Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01240 and MMJJ_RS01245 overlap by 4 nucleotides MMJJ_RS01245 and MMJJ_RS01250 are separated by 36 nucleotides MMJJ_RS01250 and MMJJ_RS01255 are separated by 350 nucleotides
MMJJ_RS01240: MMJJ_RS01240 - excinuclease ABC subunit UvrC, at 239,108 to 240,691
_RS01240
MMJJ_RS01245: MMJJ_RS01245 - excinuclease ABC subunit UvrB, at 240,688 to 242,628
_RS01245
MMJJ_RS01250: MMJJ_RS01250 - hypothetical protein, at 242,665 to 242,898
_RS01250
MMJJ_RS01255: MMJJ_RS01255 - YqhA family protein, at 243,249 to 243,806
_RS01255
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 239.815 kb on + strand, within MMJJ_RS01240 at 239.866 kb on - strand, within MMJJ_RS01240 at 239.869 kb on + strand, within MMJJ_RS01240 at 239.964 kb on + strand, within MMJJ_RS01240 at 239.966 kb on - strand, within MMJJ_RS01240 at 239.996 kb on + strand at 239.998 kb on + strand, within MMJJ_RS01240 at 239.998 kb on + strand, within MMJJ_RS01240 at 240.032 kb on + strand, within MMJJ_RS01240 at 240.034 kb on - strand, within MMJJ_RS01240 at 240.034 kb on - strand, within MMJJ_RS01240 at 240.042 kb on + strand, within MMJJ_RS01240 at 240.066 kb on + strand, within MMJJ_RS01240 at 240.066 kb on + strand, within MMJJ_RS01240 at 240.101 kb on + strand, within MMJJ_RS01240 at 240.234 kb on - strand, within MMJJ_RS01240 at 240.250 kb on - strand, within MMJJ_RS01240 at 240.275 kb on + strand, within MMJJ_RS01240 at 240.298 kb on - strand, within MMJJ_RS01240 at 240.394 kb on - strand, within MMJJ_RS01240 at 240.402 kb on + strand, within MMJJ_RS01240 at 240.448 kb on - strand, within MMJJ_RS01240 at 240.449 kb on + strand, within MMJJ_RS01240 at 240.449 kb on + strand, within MMJJ_RS01240 at 240.551 kb on - strand at 240.606 kb on - strand at 240.654 kb on + strand at 240.668 kb on + strand at 240.711 kb on + strand at 240.796 kb on + strand at 240.838 kb on + strand at 240.895 kb on + strand, within MMJJ_RS01245 at 240.959 kb on + strand, within MMJJ_RS01245 at 240.974 kb on + strand, within MMJJ_RS01245 at 240.980 kb on + strand, within MMJJ_RS01245 at 240.997 kb on - strand, within MMJJ_RS01245 at 241.000 kb on + strand, within MMJJ_RS01245 at 241.018 kb on - strand, within MMJJ_RS01245 at 241.019 kb on + strand, within MMJJ_RS01245 at 241.020 kb on - strand, within MMJJ_RS01245 at 241.021 kb on + strand, within MMJJ_RS01245 at 241.106 kb on - strand, within MMJJ_RS01245 at 241.106 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.223 kb on - strand, within MMJJ_RS01245 at 241.260 kb on + strand, within MMJJ_RS01245 at 241.295 kb on - strand, within MMJJ_RS01245 at 241.295 kb on - strand, within MMJJ_RS01245 at 241.299 kb on - strand, within MMJJ_RS01245 at 241.417 kb on - strand, within MMJJ_RS01245 at 241.484 kb on - strand, within MMJJ_RS01245 at 241.485 kb on + strand, within MMJJ_RS01245 at 241.509 kb on + strand, within MMJJ_RS01245 at 241.663 kb on - strand, within MMJJ_RS01245 at 241.663 kb on - strand, within MMJJ_RS01245 at 241.688 kb on - strand, within MMJJ_RS01245 at 241.732 kb on - strand, within MMJJ_RS01245 at 241.732 kb on - strand, within MMJJ_RS01245 at 241.733 kb on + strand, within MMJJ_RS01245 at 241.795 kb on - strand, within MMJJ_RS01245 at 241.796 kb on + strand, within MMJJ_RS01245 at 241.796 kb on + strand, within MMJJ_RS01245 at 241.796 kb on + strand, within MMJJ_RS01245 at 241.835 kb on + strand, within MMJJ_RS01245 at 241.835 kb on + strand, within MMJJ_RS01245 at 241.843 kb on + strand, within MMJJ_RS01245 at 241.847 kb on - strand, within MMJJ_RS01245 at 241.883 kb on - strand, within MMJJ_RS01245 at 241.884 kb on + strand, within MMJJ_RS01245 at 241.884 kb on + strand, within MMJJ_RS01245 at 241.888 kb on + strand, within MMJJ_RS01245 at 241.904 kb on - strand, within MMJJ_RS01245 at 241.904 kb on - strand, within MMJJ_RS01245 at 241.905 kb on + strand, within MMJJ_RS01245 at 241.953 kb on + strand, within MMJJ_RS01245 at 241.980 kb on - strand, within MMJJ_RS01245 at 242.027 kb on - strand, within MMJJ_RS01245 at 242.032 kb on + strand, within MMJJ_RS01245 at 242.071 kb on - strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.121 kb on - strand, within MMJJ_RS01245 at 242.237 kb on - strand, within MMJJ_RS01245 at 242.331 kb on + strand, within MMJJ_RS01245 at 242.361 kb on - strand, within MMJJ_RS01245 at 242.447 kb on - strand at 242.468 kb on - strand at 242.486 kb on - strand at 242.545 kb on - strand at 242.546 kb on + strand at 242.631 kb on - strand at 242.649 kb on - strand at 242.678 kb on - strand at 242.679 kb on + strand at 242.693 kb on + strand, within MMJJ_RS01250 at 242.698 kb on - strand, within MMJJ_RS01250 at 242.719 kb on + strand, within MMJJ_RS01250 at 242.719 kb on + strand, within MMJJ_RS01250 at 242.731 kb on - strand, within MMJJ_RS01250 at 242.732 kb on + strand, within MMJJ_RS01250 at 242.732 kb on + strand, within MMJJ_RS01250 at 242.849 kb on - strand, within MMJJ_RS01250 at 242.849 kb on - strand, within MMJJ_RS01250 at 242.849 kb on - strand, within MMJJ_RS01250 at 242.854 kb on - strand, within MMJJ_RS01250 at 242.854 kb on - strand, within MMJJ_RS01250 at 242.890 kb on - strand at 242.891 kb on + strand at 242.920 kb on - strand at 242.934 kb on + strand at 242.937 kb on - strand at 242.940 kb on - strand at 242.940 kb on - strand at 242.941 kb on + strand at 242.941 kb on + strand at 242.942 kb on - strand at 242.943 kb on + strand at 242.943 kb on + strand at 242.945 kb on + strand at 242.945 kb on + strand at 242.945 kb on - strand at 242.966 kb on - strand at 242.966 kb on - strand at 242.966 kb on - strand at 242.969 kb on - strand at 242.969 kb on - strand at 242.969 kb on - strand at 242.970 kb on + strand at 242.971 kb on - strand at 242.972 kb on + strand at 242.986 kb on - strand at 243.019 kb on + strand at 243.025 kb on - strand at 243.025 kb on - strand at 243.026 kb on + strand at 243.030 kb on - strand at 243.030 kb on - strand at 243.031 kb on + strand at 243.031 kb on + strand at 243.036 kb on - strand at 243.037 kb on + strand at 243.103 kb on - strand at 243.103 kb on - strand at 243.103 kb on - strand at 243.118 kb on - strand at 243.121 kb on + strand at 243.121 kb on + strand at 243.121 kb on + strand at 243.123 kb on - strand at 243.123 kb on - strand at 243.124 kb on + strand at 243.124 kb on + strand at 243.124 kb on + strand at 243.124 kb on + strand at 243.147 kb on + strand at 243.160 kb on - strand at 243.165 kb on + strand at 243.168 kb on - strand at 243.169 kb on + strand at 243.169 kb on + strand at 243.173 kb on - strand at 243.174 kb on + strand at 243.177 kb on - strand at 243.177 kb on - strand at 243.178 kb on + strand at 243.214 kb on - strand at 243.217 kb on + strand at 243.224 kb on - strand at 243.225 kb on + strand at 243.236 kb on - strand at 243.236 kb on - strand at 243.248 kb on - strand at 243.293 kb on - strand at 243.296 kb on - strand at 243.296 kb on - strand at 243.297 kb on + strand at 243.353 kb on - strand, within MMJJ_RS01255 at 243.395 kb on - strand, within MMJJ_RS01255 at 243.395 kb on - strand, within MMJJ_RS01255 at 243.441 kb on + strand, within MMJJ_RS01255 at 243.459 kb on + strand, within MMJJ_RS01255 at 243.485 kb on + strand, within MMJJ_RS01255 at 243.487 kb on - strand, within MMJJ_RS01255 at 243.509 kb on + strand, within MMJJ_RS01255 at 243.520 kb on - strand, within MMJJ_RS01255 at 243.523 kb on - strand, within MMJJ_RS01255 at 243.532 kb on - strand, within MMJJ_RS01255 at 243.533 kb on + strand, within MMJJ_RS01255 at 243.545 kb on - strand, within MMJJ_RS01255 at 243.559 kb on + strand, within MMJJ_RS01255 at 243.559 kb on + strand, within MMJJ_RS01255 at 243.580 kb on - strand, within MMJJ_RS01255 at 243.615 kb on + strand, within MMJJ_RS01255 at 243.628 kb on + strand, within MMJJ_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 239,815 + MMJJ_RS01240 0.45 -0.3 239,866 - MMJJ_RS01240 0.48 -2.0 239,869 + MMJJ_RS01240 0.48 -2.4 239,964 + MMJJ_RS01240 0.54 +2.7 239,966 - MMJJ_RS01240 0.54 -3.2 239,996 + +0.0 239,998 + MMJJ_RS01240 0.56 -2.7 239,998 + MMJJ_RS01240 0.56 -0.2 240,032 + MMJJ_RS01240 0.58 +1.5 240,034 - MMJJ_RS01240 0.58 +0.0 240,034 - MMJJ_RS01240 0.58 -2.3 240,042 + MMJJ_RS01240 0.59 +0.8 240,066 + MMJJ_RS01240 0.60 +0.8 240,066 + MMJJ_RS01240 0.60 +1.5 240,101 + MMJJ_RS01240 0.63 +0.1 240,234 - MMJJ_RS01240 0.71 +1.4 240,250 - MMJJ_RS01240 0.72 -1.5 240,275 + MMJJ_RS01240 0.74 +6.1 240,298 - MMJJ_RS01240 0.75 +0.0 240,394 - MMJJ_RS01240 0.81 +0.7 240,402 + MMJJ_RS01240 0.82 -0.1 240,448 - MMJJ_RS01240 0.85 +1.3 240,449 + MMJJ_RS01240 0.85 +1.7 240,449 + MMJJ_RS01240 0.85 +1.2 240,551 - +0.3 240,606 - +2.9 240,654 + -1.5 240,668 + +0.3 240,711 + -0.3 240,796 + -1.6 240,838 + +0.1 240,895 + MMJJ_RS01245 0.11 +2.5 240,959 + MMJJ_RS01245 0.14 +3.6 240,974 + MMJJ_RS01245 0.15 +1.3 240,980 + MMJJ_RS01245 0.15 -2.0 240,997 - MMJJ_RS01245 0.16 +3.0 241,000 + MMJJ_RS01245 0.16 -2.4 241,018 - MMJJ_RS01245 0.17 -1.4 241,019 + MMJJ_RS01245 0.17 +0.4 241,020 - MMJJ_RS01245 0.17 -0.5 241,021 + MMJJ_RS01245 0.17 +0.7 241,106 - MMJJ_RS01245 0.22 -2.3 241,106 - MMJJ_RS01245 0.22 +0.0 241,130 - MMJJ_RS01245 0.23 +1.2 241,130 - MMJJ_RS01245 0.23 -2.6 241,130 - MMJJ_RS01245 0.23 -1.8 241,130 - MMJJ_RS01245 0.23 +1.7 241,130 - MMJJ_RS01245 0.23 -0.4 241,131 + MMJJ_RS01245 0.23 -1.0 241,131 + MMJJ_RS01245 0.23 -3.2 241,131 + MMJJ_RS01245 0.23 +1.0 241,131 + MMJJ_RS01245 0.23 -1.0 241,131 + MMJJ_RS01245 0.23 -0.3 241,131 + MMJJ_RS01245 0.23 +0.8 241,131 + MMJJ_RS01245 0.23 +1.3 241,132 - MMJJ_RS01245 0.23 +0.3 241,132 - MMJJ_RS01245 0.23 -2.0 241,132 - MMJJ_RS01245 0.23 -2.5 241,132 - MMJJ_RS01245 0.23 +0.0 241,132 - MMJJ_RS01245 0.23 -1.1 241,132 - MMJJ_RS01245 0.23 +1.0 241,133 + MMJJ_RS01245 0.23 -3.9 241,133 + MMJJ_RS01245 0.23 +0.9 241,133 + MMJJ_RS01245 0.23 +0.0 241,133 + MMJJ_RS01245 0.23 -1.1 241,223 - MMJJ_RS01245 0.28 +1.4 241,260 + MMJJ_RS01245 0.29 +0.3 241,295 - MMJJ_RS01245 0.31 -1.1 241,295 - MMJJ_RS01245 0.31 +0.1 241,299 - MMJJ_RS01245 0.31 +0.1 241,417 - MMJJ_RS01245 0.38 -1.1 241,484 - MMJJ_RS01245 0.41 +3.7 241,485 + MMJJ_RS01245 0.41 +1.3 241,509 + MMJJ_RS01245 0.42 -1.5 241,663 - MMJJ_RS01245 0.50 +2.9 241,663 - MMJJ_RS01245 0.50 +2.4 241,688 - MMJJ_RS01245 0.52 -0.4 241,732 - MMJJ_RS01245 0.54 -1.9 241,732 - MMJJ_RS01245 0.54 +2.4 241,733 + MMJJ_RS01245 0.54 -2.5 241,795 - MMJJ_RS01245 0.57 -1.8 241,796 + MMJJ_RS01245 0.57 -0.6 241,796 + MMJJ_RS01245 0.57 -1.3 241,796 + MMJJ_RS01245 0.57 +0.2 241,835 + MMJJ_RS01245 0.59 +2.1 241,835 + MMJJ_RS01245 0.59 +1.0 241,843 + MMJJ_RS01245 0.60 -1.1 241,847 - MMJJ_RS01245 0.60 +2.4 241,883 - MMJJ_RS01245 0.62 +0.2 241,884 + MMJJ_RS01245 0.62 -2.5 241,884 + MMJJ_RS01245 0.62 -0.4 241,888 + MMJJ_RS01245 0.62 -0.9 241,904 - MMJJ_RS01245 0.63 +1.2 241,904 - MMJJ_RS01245 0.63 -0.0 241,905 + MMJJ_RS01245 0.63 -4.3 241,953 + MMJJ_RS01245 0.65 -0.6 241,980 - MMJJ_RS01245 0.67 +3.9 242,027 - MMJJ_RS01245 0.69 -0.2 242,032 + MMJJ_RS01245 0.69 -2.4 242,071 - MMJJ_RS01245 0.71 -4.0 242,118 + MMJJ_RS01245 0.74 -3.2 242,118 + MMJJ_RS01245 0.74 -0.7 242,118 + MMJJ_RS01245 0.74 -0.0 242,118 + MMJJ_RS01245 0.74 -2.0 242,118 + MMJJ_RS01245 0.74 +1.7 242,121 - MMJJ_RS01245 0.74 +0.4 242,237 - MMJJ_RS01245 0.80 -0.7 242,331 + MMJJ_RS01245 0.85 +1.3 242,361 - MMJJ_RS01245 0.86 -0.6 242,447 - -0.8 242,468 - -2.8 242,486 - -0.6 242,545 - +0.0 242,546 + -1.5 242,631 - -1.9 242,649 - +2.2 242,678 - +3.2 242,679 + -3.1 242,693 + MMJJ_RS01250 0.12 -0.7 242,698 - MMJJ_RS01250 0.14 -1.1 242,719 + MMJJ_RS01250 0.23 +3.9 242,719 + MMJJ_RS01250 0.23 -1.0 242,731 - MMJJ_RS01250 0.28 -0.6 242,732 + MMJJ_RS01250 0.29 -1.0 242,732 + MMJJ_RS01250 0.29 +0.3 242,849 - MMJJ_RS01250 0.79 -0.6 242,849 - MMJJ_RS01250 0.79 -1.7 242,849 - MMJJ_RS01250 0.79 -0.4 242,854 - MMJJ_RS01250 0.81 -3.3 242,854 - MMJJ_RS01250 0.81 +0.0 242,890 - -1.0 242,891 + -1.8 242,920 - +0.1 242,934 + +5.2 242,937 - -1.8 242,940 - +0.6 242,940 - -1.3 242,941 + -0.1 242,941 + -2.3 242,942 - -1.5 242,943 + -0.2 242,943 + -1.3 242,945 + -2.0 242,945 + +2.4 242,945 - +0.2 242,966 - +2.5 242,966 - -1.5 242,966 - +0.2 242,969 - +1.1 242,969 - +1.6 242,969 - +0.3 242,970 + -2.9 242,971 - -1.7 242,972 + +0.2 242,986 - -0.6 243,019 + +1.4 243,025 - -1.0 243,025 - +2.2 243,026 + +1.0 243,030 - +0.7 243,030 - +2.1 243,031 + +1.4 243,031 + +0.3 243,036 - +1.0 243,037 + +0.9 243,103 - -3.3 243,103 - +1.6 243,103 - -1.3 243,118 - -0.6 243,121 + +3.1 243,121 + -1.4 243,121 + -0.3 243,123 - -0.9 243,123 - -0.6 243,124 + -0.6 243,124 + -3.4 243,124 + -1.8 243,124 + +1.4 243,147 + -2.0 243,160 - -1.2 243,165 + +2.0 243,168 - +0.9 243,169 + +3.2 243,169 + +0.0 243,173 - -0.4 243,174 + +2.5 243,177 - +2.2 243,177 - -2.3 243,178 + -1.6 243,214 - +3.4 243,217 + +1.4 243,224 - -2.4 243,225 + -0.3 243,236 - +2.9 243,236 - +1.0 243,248 - -0.4 243,293 - +3.5 243,296 - -1.0 243,296 - -2.6 243,297 + +2.3 243,353 - MMJJ_RS01255 0.19 -0.5 243,395 - MMJJ_RS01255 0.26 -0.1 243,395 - MMJJ_RS01255 0.26 +1.0 243,441 + MMJJ_RS01255 0.34 +0.8 243,459 + MMJJ_RS01255 0.38 +3.0 243,485 + MMJJ_RS01255 0.42 +1.1 243,487 - MMJJ_RS01255 0.43 +1.4 243,509 + MMJJ_RS01255 0.47 +2.0 243,520 - MMJJ_RS01255 0.49 -0.2 243,523 - MMJJ_RS01255 0.49 -1.0 243,532 - MMJJ_RS01255 0.51 +4.4 243,533 + MMJJ_RS01255 0.51 -1.0 243,545 - MMJJ_RS01255 0.53 +2.6 243,559 + MMJJ_RS01255 0.56 +0.4 243,559 + MMJJ_RS01255 0.56 +0.1 243,580 - MMJJ_RS01255 0.59 +3.1 243,615 + MMJJ_RS01255 0.66 +0.7 243,628 + MMJJ_RS01255 0.68 -0.1
Or see this region's nucleotide sequence