Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01090

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01085 and MMJJ_RS01090 are separated by 660 nucleotidesMMJJ_RS01090 and MMJJ_RS01095 are separated by 130 nucleotides MMJJ_RS01080: MMJJ_RS01080 - hypothetical protein, at 209,244 to 209,834 _RS01080 MMJJ_RS01085: MMJJ_RS01085 - hypothetical protein, at 209,765 to 210,127 _RS01085 MMJJ_RS01090: MMJJ_RS01090 - hypothetical protein, at 210,788 to 211,474 _RS01090 MMJJ_RS01095: MMJJ_RS01095 - site-specific integrase, at 211,605 to 212,603 _RS01095 Position (kb) 210 211 212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 209.795 kb on - strandat 209.800 kb on - strandat 209.801 kb on + strandat 209.801 kb on + strandat 209.802 kb on - strandat 209.802 kb on - strandat 209.803 kb on + strandat 209.803 kb on + strandat 209.847 kb on - strand, within MMJJ_RS01085at 209.847 kb on - strand, within MMJJ_RS01085at 209.848 kb on + strand, within MMJJ_RS01085at 209.848 kb on + strand, within MMJJ_RS01085at 209.867 kb on + strand, within MMJJ_RS01085at 209.961 kb on + strand, within MMJJ_RS01085at 210.067 kb on - strand, within MMJJ_RS01085at 210.101 kb on - strandat 210.160 kb on - strandat 210.196 kb on - strandat 210.408 kb on + strandat 210.410 kb on + strandat 210.412 kb on + strandat 210.428 kb on - strandat 210.428 kb on - strandat 210.429 kb on + strandat 210.447 kb on - strandat 210.459 kb on - strandat 210.461 kb on - strandat 210.461 kb on - strandat 210.461 kb on - strandat 210.490 kb on + strandat 210.501 kb on + strandat 210.517 kb on - strandat 210.761 kb on - strandat 210.762 kb on + strandat 210.762 kb on + strandat 210.762 kb on + strandat 210.805 kb on - strandat 210.806 kb on + strandat 210.823 kb on - strandat 210.824 kb on + strandat 210.831 kb on - strandat 210.832 kb on + strandat 210.848 kb on - strandat 210.849 kb on + strandat 210.853 kb on - strandat 210.858 kb on + strand, within MMJJ_RS01090at 210.932 kb on + strand, within MMJJ_RS01090at 211.193 kb on + strand, within MMJJ_RS01090at 211.215 kb on - strand, within MMJJ_RS01090at 211.238 kb on + strand, within MMJJ_RS01090at 211.240 kb on + strand, within MMJJ_RS01090at 211.240 kb on + strand, within MMJJ_RS01090at 211.240 kb on + strand, within MMJJ_RS01090at 211.262 kb on + strand, within MMJJ_RS01090at 211.264 kb on - strand, within MMJJ_RS01090at 211.282 kb on - strand, within MMJJ_RS01090at 211.297 kb on - strand, within MMJJ_RS01090at 211.297 kb on - strand, within MMJJ_RS01090at 211.298 kb on + strand, within MMJJ_RS01090at 211.298 kb on + strand, within MMJJ_RS01090at 211.298 kb on + strand, within MMJJ_RS01090at 211.403 kb on - strand, within MMJJ_RS01090at 211.442 kb on + strandat 211.475 kb on + strandat 211.496 kb on - strandat 211.500 kb on + strandat 211.500 kb on + strandat 211.502 kb on + strandat 211.502 kb on + strandat 211.504 kb on + strandat 211.507 kb on - strandat 211.507 kb on - strandat 211.508 kb on + strandat 211.508 kb on + strandat 211.510 kb on + strandat 211.541 kb on - strandat 211.542 kb on + strandat 211.546 kb on + strandat 211.639 kb on - strandat 211.640 kb on + strandat 211.640 kb on + strandat 211.731 kb on + strand, within MMJJ_RS01095at 211.742 kb on - strand, within MMJJ_RS01095at 211.742 kb on - strand, within MMJJ_RS01095at 211.743 kb on + strand, within MMJJ_RS01095at 211.743 kb on + strand, within MMJJ_RS01095at 211.853 kb on - strand, within MMJJ_RS01095at 211.854 kb on + strand, within MMJJ_RS01095at 211.893 kb on + strand, within MMJJ_RS01095at 211.943 kb on - strand, within MMJJ_RS01095at 211.944 kb on + strand, within MMJJ_RS01095at 211.944 kb on + strand, within MMJJ_RS01095at 212.095 kb on - strand, within MMJJ_RS01095at 212.145 kb on + strand, within MMJJ_RS01095at 212.151 kb on + strand, within MMJJ_RS01095at 212.158 kb on - strand, within MMJJ_RS01095at 212.159 kb on + strand, within MMJJ_RS01095at 212.159 kb on + strand, within MMJJ_RS01095at 212.237 kb on - strand, within MMJJ_RS01095at 212.367 kb on - strand, within MMJJ_RS01095at 212.368 kb on + strand, within MMJJ_RS01095at 212.440 kb on - strand, within MMJJ_RS01095at 212.440 kb on - strand, within MMJJ_RS01095at 212.467 kb on - strand, within MMJJ_RS01095at 212.467 kb on - strand, within MMJJ_RS01095at 212.468 kb on + strand, within MMJJ_RS01095at 212.468 kb on + strand, within MMJJ_RS01095

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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209,795 - +1.3
209,800 - +1.3
209,801 + -2.3
209,801 + -2.4
209,802 - +1.5
209,802 - +1.2
209,803 + -3.4
209,803 + -0.9
209,847 - MMJJ_RS01085 0.23 -0.7
209,847 - MMJJ_RS01085 0.23 +0.9
209,848 + MMJJ_RS01085 0.23 -1.0
209,848 + MMJJ_RS01085 0.23 -0.2
209,867 + MMJJ_RS01085 0.28 +1.9
209,961 + MMJJ_RS01085 0.54 -0.9
210,067 - MMJJ_RS01085 0.83 -0.3
210,101 - -4.1
210,160 - -0.0
210,196 - -1.0
210,408 + -2.0
210,410 + +4.2
210,412 + +3.2
210,428 - +1.9
210,428 - +0.0
210,429 + -1.8
210,447 - +2.5
210,459 - +0.0
210,461 - -2.9
210,461 - +1.9
210,461 - -1.0
210,490 + -1.8
210,501 + -1.4
210,517 - +0.6
210,761 - +0.8
210,762 + +1.9
210,762 + +0.9
210,762 + +1.9
210,805 - -0.4
210,806 + -1.3
210,823 - +1.2
210,824 + +0.1
210,831 - -1.3
210,832 + +0.3
210,848 - +1.2
210,849 + -2.6
210,853 - +2.3
210,858 + MMJJ_RS01090 0.10 +3.4
210,932 + MMJJ_RS01090 0.21 +1.8
211,193 + MMJJ_RS01090 0.59 -1.3
211,215 - MMJJ_RS01090 0.62 +0.0
211,238 + MMJJ_RS01090 0.66 -1.7
211,240 + MMJJ_RS01090 0.66 +4.6
211,240 + MMJJ_RS01090 0.66 -2.3
211,240 + MMJJ_RS01090 0.66 -0.3
211,262 + MMJJ_RS01090 0.69 +4.6
211,264 - MMJJ_RS01090 0.69 -0.2
211,282 - MMJJ_RS01090 0.72 +1.5
211,297 - MMJJ_RS01090 0.74 +0.2
211,297 - MMJJ_RS01090 0.74 -1.6
211,298 + MMJJ_RS01090 0.74 +1.3
211,298 + MMJJ_RS01090 0.74 -0.6
211,298 + MMJJ_RS01090 0.74 -0.1
211,403 - MMJJ_RS01090 0.90 -2.1
211,442 + -2.1
211,475 + -1.1
211,496 - +2.9
211,500 + -0.6
211,500 + -2.0
211,502 + -3.1
211,502 + +0.0
211,504 + -0.4
211,507 - -0.7
211,507 - -1.2
211,508 + -3.2
211,508 + +0.4
211,510 + +2.1
211,541 - +2.2
211,542 + -3.1
211,546 + +0.8
211,639 - +3.7
211,640 + +2.3
211,640 + +0.1
211,731 + MMJJ_RS01095 0.13 -0.5
211,742 - MMJJ_RS01095 0.14 +2.3
211,742 - MMJJ_RS01095 0.14 +0.9
211,743 + MMJJ_RS01095 0.14 +0.8
211,743 + MMJJ_RS01095 0.14 -0.6
211,853 - MMJJ_RS01095 0.25 -2.3
211,854 + MMJJ_RS01095 0.25 +1.8
211,893 + MMJJ_RS01095 0.29 +2.4
211,943 - MMJJ_RS01095 0.34 -1.8
211,944 + MMJJ_RS01095 0.34 +0.8
211,944 + MMJJ_RS01095 0.34 +2.1
212,095 - MMJJ_RS01095 0.49 +3.1
212,145 + MMJJ_RS01095 0.54 -2.4
212,151 + MMJJ_RS01095 0.55 -2.3
212,158 - MMJJ_RS01095 0.55 +3.5
212,159 + MMJJ_RS01095 0.55 -2.1
212,159 + MMJJ_RS01095 0.55 -3.8
212,237 - MMJJ_RS01095 0.63 -0.1
212,367 - MMJJ_RS01095 0.76 +1.2
212,368 + MMJJ_RS01095 0.76 +1.1
212,440 - MMJJ_RS01095 0.84 -1.1
212,440 - MMJJ_RS01095 0.84 +0.9
212,467 - MMJJ_RS01095 0.86 +0.6
212,467 - MMJJ_RS01095 0.86 -0.0
212,468 + MMJJ_RS01095 0.86 +3.0
212,468 + MMJJ_RS01095 0.86 -2.4

Or see this region's nucleotide sequence