Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01280 and MMJJ_RS01285 are separated by 252 nucleotides MMJJ_RS01285 and MMJJ_RS01290 are separated by 38 nucleotides MMJJ_RS01290 and MMJJ_RS01300 are separated by 381 nucleotides
MMJJ_RS01280: MMJJ_RS01280 - hydroxylamine reductase, at 246,224 to 247,864
_RS01280
MMJJ_RS01285: MMJJ_RS01285 - CopG family ribbon-helix-helix protein, at 248,117 to 248,524
_RS01285
MMJJ_RS01290: MMJJ_RS01290 - hypothetical protein, at 248,563 to 248,913
_RS01290
MMJJ_RS01300: MMJJ_RS01300 - MarR family transcriptional regulator, at 249,295 to 249,831
_RS01300
Position (kb) 248
249 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 247.134 kb on + strand, within MMJJ_RS01280 at 247.246 kb on - strand, within MMJJ_RS01280 at 247.246 kb on - strand, within MMJJ_RS01280 at 247.257 kb on - strand, within MMJJ_RS01280 at 247.410 kb on + strand, within MMJJ_RS01280 at 247.423 kb on - strand, within MMJJ_RS01280 at 247.424 kb on + strand, within MMJJ_RS01280 at 247.442 kb on - strand, within MMJJ_RS01280 at 247.574 kb on - strand, within MMJJ_RS01280 at 247.637 kb on + strand, within MMJJ_RS01280 at 247.667 kb on - strand, within MMJJ_RS01280 at 247.672 kb on - strand, within MMJJ_RS01280 at 247.672 kb on - strand, within MMJJ_RS01280 at 247.674 kb on - strand, within MMJJ_RS01280 at 247.674 kb on - strand, within MMJJ_RS01280 at 247.674 kb on - strand, within MMJJ_RS01280 at 247.675 kb on + strand, within MMJJ_RS01280 at 247.679 kb on + strand, within MMJJ_RS01280 at 247.683 kb on + strand, within MMJJ_RS01280 at 247.685 kb on + strand, within MMJJ_RS01280 at 247.740 kb on - strand at 247.745 kb on - strand at 247.746 kb on + strand at 247.837 kb on - strand at 247.864 kb on - strand at 247.908 kb on - strand at 247.908 kb on - strand at 247.911 kb on + strand at 247.914 kb on + strand at 247.949 kb on - strand at 247.960 kb on - strand at 248.019 kb on + strand at 248.068 kb on + strand at 248.126 kb on + strand at 248.129 kb on + strand at 248.139 kb on - strand at 248.155 kb on - strand at 248.173 kb on + strand, within MMJJ_RS01285 at 248.187 kb on + strand, within MMJJ_RS01285 at 248.208 kb on + strand, within MMJJ_RS01285 at 248.253 kb on - strand, within MMJJ_RS01285 at 248.253 kb on - strand, within MMJJ_RS01285 at 248.273 kb on - strand, within MMJJ_RS01285 at 248.396 kb on - strand, within MMJJ_RS01285 at 248.456 kb on - strand, within MMJJ_RS01285 at 248.457 kb on + strand, within MMJJ_RS01285 at 248.514 kb on + strand at 248.541 kb on + strand at 248.544 kb on - strand at 248.549 kb on + strand at 248.579 kb on + strand at 248.665 kb on - strand, within MMJJ_RS01290 at 248.665 kb on - strand, within MMJJ_RS01290 at 248.667 kb on - strand, within MMJJ_RS01290 at 248.668 kb on + strand, within MMJJ_RS01290 at 248.713 kb on - strand, within MMJJ_RS01290 at 248.714 kb on + strand, within MMJJ_RS01290 at 248.735 kb on - strand, within MMJJ_RS01290 at 248.739 kb on - strand, within MMJJ_RS01290 at 248.746 kb on + strand, within MMJJ_RS01290 at 248.746 kb on + strand, within MMJJ_RS01290 at 248.762 kb on - strand, within MMJJ_RS01290 at 248.764 kb on - strand, within MMJJ_RS01290 at 248.764 kb on - strand, within MMJJ_RS01290 at 248.774 kb on - strand, within MMJJ_RS01290 at 248.775 kb on + strand, within MMJJ_RS01290 at 248.775 kb on + strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.777 kb on + strand, within MMJJ_RS01290 at 248.777 kb on + strand, within MMJJ_RS01290 at 248.788 kb on - strand, within MMJJ_RS01290 at 248.793 kb on + strand, within MMJJ_RS01290 at 248.805 kb on - strand, within MMJJ_RS01290 at 248.806 kb on + strand, within MMJJ_RS01290 at 248.882 kb on + strand at 248.893 kb on - strand at 248.893 kb on - strand at 248.894 kb on + strand at 248.936 kb on + strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.941 kb on + strand at 248.943 kb on - strand at 248.943 kb on - strand at 248.943 kb on - strand at 248.944 kb on + strand at 248.944 kb on + strand at 248.945 kb on - strand at 248.945 kb on - strand at 248.946 kb on + strand at 248.958 kb on + strand at 248.958 kb on + strand at 248.963 kb on - strand at 248.963 kb on - strand at 249.004 kb on - strand at 249.013 kb on - strand at 249.017 kb on - strand at 249.025 kb on - strand at 249.025 kb on - strand at 249.065 kb on - strand at 249.065 kb on - strand at 249.074 kb on + strand at 249.094 kb on - strand at 249.132 kb on + strand at 249.137 kb on + strand at 249.140 kb on + strand at 249.151 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.154 kb on + strand at 249.171 kb on + strand at 249.171 kb on + strand at 249.171 kb on + strand at 249.210 kb on - strand at 249.268 kb on - strand at 249.269 kb on + strand at 249.270 kb on - strand at 249.276 kb on + strand at 249.281 kb on + strand at 249.281 kb on + strand at 249.314 kb on - strand at 249.314 kb on - strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.319 kb on - strand at 249.328 kb on - strand at 249.344 kb on - strand at 249.344 kb on - strand at 249.352 kb on + strand, within MMJJ_RS01300 at 249.352 kb on + strand, within MMJJ_RS01300 at 249.371 kb on - strand, within MMJJ_RS01300 at 249.455 kb on - strand, within MMJJ_RS01300 at 249.455 kb on - strand, within MMJJ_RS01300 at 249.499 kb on - strand, within MMJJ_RS01300 at 249.500 kb on + strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 247,134 + MMJJ_RS01280 0.55 -0.1 247,246 - MMJJ_RS01280 0.62 -2.3 247,246 - MMJJ_RS01280 0.62 -2.9 247,257 - MMJJ_RS01280 0.63 +2.2 247,410 + MMJJ_RS01280 0.72 -2.0 247,423 - MMJJ_RS01280 0.73 -1.6 247,424 + MMJJ_RS01280 0.73 +1.7 247,442 - MMJJ_RS01280 0.74 -1.0 247,574 - MMJJ_RS01280 0.82 +1.7 247,637 + MMJJ_RS01280 0.86 -2.5 247,667 - MMJJ_RS01280 0.88 +3.3 247,672 - MMJJ_RS01280 0.88 +1.2 247,672 - MMJJ_RS01280 0.88 -0.7 247,674 - MMJJ_RS01280 0.88 -2.1 247,674 - MMJJ_RS01280 0.88 +0.0 247,674 - MMJJ_RS01280 0.88 -1.5 247,675 + MMJJ_RS01280 0.88 +1.0 247,679 + MMJJ_RS01280 0.89 -0.0 247,683 + MMJJ_RS01280 0.89 -1.3 247,685 + MMJJ_RS01280 0.89 +0.5 247,740 - -2.0 247,745 - -1.6 247,746 + +2.7 247,837 - -1.4 247,864 - +3.4 247,908 - -2.2 247,908 - +1.7 247,911 + -1.3 247,914 + +4.2 247,949 - -2.8 247,960 - +1.4 248,019 + -1.5 248,068 + +0.1 248,126 + +0.9 248,129 + -2.8 248,139 - -1.3 248,155 - -1.8 248,173 + MMJJ_RS01285 0.14 -2.3 248,187 + MMJJ_RS01285 0.17 -0.8 248,208 + MMJJ_RS01285 0.22 -3.4 248,253 - MMJJ_RS01285 0.33 -2.0 248,253 - MMJJ_RS01285 0.33 -0.8 248,273 - MMJJ_RS01285 0.38 -0.6 248,396 - MMJJ_RS01285 0.68 +3.2 248,456 - MMJJ_RS01285 0.83 -2.1 248,457 + MMJJ_RS01285 0.83 -1.1 248,514 + +0.7 248,541 + -1.5 248,544 - +2.5 248,549 + +3.0 248,579 + -0.5 248,665 - MMJJ_RS01290 0.29 +2.0 248,665 - MMJJ_RS01290 0.29 +2.2 248,667 - MMJJ_RS01290 0.30 +2.3 248,668 + MMJJ_RS01290 0.30 -2.4 248,713 - MMJJ_RS01290 0.43 -0.2 248,714 + MMJJ_RS01290 0.43 -2.0 248,735 - MMJJ_RS01290 0.49 +2.3 248,739 - MMJJ_RS01290 0.50 +0.0 248,746 + MMJJ_RS01290 0.52 -0.7 248,746 + MMJJ_RS01290 0.52 -2.8 248,762 - MMJJ_RS01290 0.57 +1.7 248,764 - MMJJ_RS01290 0.57 -3.3 248,764 - MMJJ_RS01290 0.57 +0.9 248,774 - MMJJ_RS01290 0.60 -1.0 248,775 + MMJJ_RS01290 0.60 +3.2 248,775 + MMJJ_RS01290 0.60 +0.2 248,776 - MMJJ_RS01290 0.61 +1.3 248,776 - MMJJ_RS01290 0.61 -0.3 248,776 - MMJJ_RS01290 0.61 -2.6 248,777 + MMJJ_RS01290 0.61 -3.2 248,777 + MMJJ_RS01290 0.61 -2.2 248,788 - MMJJ_RS01290 0.64 +1.0 248,793 + MMJJ_RS01290 0.66 -2.5 248,805 - MMJJ_RS01290 0.69 +0.5 248,806 + MMJJ_RS01290 0.69 -1.3 248,882 + -3.7 248,893 - -3.1 248,893 - -1.0 248,894 + -2.1 248,936 + -1.8 248,940 - -1.3 248,940 - +1.7 248,940 - +0.0 248,940 - -2.2 248,941 + +3.3 248,943 - -0.1 248,943 - +0.8 248,943 - +2.0 248,944 + -1.0 248,944 + -1.1 248,945 - -2.3 248,945 - -1.3 248,946 + +1.1 248,958 + +0.5 248,958 + -4.4 248,963 - -1.5 248,963 - -0.0 249,004 - +2.5 249,013 - +2.1 249,017 - +3.4 249,025 - -0.6 249,025 - +0.1 249,065 - +0.2 249,065 - +0.4 249,074 + -1.9 249,094 - +2.0 249,132 + -0.8 249,137 + +0.2 249,140 + +2.7 249,151 - -2.0 249,153 - -3.0 249,153 - -2.3 249,153 - +0.1 249,153 - +1.2 249,154 + -1.0 249,171 + +4.0 249,171 + +1.6 249,171 + -0.8 249,210 - +0.7 249,268 - +1.9 249,269 + +4.1 249,270 - +0.9 249,276 + +0.2 249,281 + +1.9 249,281 + -2.0 249,314 - -2.4 249,314 - +2.8 249,315 + +2.1 249,315 + -3.0 249,315 + -2.3 249,315 + -0.0 249,315 + -2.3 249,319 - -0.7 249,328 - +1.7 249,344 - +4.2 249,344 - -3.5 249,352 + MMJJ_RS01300 0.11 +0.6 249,352 + MMJJ_RS01300 0.11 +0.4 249,371 - MMJJ_RS01300 0.14 +1.0 249,455 - MMJJ_RS01300 0.30 +0.5 249,455 - MMJJ_RS01300 0.30 +2.1 249,499 - MMJJ_RS01300 0.38 +0.5 249,500 + MMJJ_RS01300 0.38 +2.0 249,502 - MMJJ_RS01300 0.39 -1.3 249,502 - MMJJ_RS01300 0.39 -2.7 249,502 - MMJJ_RS01300 0.39 -2.4 249,503 + MMJJ_RS01300 0.39 -0.5 249,503 + MMJJ_RS01300 0.39 +2.0 249,503 + MMJJ_RS01300 0.39 +1.8 249,503 + MMJJ_RS01300 0.39 -2.4
Or see this region's nucleotide sequence