJJ_RS01425 at 278.715 kb on + strand, within MMJJ_RS01425 at 278.727 kb on - strand, within MMJJ_RS01425 at 278.816 kb on + strand, within MMJJ_RS01425 at 278.841 kb on - strand, within MMJJ_RS01425 at 278.842 kb on + strand, within MMJJ_RS01425 at 278.883 kb on + strand, within MMJJ_RS01425 at 278.883 kb on + strand, within MMJJ_RS01425 at 278.892 kb on - strand, within MMJJ_RS01425 at 278.893 kb on + strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.904 kb on + strand, within MMJJ_RS01425 at 278.919 kb on + strand, within MMJJ_RS01425 at 278.924 kb on - strand, within MMJJ_RS01425 at 278.924 kb on - strand, within MMJJ_RS01425 at 278.925 kb on + strand, within MMJJ_RS01425 at 278.925 kb on + strand, within MMJJ_RS01425 at 278.925 kb on + strand, within MMJJ_RS01425 at 278.930 kb on - strand, within MMJJ_RS01425 at 278.962 kb on + strand, within MMJJ_RS01425 at 278.962 kb on + strand, within MMJJ_RS01425 at 278.968 kb on - strand, within MMJJ_RS01425 at 278.969 kb on + strand, within MMJJ_RS01425 at 279.035 kb on + strand, within MMJJ_RS01425 at 279.157 kb on - strand at 279.158 kb on + strand at 279.158 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.160 kb on + strand at 279.208 kb on + strand at 279.210 kb on - strand at 279.210 kb on - strand at 279.213 kb on - strand at 279.213 kb on - strand at 279.213 kb on - strand at 279.214 kb on + strand at 279.216 kb on - strand at 279.216 kb on - strand at 279.217 kb on + strand at 279.218 kb on - strand at 279.218 kb on - strand at 279.218 kb on - strand at 279.219 kb on + strand at 279.259 kb on - strand at 279.260 kb on + strand at 279.278 kb on + strand at 279.315 kb on + strand, within MMJJ_RS01430 at 279.354 kb on - strand, within MMJJ_RS01430 at 279.354 kb on - strand at 279.354 kb on - strand, within MMJJ_RS01430 at 279.354 kb on - strand, within MMJJ_RS01430 at 279.355 kb on + strand, within MMJJ_RS01430 at 279.355 kb on + strand, within MMJJ_RS01430 at 279.356 kb on - strand, within MMJJ_RS01430 at 279.363 kb on + strand, within MMJJ_RS01430 at 279.368 kb on - strand, within MMJJ_RS01430 at 279.447 kb on - strand, within MMJJ_RS01430 at 279.448 kb on + strand, within MMJJ_RS01430 at 279.457 kb on - strand, within MMJJ_RS01430 at 279.458 kb on + strand, within MMJJ_RS01430 at 279.458 kb on + strand, within MMJJ_RS01430 at 279.468 kb on - strand, within MMJJ_RS01430 at 279.468 kb on - strand, within MMJJ_RS01430 at 279.469 kb on + strand, within MMJJ_RS01430 at 279.503 kb on - strand, within MMJJ_RS01430 at 279.504 kb on + strand, within MMJJ_RS01430 at 279.567 kb on + strand, within MMJJ_RS01430 at 279.574 kb on - strand, within MMJJ_RS01430 at 279.574 kb on - strand, within MMJJ_RS01430 at 279.588 kb on + strand, within MMJJ_RS01430 at 279.611 kb on + strand, within MMJJ_RS01430 at 279.611 kb on + strand, within MMJJ_RS01430 at 279.635 kb on + strand, within MMJJ_RS01430 at 279.640 kb on + strand, within MMJJ_RS01430 at 279.677 kb on + strand, within MMJJ_RS01430 at 279.681 kb on + strand, within MMJJ_RS01430 at 279.747 kb on + strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.780 kb on + strand at 279.814 kb on + strand at 279.869 kb on + strand, within MMJJ_RS01435 at 279.869 kb on + strand, within MMJJ_RS01435 at 279.873 kb on - strand, within MMJJ_RS01435 at 279.982 kb on - strand, within MMJJ_RS01435 at 279.982 kb on - strand, within MMJJ_RS01435 at 279.983 kb on + strand, within MMJJ_RS01435 at 279.983 kb on + strand, within MMJJ_RS01435 at 279.985 kb on + strand, within MMJJ_RS01435 at 280.016 kb on - strand, within MMJJ_RS01435 at 280.017 kb on + strand, within MMJJ_RS01435 at 280.018 kb on - strand, within MMJJ_RS01435 at 280.019 kb on + strand, within MMJJ_RS01435 at 280.035 kb on - strand, within MMJJ_RS01435 at 280.040 kb on + strand, within MMJJ_RS01435 at 280.040 kb on + strand, within MMJJ_RS01435 at 280.063 kb on + strand, within MMJJ_RS01435 at 280.063 kb on + strand, within MMJJ_RS01435 at 280.091 kb on - strand, within MMJJ_RS01435 at 280.091 kb on - strand, within MMJJ_RS01435 at 280.095 kb on - strand, within MMJJ_RS01435 at 280.100 kb on - strand, within MMJJ_RS01435 at 280.101 kb on + strand at 280.124 kb on - strand, within MMJJ_RS01435 at 280.125 kb on + strand, within MMJJ_RS01435 at 280.125 kb on + strand, within MMJJ_RS01435 at 280.148 kb on - strand, within MMJJ_RS01435 at 280.148 kb on - strand at 280.148 kb on - strand, within MMJJ_RS01435 at 280.148 kb on - strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.152 kb on - strand, within MMJJ_RS01435 at 280.153 kb on + strand, within MMJJ_RS01435 at 280.164 kb on - strand, within MMJJ_RS01435 at 280.164 kb on - strand, within MMJJ_RS01435 at 280.165 kb on + strand, within MMJJ_RS01435 at 280.165 kb on + strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.216 kb on + strand, within MMJJ_RS01435 at 280.216 kb on + strand, within MMJJ_RS01435 at 280.221 kb on - strand, within MMJJ_RS01435 at 280.221 kb on - strand, within MMJJ_RS01435 at 280.245 kb on + strand, within MMJJ_RS01435 at 280.272 kb on + strand, within MMJJ_RS01435 at 280.305 kb on - strand, within MMJJ_RS01435 at 280.342 kb on - strand, within MMJJ_RS01435 at 280.343 kb on + strand, within MMJJ_RS01435 at 280.343 kb on + strand, within MMJJ_RS01435 at 280.349 kb on + strand, within MMJJ_RS01435 at 280.391 kb on + strand, within MMJJ_RS01435 at 280.393 kb on - strand, within MMJJ_RS01435 at 280.394 kb on + strand, within MMJJ_RS01435 at 280.394 kb on + strand, within MMJJ_RS01435 at 280.395 kb on - strand, within MMJJ_RS01435 at 280.396 kb on + strand, within MMJJ_RS01435 at 280.424 kb on + strand at 280.467 kb on - strand at 280.468 kb on + strand at 280.473 kb on + strand at 280.473 kb on + strand at 280.503 kb on + strand at 280.513 kb on - strand at 280.517 kb on - strand at 280.518 kb on + strand at 280.536 kb on + strand at 280.599 kb on - strand at 280.599 kb on - strand at 280.614 kb on + strand at 280.667 kb on - strand at 280.668 kb on + strand at 280.692 kb on - strand, within MMJJ_RS01440 at 280.692 kb on - strand, within MMJJ_RS01440 at 280.693 kb on + strand, within MMJJ_RS01440 at 280.693 kb on + strand, within MMJJ_RS01440 at 280.712 kb on - strand, within MMJJ_RS01440 at 280.712 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 278,243 - +2.0 278,263 + +1.6 278,263 + -0.4 278,266 + -1.8 278,292 - MMJJ_RS01425 0.11 +1.2 278,302 - MMJJ_RS01425 0.12 +2.1 278,366 + MMJJ_RS01425 0.18 +2.3 278,371 + MMJJ_RS01425 0.19 +0.9 278,379 - MMJJ_RS01425 0.20 +2.5 278,403 - MMJJ_RS01425 0.22 -1.0 278,442 + MMJJ_RS01425 0.26 -0.6 278,468 + MMJJ_RS01425 0.29 -0.3 278,518 - MMJJ_RS01425 0.34 +0.5 278,519 + MMJJ_RS01425 0.34 -3.0 278,519 + MMJJ_RS01425 0.34 +2.7 278,519 + MMJJ_RS01425 0.34 +1.9 278,523 - MMJJ_RS01425 0.35 -2.4 278,524 + +1.1 278,527 - MMJJ_RS01425 0.35 +1.7 278,591 + MMJJ_RS01425 0.42 +0.5 278,613 - MMJJ_RS01425 0.44 -1.9 278,623 + MMJJ_RS01425 0.45 +0.0 278,626 + MMJJ_RS01425 0.46 +5.3 278,671 - MMJJ_RS01425 0.50 -2.8 278,686 - MMJJ_RS01425 0.52 -0.1 278,709 + MMJJ_RS01425 0.54 +0.3 278,709 + MMJJ_RS01425 0.54 -2.4 278,715 + MMJJ_RS01425 0.55 +0.9 278,727 - MMJJ_RS01425 0.56 -0.4 278,816 + MMJJ_RS01425 0.66 -1.6 278,841 - MMJJ_RS01425 0.68 -0.5 278,842 + MMJJ_RS01425 0.68 +1.4 278,883 + MMJJ_RS01425 0.73 -0.6 278,883 + MMJJ_RS01425 0.73 +0.6 278,892 - MMJJ_RS01425 0.73 -1.4 278,893 + MMJJ_RS01425 0.74 -2.3 278,903 - MMJJ_RS01425 0.75 +1.6 278,903 - MMJJ_RS01425 0.75 +1.0 278,903 - MMJJ_RS01425 0.75 +1.8 278,903 - MMJJ_RS01425 0.75 +1.5 278,904 + MMJJ_RS01425 0.75 +1.2 278,919 + MMJJ_RS01425 0.76 +0.7 278,924 - MMJJ_RS01425 0.77 -1.3 278,924 - MMJJ_RS01425 0.77 +1.1 278,925 + MMJJ_RS01425 0.77 +0.2 278,925 + MMJJ_RS01425 0.77 +1.6 278,925 + MMJJ_RS01425 0.77 -0.1 278,930 - MMJJ_RS01425 0.77 +0.6 278,962 + MMJJ_RS01425 0.81 -1.1 278,962 + MMJJ_RS01425 0.81 -1.9 278,968 - MMJJ_RS01425 0.81 +5.1 278,969 + MMJJ_RS01425 0.82 -1.9 279,035 + MMJJ_RS01425 0.88 +2.4 279,157 - +2.1 279,158 + +1.8 279,158 + -1.5 279,159 - -2.6 279,159 - +1.0 279,160 + +0.5 279,208 + +2.0 279,210 - +2.9 279,210 - +4.9 279,213 - -0.9 279,213 - +2.2 279,213 - -0.5 279,214 + -0.6 279,216 - -0.7 279,216 - -1.5 279,217 + -2.4 279,218 - +0.6 279,218 - +1.6 279,218 - -1.7 279,219 + -1.4 279,259 - +0.9 279,260 + -0.3 279,278 + +0.3 279,315 + MMJJ_RS01430 0.15 -1.0 279,354 - MMJJ_RS01430 0.23 -1.8 279,354 - +1.1 279,354 - MMJJ_RS01430 0.23 -0.8 279,354 - MMJJ_RS01430 0.23 +0.2 279,355 + MMJJ_RS01430 0.23 +1.1 279,355 + MMJJ_RS01430 0.23 -0.4 279,356 - MMJJ_RS01430 0.23 +3.4 279,363 + MMJJ_RS01430 0.24 -2.0 279,368 - MMJJ_RS01430 0.25 +0.7 279,447 - MMJJ_RS01430 0.40 +2.0 279,448 + MMJJ_RS01430 0.40 +0.5 279,457 - MMJJ_RS01430 0.41 +2.4 279,458 + MMJJ_RS01430 0.42 +1.3 279,458 + MMJJ_RS01430 0.42 +1.3 279,468 - MMJJ_RS01430 0.43 +1.1 279,468 - MMJJ_RS01430 0.43 +1.7 279,469 + MMJJ_RS01430 0.44 -1.6 279,503 - MMJJ_RS01430 0.50 -0.3 279,504 + MMJJ_RS01430 0.50 +1.0 279,567 + MMJJ_RS01430 0.62 -1.8 279,574 - MMJJ_RS01430 0.63 +0.1 279,574 - MMJJ_RS01430 0.63 +0.1 279,588 + MMJJ_RS01430 0.65 +2.1 279,611 + MMJJ_RS01430 0.70 +2.7 279,611 + MMJJ_RS01430 0.70 -2.5 279,635 + MMJJ_RS01430 0.74 +0.9 279,640 + MMJJ_RS01430 0.75 +0.1 279,677 + MMJJ_RS01430 0.82 -1.7 279,681 + MMJJ_RS01430 0.82 +0.3 279,747 + -3.8 279,779 - -1.5 279,779 - +0.8 279,780 + -0.2 279,814 + -1.3 279,869 + MMJJ_RS01435 0.12 +1.1 279,869 + MMJJ_RS01435 0.12 +2.0 279,873 - MMJJ_RS01435 0.13 -0.4 279,982 - MMJJ_RS01435 0.28 -1.3 279,982 - MMJJ_RS01435 0.28 -2.9 279,983 + MMJJ_RS01435 0.29 -1.4 279,983 + MMJJ_RS01435 0.29 -1.4 279,985 + MMJJ_RS01435 0.29 -1.3 280,016 - MMJJ_RS01435 0.33 +0.1 280,017 + MMJJ_RS01435 0.33 -2.1 280,018 - MMJJ_RS01435 0.34 +1.1 280,019 + MMJJ_RS01435 0.34 +3.6 280,035 - MMJJ_RS01435 0.36 -2.4 280,040 + MMJJ_RS01435 0.37 +4.7 280,040 + MMJJ_RS01435 0.37 -1.5 280,063 + MMJJ_RS01435 0.40 +1.4 280,063 + MMJJ_RS01435 0.40 +3.8 280,091 - MMJJ_RS01435 0.44 +1.5 280,091 - MMJJ_RS01435 0.44 -2.1 280,095 - MMJJ_RS01435 0.45 +0.2 280,100 - MMJJ_RS01435 0.45 -0.6 280,101 + +0.1 280,124 - MMJJ_RS01435 0.49 +1.6 280,125 + MMJJ_RS01435 0.49 -0.1 280,125 + MMJJ_RS01435 0.49 -1.3 280,148 - MMJJ_RS01435 0.52 +3.9 280,148 - -0.5 280,148 - MMJJ_RS01435 0.52 +1.5 280,148 - MMJJ_RS01435 0.52 -0.9 280,149 + MMJJ_RS01435 0.52 -1.6 280,149 + MMJJ_RS01435 0.52 +0.0 280,149 + MMJJ_RS01435 0.52 -1.7 280,149 + MMJJ_RS01435 0.52 +3.1 280,152 - MMJJ_RS01435 0.53 -3.5 280,153 + MMJJ_RS01435 0.53 -1.6 280,164 - MMJJ_RS01435 0.54 -2.1 280,164 - MMJJ_RS01435 0.54 -1.6 280,165 + MMJJ_RS01435 0.55 +3.6 280,165 + MMJJ_RS01435 0.55 -0.4 280,213 - MMJJ_RS01435 0.61 -2.8 280,213 - MMJJ_RS01435 0.61 +0.1 280,213 - MMJJ_RS01435 0.61 +2.0 280,213 - MMJJ_RS01435 0.61 +2.4 280,214 + MMJJ_RS01435 0.62 -0.5 280,214 + MMJJ_RS01435 0.62 +1.1 280,214 + MMJJ_RS01435 0.62 +0.8 280,214 + MMJJ_RS01435 0.62 -0.9 280,215 - MMJJ_RS01435 0.62 -1.3 280,215 - MMJJ_RS01435 0.62 -3.5 280,215 - MMJJ_RS01435 0.62 -1.1 280,216 + MMJJ_RS01435 0.62 -1.5 280,216 + MMJJ_RS01435 0.62 +0.9 280,221 - MMJJ_RS01435 0.63 -1.0 280,221 - MMJJ_RS01435 0.63 -0.3 280,245 + MMJJ_RS01435 0.66 -2.8 280,272 + MMJJ_RS01435 0.70 +1.8 280,305 - MMJJ_RS01435 0.75 +1.1 280,342 - MMJJ_RS01435 0.80 -0.5 280,343 + MMJJ_RS01435 0.80 -1.0 280,343 + MMJJ_RS01435 0.80 -0.3 280,349 + MMJJ_RS01435 0.81 -2.2 280,391 + MMJJ_RS01435 0.87 +2.1 280,393 - MMJJ_RS01435 0.87 -1.1 280,394 + MMJJ_RS01435 0.87 +2.5 280,394 + MMJJ_RS01435 0.87 -1.5 280,395 - MMJJ_RS01435 0.87 +0.3 280,396 + MMJJ_RS01435 0.87 +1.8 280,424 + -0.2 280,467 - +0.9 280,468 + +2.6 280,473 + +4.0 280,473 + -0.9 280,503 + +1.5 280,513 - +4.3 280,517 - +0.1 280,518 + +0.3 280,536 + -2.5 280,599 - +1.3 280,599 - -0.0 280,614 + -1.5 280,667 - +3.0 280,668 + +1.9 280,692 - MMJJ_RS01440 0.11 -1.3 280,692 - MMJJ_RS01440 0.11 -1.7 280,693 + MMJJ_RS01440 0.11 +0.5 280,693 + MMJJ_RS01440 0.11 +3.1 280,712 - MMJJ_RS01440 0.12 +1.4 280,712 - MMJJ_RS01440 0.12 -2.1 280,720 - MMJJ_RS01440 0.13 +0.2 280,720 - MMJJ_RS01440 0.13 +0.8 280,720 - MMJJ_RS01440 0.13 -3.3
Or see this region's nucleotide sequence