Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01235 and MMJJ_RS01240 are separated by 7 nucleotides MMJJ_RS01240 and MMJJ_RS01245 overlap by 4 nucleotides
MMJJ_RS01235: MMJJ_RS01235 - excinuclease ABC subunit UvrA, at 236,245 to 239,100
_RS01235
MMJJ_RS01240: MMJJ_RS01240 - excinuclease ABC subunit UvrC, at 239,108 to 240,691
_RS01240
MMJJ_RS01245: MMJJ_RS01245 - excinuclease ABC subunit UvrB, at 240,688 to 242,628
_RS01245
Position (kb) 239
240
241 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 238.181 kb on - strand, within MMJJ_RS01235 at 238.182 kb on + strand, within MMJJ_RS01235 at 238.187 kb on + strand, within MMJJ_RS01235 at 238.268 kb on + strand, within MMJJ_RS01235 at 238.275 kb on - strand, within MMJJ_RS01235 at 238.444 kb on - strand, within MMJJ_RS01235 at 238.445 kb on + strand, within MMJJ_RS01235 at 238.467 kb on - strand, within MMJJ_RS01235 at 238.566 kb on - strand, within MMJJ_RS01235 at 238.566 kb on - strand, within MMJJ_RS01235 at 238.576 kb on + strand, within MMJJ_RS01235 at 238.576 kb on + strand, within MMJJ_RS01235 at 238.634 kb on - strand, within MMJJ_RS01235 at 238.668 kb on - strand, within MMJJ_RS01235 at 238.675 kb on + strand, within MMJJ_RS01235 at 238.693 kb on + strand, within MMJJ_RS01235 at 238.726 kb on - strand, within MMJJ_RS01235 at 238.727 kb on + strand, within MMJJ_RS01235 at 238.731 kb on - strand, within MMJJ_RS01235 at 238.731 kb on - strand, within MMJJ_RS01235 at 238.732 kb on + strand, within MMJJ_RS01235 at 238.737 kb on + strand, within MMJJ_RS01235 at 238.827 kb on + strand at 238.828 kb on - strand at 238.828 kb on - strand at 238.829 kb on + strand at 238.829 kb on + strand at 238.829 kb on + strand at 238.832 kb on - strand at 238.922 kb on - strand at 238.923 kb on + strand at 238.923 kb on + strand at 238.949 kb on - strand at 239.055 kb on + strand at 239.104 kb on - strand at 239.112 kb on - strand at 239.113 kb on + strand at 239.147 kb on - strand at 239.149 kb on - strand at 239.154 kb on + strand at 239.215 kb on - strand at 239.219 kb on + strand at 239.292 kb on - strand, within MMJJ_RS01240 at 239.349 kb on + strand, within MMJJ_RS01240 at 239.360 kb on - strand, within MMJJ_RS01240 at 239.361 kb on + strand, within MMJJ_RS01240 at 239.368 kb on + strand, within MMJJ_RS01240 at 239.374 kb on + strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.396 kb on - strand, within MMJJ_RS01240 at 239.397 kb on + strand, within MMJJ_RS01240 at 239.397 kb on + strand, within MMJJ_RS01240 at 239.398 kb on - strand, within MMJJ_RS01240 at 239.403 kb on + strand, within MMJJ_RS01240 at 239.403 kb on + strand, within MMJJ_RS01240 at 239.447 kb on + strand, within MMJJ_RS01240 at 239.479 kb on - strand, within MMJJ_RS01240 at 239.502 kb on + strand, within MMJJ_RS01240 at 239.502 kb on + strand, within MMJJ_RS01240 at 239.581 kb on - strand, within MMJJ_RS01240 at 239.606 kb on + strand, within MMJJ_RS01240 at 239.606 kb on + strand, within MMJJ_RS01240 at 239.815 kb on + strand, within MMJJ_RS01240 at 239.866 kb on - strand, within MMJJ_RS01240 at 239.869 kb on + strand, within MMJJ_RS01240 at 239.964 kb on + strand, within MMJJ_RS01240 at 239.966 kb on - strand, within MMJJ_RS01240 at 239.996 kb on + strand at 239.998 kb on + strand, within MMJJ_RS01240 at 239.998 kb on + strand, within MMJJ_RS01240 at 240.032 kb on + strand, within MMJJ_RS01240 at 240.034 kb on - strand, within MMJJ_RS01240 at 240.034 kb on - strand, within MMJJ_RS01240 at 240.042 kb on + strand, within MMJJ_RS01240 at 240.066 kb on + strand, within MMJJ_RS01240 at 240.066 kb on + strand, within MMJJ_RS01240 at 240.101 kb on + strand, within MMJJ_RS01240 at 240.234 kb on - strand, within MMJJ_RS01240 at 240.250 kb on - strand, within MMJJ_RS01240 at 240.275 kb on + strand, within MMJJ_RS01240 at 240.298 kb on - strand, within MMJJ_RS01240 at 240.394 kb on - strand, within MMJJ_RS01240 at 240.402 kb on + strand, within MMJJ_RS01240 at 240.448 kb on - strand, within MMJJ_RS01240 at 240.449 kb on + strand, within MMJJ_RS01240 at 240.449 kb on + strand, within MMJJ_RS01240 at 240.551 kb on - strand at 240.606 kb on - strand at 240.654 kb on + strand at 240.668 kb on + strand at 240.711 kb on + strand at 240.796 kb on + strand at 240.838 kb on + strand at 240.895 kb on + strand, within MMJJ_RS01245 at 240.959 kb on + strand, within MMJJ_RS01245 at 240.974 kb on + strand, within MMJJ_RS01245 at 240.980 kb on + strand, within MMJJ_RS01245 at 240.997 kb on - strand, within MMJJ_RS01245 at 241.000 kb on + strand, within MMJJ_RS01245 at 241.018 kb on - strand, within MMJJ_RS01245 at 241.019 kb on + strand, within MMJJ_RS01245 at 241.020 kb on - strand, within MMJJ_RS01245 at 241.021 kb on + strand, within MMJJ_RS01245 at 241.106 kb on - strand, within MMJJ_RS01245 at 241.106 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.130 kb on - strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.131 kb on + strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.132 kb on - strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.133 kb on + strand, within MMJJ_RS01245 at 241.223 kb on - strand, within MMJJ_RS01245 at 241.260 kb on + strand, within MMJJ_RS01245 at 241.295 kb on - strand, within MMJJ_RS01245 at 241.295 kb on - strand, within MMJJ_RS01245 at 241.299 kb on - strand, within MMJJ_RS01245 at 241.417 kb on - strand, within MMJJ_RS01245 at 241.484 kb on - strand, within MMJJ_RS01245 at 241.485 kb on + strand, within MMJJ_RS01245 at 241.509 kb on + strand, within MMJJ_RS01245 at 241.663 kb on - strand, within MMJJ_RS01245 at 241.663 kb on - strand, within MMJJ_RS01245 at 241.688 kb on - strand, within MMJJ_RS01245
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 238,181 - MMJJ_RS01235 0.68 +3.0 238,182 + MMJJ_RS01235 0.68 -3.3 238,187 + MMJJ_RS01235 0.68 +1.4 238,268 + MMJJ_RS01235 0.71 -2.7 238,275 - MMJJ_RS01235 0.71 -1.5 238,444 - MMJJ_RS01235 0.77 +5.4 238,445 + MMJJ_RS01235 0.77 -1.3 238,467 - MMJJ_RS01235 0.78 -0.2 238,566 - MMJJ_RS01235 0.81 -0.3 238,566 - MMJJ_RS01235 0.81 -2.4 238,576 + MMJJ_RS01235 0.82 +2.8 238,576 + MMJJ_RS01235 0.82 -1.2 238,634 - MMJJ_RS01235 0.84 +0.3 238,668 - MMJJ_RS01235 0.85 +1.3 238,675 + MMJJ_RS01235 0.85 +0.9 238,693 + MMJJ_RS01235 0.86 +1.4 238,726 - MMJJ_RS01235 0.87 +1.2 238,727 + MMJJ_RS01235 0.87 -2.0 238,731 - MMJJ_RS01235 0.87 -1.1 238,731 - MMJJ_RS01235 0.87 +1.5 238,732 + MMJJ_RS01235 0.87 -2.7 238,737 + MMJJ_RS01235 0.87 -0.2 238,827 + -1.0 238,828 - -0.7 238,828 - -0.6 238,829 + -1.1 238,829 + -1.0 238,829 + +0.1 238,832 - +0.8 238,922 - +0.0 238,923 + +0.7 238,923 + -2.3 238,949 - +0.9 239,055 + -0.3 239,104 - +1.4 239,112 - +0.2 239,113 + +1.0 239,147 - -0.7 239,149 - -1.8 239,154 + -0.8 239,215 - +1.6 239,219 + -1.3 239,292 - MMJJ_RS01240 0.12 -2.0 239,349 + MMJJ_RS01240 0.15 -3.5 239,360 - MMJJ_RS01240 0.16 -0.2 239,361 + MMJJ_RS01240 0.16 -0.5 239,368 + MMJJ_RS01240 0.16 +0.0 239,374 + MMJJ_RS01240 0.17 +0.3 239,396 - MMJJ_RS01240 0.18 -0.8 239,396 - MMJJ_RS01240 0.18 +1.3 239,396 - MMJJ_RS01240 0.18 -2.5 239,396 - MMJJ_RS01240 0.18 -3.3 239,396 - MMJJ_RS01240 0.18 -1.0 239,397 + MMJJ_RS01240 0.18 -0.9 239,397 + MMJJ_RS01240 0.18 -0.7 239,398 - MMJJ_RS01240 0.18 +0.0 239,403 + MMJJ_RS01240 0.19 -2.6 239,403 + MMJJ_RS01240 0.19 -0.6 239,447 + MMJJ_RS01240 0.21 +0.5 239,479 - MMJJ_RS01240 0.23 +0.1 239,502 + MMJJ_RS01240 0.25 -1.5 239,502 + MMJJ_RS01240 0.25 +0.4 239,581 - MMJJ_RS01240 0.30 +0.8 239,606 + MMJJ_RS01240 0.31 -1.9 239,606 + MMJJ_RS01240 0.31 -1.5 239,815 + MMJJ_RS01240 0.45 -0.3 239,866 - MMJJ_RS01240 0.48 -2.0 239,869 + MMJJ_RS01240 0.48 -2.4 239,964 + MMJJ_RS01240 0.54 +2.7 239,966 - MMJJ_RS01240 0.54 -3.2 239,996 + +0.0 239,998 + MMJJ_RS01240 0.56 -2.7 239,998 + MMJJ_RS01240 0.56 -0.2 240,032 + MMJJ_RS01240 0.58 +1.5 240,034 - MMJJ_RS01240 0.58 +0.0 240,034 - MMJJ_RS01240 0.58 -2.3 240,042 + MMJJ_RS01240 0.59 +0.8 240,066 + MMJJ_RS01240 0.60 +0.8 240,066 + MMJJ_RS01240 0.60 +1.5 240,101 + MMJJ_RS01240 0.63 +0.1 240,234 - MMJJ_RS01240 0.71 +1.4 240,250 - MMJJ_RS01240 0.72 -1.5 240,275 + MMJJ_RS01240 0.74 +6.1 240,298 - MMJJ_RS01240 0.75 +0.0 240,394 - MMJJ_RS01240 0.81 +0.7 240,402 + MMJJ_RS01240 0.82 -0.1 240,448 - MMJJ_RS01240 0.85 +1.3 240,449 + MMJJ_RS01240 0.85 +1.7 240,449 + MMJJ_RS01240 0.85 +1.2 240,551 - +0.3 240,606 - +2.9 240,654 + -1.5 240,668 + +0.3 240,711 + -0.3 240,796 + -1.6 240,838 + +0.1 240,895 + MMJJ_RS01245 0.11 +2.5 240,959 + MMJJ_RS01245 0.14 +3.6 240,974 + MMJJ_RS01245 0.15 +1.3 240,980 + MMJJ_RS01245 0.15 -2.0 240,997 - MMJJ_RS01245 0.16 +3.0 241,000 + MMJJ_RS01245 0.16 -2.4 241,018 - MMJJ_RS01245 0.17 -1.4 241,019 + MMJJ_RS01245 0.17 +0.4 241,020 - MMJJ_RS01245 0.17 -0.5 241,021 + MMJJ_RS01245 0.17 +0.7 241,106 - MMJJ_RS01245 0.22 -2.3 241,106 - MMJJ_RS01245 0.22 +0.0 241,130 - MMJJ_RS01245 0.23 +1.2 241,130 - MMJJ_RS01245 0.23 -2.6 241,130 - MMJJ_RS01245 0.23 -1.8 241,130 - MMJJ_RS01245 0.23 +1.7 241,130 - MMJJ_RS01245 0.23 -0.4 241,131 + MMJJ_RS01245 0.23 -1.0 241,131 + MMJJ_RS01245 0.23 -3.2 241,131 + MMJJ_RS01245 0.23 +1.0 241,131 + MMJJ_RS01245 0.23 -1.0 241,131 + MMJJ_RS01245 0.23 -0.3 241,131 + MMJJ_RS01245 0.23 +0.8 241,131 + MMJJ_RS01245 0.23 +1.3 241,132 - MMJJ_RS01245 0.23 +0.3 241,132 - MMJJ_RS01245 0.23 -2.0 241,132 - MMJJ_RS01245 0.23 -2.5 241,132 - MMJJ_RS01245 0.23 +0.0 241,132 - MMJJ_RS01245 0.23 -1.1 241,132 - MMJJ_RS01245 0.23 +1.0 241,133 + MMJJ_RS01245 0.23 -3.9 241,133 + MMJJ_RS01245 0.23 +0.9 241,133 + MMJJ_RS01245 0.23 +0.0 241,133 + MMJJ_RS01245 0.23 -1.1 241,223 - MMJJ_RS01245 0.28 +1.4 241,260 + MMJJ_RS01245 0.29 +0.3 241,295 - MMJJ_RS01245 0.31 -1.1 241,295 - MMJJ_RS01245 0.31 +0.1 241,299 - MMJJ_RS01245 0.31 +0.1 241,417 - MMJJ_RS01245 0.38 -1.1 241,484 - MMJJ_RS01245 0.41 +3.7 241,485 + MMJJ_RS01245 0.41 +1.3 241,509 + MMJJ_RS01245 0.42 -1.5 241,663 - MMJJ_RS01245 0.50 +2.9 241,663 - MMJJ_RS01245 0.50 +2.4 241,688 - MMJJ_RS01245 0.52 -0.4
Or see this region's nucleotide sequence