Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01370 and MMJJ_RS01375 are separated by 13 nucleotides MMJJ_RS01375 and MMJJ_RS01380 are separated by 39 nucleotides MMJJ_RS01380 and MMJJ_RS01385 are separated by 194 nucleotides
MMJJ_RS01370: MMJJ_RS01370 - MnmC family methyltransferase, at 264,942 to 265,964
_RS01370
MMJJ_RS01375: MMJJ_RS01375 - tetrahydromethanopterin:alpha-L-glutamate ligase, at 265,978 to 266,856
_RS01375
MMJJ_RS01380: MMJJ_RS01380 - DUF1890 domain-containing protein, at 266,896 to 267,339
_RS01380
MMJJ_RS01385: MMJJ_RS01385 - PadR family transcriptional regulator, at 267,534 to 268,085
_RS01385
Position (kb) 265
266
267 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 265.036 kb on - strand at 265.140 kb on + strand, within MMJJ_RS01370 at 265.262 kb on + strand, within MMJJ_RS01370 at 265.262 kb on + strand, within MMJJ_RS01370 at 265.265 kb on - strand, within MMJJ_RS01370 at 265.265 kb on - strand, within MMJJ_RS01370 at 265.265 kb on - strand, within MMJJ_RS01370 at 265.265 kb on - strand, within MMJJ_RS01370 at 265.266 kb on + strand, within MMJJ_RS01370 at 265.266 kb on + strand, within MMJJ_RS01370 at 265.267 kb on - strand, within MMJJ_RS01370 at 265.267 kb on - strand, within MMJJ_RS01370 at 265.267 kb on - strand, within MMJJ_RS01370 at 265.267 kb on - strand, within MMJJ_RS01370 at 265.268 kb on + strand, within MMJJ_RS01370 at 265.271 kb on + strand, within MMJJ_RS01370 at 265.271 kb on + strand, within MMJJ_RS01370 at 265.271 kb on + strand, within MMJJ_RS01370 at 265.275 kb on - strand, within MMJJ_RS01370 at 265.297 kb on - strand, within MMJJ_RS01370 at 265.334 kb on - strand, within MMJJ_RS01370 at 265.351 kb on - strand, within MMJJ_RS01370 at 265.374 kb on + strand, within MMJJ_RS01370 at 265.453 kb on - strand, within MMJJ_RS01370 at 265.478 kb on + strand, within MMJJ_RS01370 at 265.493 kb on + strand, within MMJJ_RS01370 at 265.493 kb on + strand, within MMJJ_RS01370 at 265.493 kb on + strand, within MMJJ_RS01370 at 265.496 kb on - strand, within MMJJ_RS01370 at 265.497 kb on + strand, within MMJJ_RS01370 at 265.557 kb on - strand, within MMJJ_RS01370 at 265.646 kb on - strand, within MMJJ_RS01370 at 265.646 kb on - strand, within MMJJ_RS01370 at 265.647 kb on + strand, within MMJJ_RS01370 at 265.657 kb on + strand, within MMJJ_RS01370 at 265.729 kb on - strand, within MMJJ_RS01370 at 265.733 kb on - strand, within MMJJ_RS01370 at 265.734 kb on + strand, within MMJJ_RS01370 at 265.786 kb on - strand, within MMJJ_RS01370 at 265.839 kb on + strand, within MMJJ_RS01370 at 265.842 kb on - strand, within MMJJ_RS01370 at 265.843 kb on + strand, within MMJJ_RS01370 at 265.843 kb on + strand, within MMJJ_RS01370 at 265.843 kb on + strand, within MMJJ_RS01370 at 265.853 kb on - strand, within MMJJ_RS01370 at 265.862 kb on - strand at 265.863 kb on + strand at 265.876 kb on - strand at 265.876 kb on - strand at 265.913 kb on + strand at 265.951 kb on + strand at 265.979 kb on - strand at 266.032 kb on - strand at 266.033 kb on + strand at 266.078 kb on + strand, within MMJJ_RS01375 at 266.114 kb on + strand, within MMJJ_RS01375 at 266.114 kb on + strand, within MMJJ_RS01375 at 266.119 kb on - strand, within MMJJ_RS01375 at 266.119 kb on - strand, within MMJJ_RS01375 at 266.119 kb on - strand, within MMJJ_RS01375 at 266.120 kb on + strand, within MMJJ_RS01375 at 266.174 kb on + strand, within MMJJ_RS01375 at 266.247 kb on - strand, within MMJJ_RS01375 at 266.250 kb on + strand, within MMJJ_RS01375 at 266.336 kb on - strand, within MMJJ_RS01375 at 266.337 kb on + strand, within MMJJ_RS01375 at 266.337 kb on + strand, within MMJJ_RS01375 at 266.358 kb on - strand, within MMJJ_RS01375 at 266.398 kb on + strand, within MMJJ_RS01375 at 266.410 kb on - strand, within MMJJ_RS01375 at 266.411 kb on + strand, within MMJJ_RS01375 at 266.411 kb on + strand, within MMJJ_RS01375 at 266.447 kb on + strand, within MMJJ_RS01375 at 266.466 kb on - strand, within MMJJ_RS01375 at 266.562 kb on - strand, within MMJJ_RS01375 at 266.599 kb on - strand, within MMJJ_RS01375 at 266.599 kb on - strand, within MMJJ_RS01375 at 266.600 kb on + strand, within MMJJ_RS01375 at 266.605 kb on - strand, within MMJJ_RS01375 at 266.605 kb on - strand, within MMJJ_RS01375 at 266.605 kb on - strand, within MMJJ_RS01375 at 266.605 kb on - strand, within MMJJ_RS01375 at 266.609 kb on - strand, within MMJJ_RS01375 at 266.621 kb on - strand, within MMJJ_RS01375 at 266.621 kb on - strand, within MMJJ_RS01375 at 266.621 kb on - strand, within MMJJ_RS01375 at 266.626 kb on - strand, within MMJJ_RS01375 at 266.627 kb on + strand, within MMJJ_RS01375 at 266.627 kb on + strand, within MMJJ_RS01375 at 266.674 kb on + strand, within MMJJ_RS01375 at 266.706 kb on - strand, within MMJJ_RS01375 at 266.725 kb on + strand, within MMJJ_RS01375 at 266.764 kb on - strand, within MMJJ_RS01375 at 266.764 kb on - strand, within MMJJ_RS01375 at 266.767 kb on + strand, within MMJJ_RS01375 at 266.779 kb on - strand at 266.779 kb on - strand at 266.779 kb on - strand at 266.780 kb on + strand at 266.857 kb on + strand at 266.857 kb on + strand at 266.859 kb on - strand at 266.868 kb on + strand at 266.888 kb on - strand at 266.889 kb on + strand at 266.889 kb on + strand at 267.043 kb on + strand, within MMJJ_RS01380 at 267.046 kb on - strand, within MMJJ_RS01380 at 267.046 kb on - strand, within MMJJ_RS01380 at 267.047 kb on + strand, within MMJJ_RS01380 at 267.070 kb on - strand, within MMJJ_RS01380 at 267.077 kb on - strand, within MMJJ_RS01380 at 267.077 kb on - strand, within MMJJ_RS01380 at 267.077 kb on - strand, within MMJJ_RS01380 at 267.078 kb on + strand, within MMJJ_RS01380 at 267.078 kb on + strand, within MMJJ_RS01380 at 267.078 kb on + strand, within MMJJ_RS01380 at 267.078 kb on + strand, within MMJJ_RS01380 at 267.078 kb on + strand, within MMJJ_RS01380 at 267.082 kb on + strand, within MMJJ_RS01380 at 267.082 kb on + strand, within MMJJ_RS01380 at 267.180 kb on + strand, within MMJJ_RS01380 at 267.180 kb on + strand, within MMJJ_RS01380 at 267.182 kb on - strand, within MMJJ_RS01380 at 267.183 kb on + strand, within MMJJ_RS01380 at 267.242 kb on + strand, within MMJJ_RS01380 at 267.267 kb on - strand, within MMJJ_RS01380 at 267.267 kb on - strand, within MMJJ_RS01380 at 267.354 kb on - strand at 267.354 kb on - strand at 267.355 kb on + strand at 267.355 kb on + strand at 267.359 kb on - strand at 267.365 kb on - strand at 267.365 kb on - strand at 267.366 kb on + strand at 267.366 kb on + strand at 267.367 kb on - strand at 267.368 kb on + strand at 267.389 kb on + strand at 267.416 kb on - strand at 267.423 kb on - strand at 267.445 kb on - strand at 267.446 kb on + strand at 267.446 kb on + strand at 267.450 kb on + strand at 267.457 kb on - strand at 267.464 kb on + strand at 267.476 kb on + strand at 267.477 kb on - strand at 267.477 kb on - strand at 267.477 kb on - strand at 267.477 kb on - strand at 267.478 kb on + strand at 267.478 kb on + strand at 267.478 kb on + strand at 267.479 kb on - strand at 267.479 kb on - strand at 267.479 kb on - strand at 267.480 kb on + strand at 267.481 kb on - strand at 267.502 kb on + strand at 267.502 kb on + strand at 267.519 kb on - strand at 267.519 kb on - strand at 267.519 kb on - strand at 267.519 kb on - strand at 267.562 kb on - strand at 267.562 kb on - strand at 267.603 kb on - strand, within MMJJ_RS01385 at 267.603 kb on - strand, within MMJJ_RS01385 at 267.603 kb on - strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.604 kb on + strand, within MMJJ_RS01385 at 267.676 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.678 kb on - strand, within MMJJ_RS01385 at 267.679 kb on + strand, within MMJJ_RS01385 at 267.679 kb on + strand, within MMJJ_RS01385 at 267.679 kb on + strand at 267.679 kb on + strand, within MMJJ_RS01385 at 267.679 kb on + strand, within MMJJ_RS01385 at 267.679 kb on + strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.681 kb on - strand, within MMJJ_RS01385 at 267.682 kb on + strand, within MMJJ_RS01385 at 267.682 kb on + strand, within MMJJ_RS01385 at 267.682 kb on + strand, within MMJJ_RS01385 at 267.682 kb on + strand, within MMJJ_RS01385 at 267.689 kb on + strand, within MMJJ_RS01385 at 267.760 kb on + strand, within MMJJ_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 265,036 - +0.4 265,140 + MMJJ_RS01370 0.19 -1.5 265,262 + MMJJ_RS01370 0.31 -2.1 265,262 + MMJJ_RS01370 0.31 -1.6 265,265 - MMJJ_RS01370 0.32 -0.4 265,265 - MMJJ_RS01370 0.32 -0.5 265,265 - MMJJ_RS01370 0.32 -2.7 265,265 - MMJJ_RS01370 0.32 -2.0 265,266 + MMJJ_RS01370 0.32 -0.2 265,266 + MMJJ_RS01370 0.32 -3.1 265,267 - MMJJ_RS01370 0.32 -1.0 265,267 - MMJJ_RS01370 0.32 -2.1 265,267 - MMJJ_RS01370 0.32 +1.1 265,267 - MMJJ_RS01370 0.32 -1.1 265,268 + MMJJ_RS01370 0.32 -0.2 265,271 + MMJJ_RS01370 0.32 -0.6 265,271 + MMJJ_RS01370 0.32 -1.8 265,271 + MMJJ_RS01370 0.32 -0.2 265,275 - MMJJ_RS01370 0.33 -0.6 265,297 - MMJJ_RS01370 0.35 +0.3 265,334 - MMJJ_RS01370 0.38 +0.3 265,351 - MMJJ_RS01370 0.40 -3.0 265,374 + MMJJ_RS01370 0.42 -1.3 265,453 - MMJJ_RS01370 0.50 -0.7 265,478 + MMJJ_RS01370 0.52 -2.5 265,493 + MMJJ_RS01370 0.54 +0.8 265,493 + MMJJ_RS01370 0.54 +1.1 265,493 + MMJJ_RS01370 0.54 +2.1 265,496 - MMJJ_RS01370 0.54 +1.8 265,497 + MMJJ_RS01370 0.54 -0.1 265,557 - MMJJ_RS01370 0.60 +1.8 265,646 - MMJJ_RS01370 0.69 -0.5 265,646 - MMJJ_RS01370 0.69 -2.9 265,647 + MMJJ_RS01370 0.69 -1.4 265,657 + MMJJ_RS01370 0.70 -2.0 265,729 - MMJJ_RS01370 0.77 +2.3 265,733 - MMJJ_RS01370 0.77 +0.4 265,734 + MMJJ_RS01370 0.77 +1.0 265,786 - MMJJ_RS01370 0.83 -3.6 265,839 + MMJJ_RS01370 0.88 +1.9 265,842 - MMJJ_RS01370 0.88 -0.2 265,843 + MMJJ_RS01370 0.88 -0.9 265,843 + MMJJ_RS01370 0.88 -0.3 265,843 + MMJJ_RS01370 0.88 -0.9 265,853 - MMJJ_RS01370 0.89 -2.1 265,862 - -2.5 265,863 + -1.1 265,876 - +2.5 265,876 - +1.3 265,913 + -0.7 265,951 + -0.4 265,979 - +1.6 266,032 - +0.4 266,033 + +1.3 266,078 + MMJJ_RS01375 0.11 -2.3 266,114 + MMJJ_RS01375 0.15 -1.1 266,114 + MMJJ_RS01375 0.15 -1.7 266,119 - MMJJ_RS01375 0.16 +2.5 266,119 - MMJJ_RS01375 0.16 -1.7 266,119 - MMJJ_RS01375 0.16 -3.3 266,120 + MMJJ_RS01375 0.16 +1.6 266,174 + MMJJ_RS01375 0.22 -1.4 266,247 - MMJJ_RS01375 0.31 -1.5 266,250 + MMJJ_RS01375 0.31 +2.5 266,336 - MMJJ_RS01375 0.41 -1.5 266,337 + MMJJ_RS01375 0.41 +3.8 266,337 + MMJJ_RS01375 0.41 +4.2 266,358 - MMJJ_RS01375 0.43 +3.4 266,398 + MMJJ_RS01375 0.48 -1.5 266,410 - MMJJ_RS01375 0.49 +3.7 266,411 + MMJJ_RS01375 0.49 +1.3 266,411 + MMJJ_RS01375 0.49 -0.4 266,447 + MMJJ_RS01375 0.53 +2.9 266,466 - MMJJ_RS01375 0.56 +4.6 266,562 - MMJJ_RS01375 0.66 -2.2 266,599 - MMJJ_RS01375 0.71 +1.7 266,599 - MMJJ_RS01375 0.71 -3.0 266,600 + MMJJ_RS01375 0.71 +2.3 266,605 - MMJJ_RS01375 0.71 -0.6 266,605 - MMJJ_RS01375 0.71 +3.8 266,605 - MMJJ_RS01375 0.71 +1.0 266,605 - MMJJ_RS01375 0.71 +0.8 266,609 - MMJJ_RS01375 0.72 +1.2 266,621 - MMJJ_RS01375 0.73 +2.5 266,621 - MMJJ_RS01375 0.73 +2.4 266,621 - MMJJ_RS01375 0.73 +1.1 266,626 - MMJJ_RS01375 0.74 +2.2 266,627 + MMJJ_RS01375 0.74 +5.2 266,627 + MMJJ_RS01375 0.74 +0.5 266,674 + MMJJ_RS01375 0.79 +2.2 266,706 - MMJJ_RS01375 0.83 -1.0 266,725 + MMJJ_RS01375 0.85 +3.1 266,764 - MMJJ_RS01375 0.89 +1.1 266,764 - MMJJ_RS01375 0.89 +1.1 266,767 + MMJJ_RS01375 0.90 +2.2 266,779 - -0.5 266,779 - +0.4 266,779 - +1.4 266,780 + +1.6 266,857 + +0.3 266,857 + +1.6 266,859 - +2.4 266,868 + +1.0 266,888 - -0.4 266,889 + -0.0 266,889 + +1.3 267,043 + MMJJ_RS01380 0.33 +0.7 267,046 - MMJJ_RS01380 0.34 +0.7 267,046 - MMJJ_RS01380 0.34 -1.5 267,047 + MMJJ_RS01380 0.34 +0.1 267,070 - MMJJ_RS01380 0.39 -1.5 267,077 - MMJJ_RS01380 0.41 +1.0 267,077 - MMJJ_RS01380 0.41 -0.1 267,077 - MMJJ_RS01380 0.41 +0.2 267,078 + MMJJ_RS01380 0.41 +0.2 267,078 + MMJJ_RS01380 0.41 -1.8 267,078 + MMJJ_RS01380 0.41 +1.5 267,078 + MMJJ_RS01380 0.41 -0.6 267,078 + MMJJ_RS01380 0.41 +1.6 267,082 + MMJJ_RS01380 0.42 +2.3 267,082 + MMJJ_RS01380 0.42 +0.4 267,180 + MMJJ_RS01380 0.64 +2.1 267,180 + MMJJ_RS01380 0.64 -0.9 267,182 - MMJJ_RS01380 0.64 +3.1 267,183 + MMJJ_RS01380 0.65 -0.3 267,242 + MMJJ_RS01380 0.78 +3.2 267,267 - MMJJ_RS01380 0.84 -2.6 267,267 - MMJJ_RS01380 0.84 +1.1 267,354 - +0.4 267,354 - +0.5 267,355 + -0.5 267,355 + -0.1 267,359 - +2.4 267,365 - +1.1 267,365 - +0.3 267,366 + +3.1 267,366 + -2.6 267,367 - -2.2 267,368 + -3.7 267,389 + -3.4 267,416 - -1.7 267,423 - +1.4 267,445 - -0.5 267,446 + -1.2 267,446 + +0.6 267,450 + -1.4 267,457 - +2.5 267,464 + -0.6 267,476 + +0.6 267,477 - -1.4 267,477 - -0.3 267,477 - +2.8 267,477 - +1.1 267,478 + -1.5 267,478 + -0.5 267,478 + +1.0 267,479 - +2.0 267,479 - -2.3 267,479 - -1.7 267,480 + +0.1 267,481 - +1.3 267,502 + -0.5 267,502 + -0.4 267,519 - +0.4 267,519 - +3.6 267,519 - -3.6 267,519 - +1.3 267,562 - +1.5 267,562 - +0.1 267,603 - MMJJ_RS01385 0.12 +3.0 267,603 - MMJJ_RS01385 0.12 -1.3 267,603 - MMJJ_RS01385 0.12 +1.6 267,604 + MMJJ_RS01385 0.13 -1.6 267,604 + MMJJ_RS01385 0.13 -0.4 267,604 + MMJJ_RS01385 0.13 -0.8 267,604 + MMJJ_RS01385 0.13 -2.3 267,604 + MMJJ_RS01385 0.13 +0.4 267,604 + MMJJ_RS01385 0.13 +2.4 267,604 + MMJJ_RS01385 0.13 +1.6 267,676 - MMJJ_RS01385 0.26 -2.2 267,678 - MMJJ_RS01385 0.26 -0.9 267,678 - MMJJ_RS01385 0.26 +0.6 267,678 - MMJJ_RS01385 0.26 +0.0 267,678 - MMJJ_RS01385 0.26 +0.9 267,678 - MMJJ_RS01385 0.26 +1.0 267,678 - MMJJ_RS01385 0.26 +0.5 267,678 - MMJJ_RS01385 0.26 -1.9 267,678 - MMJJ_RS01385 0.26 -2.5 267,678 - MMJJ_RS01385 0.26 -3.8 267,679 + MMJJ_RS01385 0.26 -0.2 267,679 + MMJJ_RS01385 0.26 +0.1 267,679 + +1.1 267,679 + MMJJ_RS01385 0.26 +2.0 267,679 + MMJJ_RS01385 0.26 +0.6 267,679 + MMJJ_RS01385 0.26 -1.5 267,681 - MMJJ_RS01385 0.27 +3.6 267,681 - MMJJ_RS01385 0.27 +1.1 267,681 - MMJJ_RS01385 0.27 +3.6 267,681 - MMJJ_RS01385 0.27 -1.0 267,681 - MMJJ_RS01385 0.27 -2.4 267,681 - MMJJ_RS01385 0.27 -1.7 267,681 - MMJJ_RS01385 0.27 -1.7 267,681 - MMJJ_RS01385 0.27 +2.6 267,682 + MMJJ_RS01385 0.27 +0.3 267,682 + MMJJ_RS01385 0.27 +2.6 267,682 + MMJJ_RS01385 0.27 -1.9 267,682 + MMJJ_RS01385 0.27 +0.5 267,689 + MMJJ_RS01385 0.28 -0.2 267,760 + MMJJ_RS01385 0.41 -0.1
Or see this region's nucleotide sequence