Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01350

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
259,301	+				-2.1
259,311	+				-1.0
259,342	-				-0.8
259,342	-				-1.5
259,350	-				-0.9
259,355	-				-0.0
259,355	-				+1.2
259,356	+				+1.0
259,362	-				+1.1
259,444	-		MMJJ_RS01345	0.10	-0.3
259,445	+		MMJJ_RS01345	0.11	+1.1
259,466	-		MMJJ_RS01345	0.14	-0.9
259,466	-				+3.1
259,679	-		MMJJ_RS01345	0.43	+1.3
259,680	+		MMJJ_RS01345	0.44	-1.5
259,831	-		MMJJ_RS01345	0.65	-2.8
259,847	-		MMJJ_RS01345	0.67	-0.5
259,848	+		MMJJ_RS01345	0.67	+0.1
259,848	+		MMJJ_RS01345	0.67	+0.1
259,848	+		MMJJ_RS01345	0.67	+1.1
259,889	+		MMJJ_RS01345	0.73	+1.1
259,889	+		MMJJ_RS01345	0.73	-0.5
259,891	+		MMJJ_RS01345	0.73	+0.1
260,014	-				-1.7
260,119	-				+0.3
260,120	+				+1.1
260,120	+				-2.3
260,120	+				-2.3
260,123	-				-3.1
260,124	+				-1.2
260,124	+				-0.7
260,127	-				+0.5
260,127	-				+0.2
260,127	-				-3.2
260,127	-				-0.8
260,133	-				-0.6
260,134	+				+0.3
260,137	-				-1.5
260,137	-				+1.1
260,137	-				+0.3
260,137	-				-0.6
260,138	+				-0.8
260,142	-				+1.2
260,151	-				+2.9
260,152	+				-1.9
260,153	-				-0.4
260,153	-				+0.6
260,154	+				+1.5
260,154	+				-1.5
260,171	+				+0.1
260,171	+				+1.0
260,195	-				+1.1
260,195	-				-1.7
260,195	-				-0.9
260,196	+				-0.5
260,196	+				-1.7
260,196	+				-1.3
260,198	+				-2.1
260,202	-				+0.1
260,202	-				-2.4
260,202	-				-0.9
260,202	-				-1.3
260,203	+				-2.9
260,203	+				-1.7
260,206	+				+0.1
260,206	+				-0.9
260,214	+				+0.3
260,214	+				-1.7
260,221	+				-2.4
260,234	+				-2.5
260,249	-				+0.1
260,250	+				-4.2
260,260	-				+0.1
260,261	+				-2.5
260,261	+				+1.8
260,261	+				-3.8
260,261	+				+1.4
260,261	+				-4.2
260,261	+				-1.1
260,265	-				-3.0
260,309	-				-0.9
260,310	+				+1.1
260,310	+				+0.1
260,365	+				-0.1
260,365	+				-2.1
260,578	-		MMJJ_RS01350	0.23	-2.7
260,601	-		MMJJ_RS01350	0.25	-0.9
260,616	-		MMJJ_RS01350	0.26	-1.3
260,617	+		MMJJ_RS01350	0.26	-1.5
260,618	-		MMJJ_RS01350	0.27	-0.5
260,619	+		MMJJ_RS01350	0.27	-1.5
260,619	+		MMJJ_RS01350	0.27	-2.1
260,619	+				+0.1
260,692	-		MMJJ_RS01350	0.32	-1.3
260,692	-		MMJJ_RS01350	0.32	-1.3
260,693	+		MMJJ_RS01350	0.33	-1.3
260,776	-		MMJJ_RS01350	0.39	-1.9
260,849	+		MMJJ_RS01350	0.45	-3.1
260,933	-		MMJJ_RS01350	0.52	-2.1
260,947	+		MMJJ_RS01350	0.53	-2.3
260,971	+				+0.1
260,971	+				+1.1
261,026	-		MMJJ_RS01350	0.59	+0.5
261,238	+		MMJJ_RS01350	0.76	-2.5
261,255	-		MMJJ_RS01350	0.77	-1.5
261,256	+		MMJJ_RS01350	0.77	+0.5
261,369	+		MMJJ_RS01350	0.86	-0.9
261,380	+		MMJJ_RS01350	0.87	-0.3
261,422	+				+1.1
261,607	-				-1.3
261,733	+		MMJJ_RS01355	0.14	-0.5
261,733	+		MMJJ_RS01355	0.14	-0.9
261,805	-		MMJJ_RS01355	0.20	+1.1
261,921	-		MMJJ_RS01355	0.29	-0.5
262,135	+		MMJJ_RS01355	0.45	-0.5
262,137	+				-0.3
262,139	+		MMJJ_RS01355	0.46	-0.5
262,336	+		MMJJ_RS01355	0.61	-0.7
262,357	+				+1.1