Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00960

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00950 and MMJJ_RS00955 are separated by 30 nucleotidesMMJJ_RS00955 and MMJJ_RS00960 are separated by 57 nucleotidesMMJJ_RS00960 and MMJJ_RS00965 are separated by 318 nucleotidesMMJJ_RS00965 and MMJJ_RS00970 are separated by 89 nucleotides MMJJ_RS00950: MMJJ_RS00950 - DUF111 family protein, at 184,068 to 184,787 _RS00950 MMJJ_RS00955: MMJJ_RS00955 - flavodoxin, at 184,818 to 185,353 _RS00955 MMJJ_RS00960: MMJJ_RS00960 - flavodoxin family protein, at 185,411 to 186,046 _RS00960 MMJJ_RS00965: MMJJ_RS00965 - cyclophilin-like fold protein, at 186,365 to 186,880 _RS00965 MMJJ_RS00970: MMJJ_RS00970 - aldo/keto reductase, at 186,970 to 188,082 _RS00970 Position (kb) 185 186 187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 184.554 kb on - strand, within MMJJ_RS00950at 184.555 kb on + strand, within MMJJ_RS00950at 184.556 kb on - strand, within MMJJ_RS00950at 184.556 kb on - strand, within MMJJ_RS00950at 184.557 kb on + strand, within MMJJ_RS00950at 184.557 kb on + strand, within MMJJ_RS00950at 184.563 kb on - strand, within MMJJ_RS00950at 184.577 kb on + strand, within MMJJ_RS00950at 184.743 kb on + strandat 184.775 kb on - strandat 184.830 kb on - strandat 184.935 kb on + strand, within MMJJ_RS00955at 184.973 kb on - strand, within MMJJ_RS00955at 184.985 kb on - strand, within MMJJ_RS00955at 185.008 kb on - strand, within MMJJ_RS00955at 185.024 kb on - strand, within MMJJ_RS00955at 185.024 kb on - strand, within MMJJ_RS00955at 185.068 kb on + strand, within MMJJ_RS00955at 185.073 kb on - strand, within MMJJ_RS00955at 185.074 kb on + strand, within MMJJ_RS00955at 185.074 kb on + strand, within MMJJ_RS00955at 185.074 kb on + strand, within MMJJ_RS00955at 185.093 kb on - strand, within MMJJ_RS00955at 185.096 kb on - strand, within MMJJ_RS00955at 185.097 kb on + strand, within MMJJ_RS00955at 185.112 kb on - strand, within MMJJ_RS00955at 185.159 kb on + strand, within MMJJ_RS00955at 185.182 kb on + strand, within MMJJ_RS00955at 185.189 kb on - strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.261 kb on - strand, within MMJJ_RS00955at 185.261 kb on - strand, within MMJJ_RS00955at 185.292 kb on - strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.296 kb on - strand, within MMJJ_RS00955at 185.297 kb on + strand, within MMJJ_RS00955at 185.300 kb on + strandat 185.357 kb on + strandat 185.462 kb on - strandat 185.488 kb on - strand, within MMJJ_RS00960at 185.509 kb on - strand, within MMJJ_RS00960at 185.509 kb on - strand, within MMJJ_RS00960at 185.558 kb on - strand, within MMJJ_RS00960at 185.596 kb on + strand, within MMJJ_RS00960at 185.599 kb on - strand, within MMJJ_RS00960at 185.600 kb on + strand, within MMJJ_RS00960at 185.600 kb on + strand, within MMJJ_RS00960at 185.639 kb on + strand, within MMJJ_RS00960at 185.730 kb on + strand, within MMJJ_RS00960at 185.740 kb on - strand, within MMJJ_RS00960at 185.742 kb on - strand, within MMJJ_RS00960at 185.743 kb on + strand, within MMJJ_RS00960at 185.770 kb on - strand, within MMJJ_RS00960at 185.837 kb on + strand, within MMJJ_RS00960at 185.852 kb on - strand, within MMJJ_RS00960at 185.858 kb on + strand, within MMJJ_RS00960at 185.896 kb on - strand, within MMJJ_RS00960at 185.905 kb on - strand, within MMJJ_RS00960at 185.914 kb on - strand, within MMJJ_RS00960at 185.937 kb on - strand, within MMJJ_RS00960at 186.013 kb on - strandat 186.137 kb on - strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.152 kb on - strandat 186.159 kb on + strandat 186.165 kb on + strandat 186.166 kb on - strandat 186.167 kb on + strandat 186.177 kb on + strandat 186.184 kb on - strandat 186.189 kb on - strandat 186.189 kb on - strandat 186.190 kb on + strandat 186.194 kb on - strandat 186.194 kb on - strandat 186.246 kb on - strandat 186.246 kb on - strandat 186.339 kb on - strandat 186.341 kb on - strandat 186.387 kb on + strandat 186.387 kb on + strandat 186.388 kb on - strandat 186.389 kb on + strandat 186.405 kb on + strandat 186.405 kb on + strandat 186.415 kb on - strandat 186.415 kb on - strandat 186.483 kb on - strand, within MMJJ_RS00965at 186.511 kb on - strand, within MMJJ_RS00965at 186.512 kb on + strand, within MMJJ_RS00965at 186.521 kb on - strand, within MMJJ_RS00965at 186.521 kb on - strand, within MMJJ_RS00965at 186.522 kb on + strand, within MMJJ_RS00965at 186.522 kb on + strand, within MMJJ_RS00965at 186.522 kb on + strand, within MMJJ_RS00965at 186.523 kb on - strand, within MMJJ_RS00965at 186.523 kb on - strand, within MMJJ_RS00965at 186.548 kb on - strand, within MMJJ_RS00965at 186.548 kb on - strand, within MMJJ_RS00965at 186.584 kb on - strand, within MMJJ_RS00965at 186.606 kb on - strand, within MMJJ_RS00965at 186.611 kb on + strand, within MMJJ_RS00965at 186.652 kb on - strand, within MMJJ_RS00965at 186.674 kb on - strand, within MMJJ_RS00965at 186.694 kb on - strand, within MMJJ_RS00965at 186.772 kb on - strand, within MMJJ_RS00965at 186.785 kb on + strand, within MMJJ_RS00965at 186.804 kb on - strand, within MMJJ_RS00965at 186.852 kb on + strandat 186.863 kb on + strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.936 kb on + strandat 186.961 kb on + strandat 187.002 kb on + strandat 187.036 kb on - strandat 187.037 kb on + strandat 187.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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184,554 - MMJJ_RS00950 0.68 +0.5
184,555 + MMJJ_RS00950 0.68 -1.8
184,556 - MMJJ_RS00950 0.68 -0.4
184,556 - MMJJ_RS00950 0.68 +1.3
184,557 + MMJJ_RS00950 0.68 +1.4
184,557 + MMJJ_RS00950 0.68 +0.1
184,563 - MMJJ_RS00950 0.69 -3.2
184,577 + MMJJ_RS00950 0.71 -2.1
184,743 + -2.6
184,775 - +0.6
184,830 - -2.9
184,935 + MMJJ_RS00955 0.22 -1.0
184,973 - MMJJ_RS00955 0.29 -1.0
184,985 - MMJJ_RS00955 0.31 +0.0
185,008 - MMJJ_RS00955 0.35 -3.0
185,024 - MMJJ_RS00955 0.38 -1.7
185,024 - MMJJ_RS00955 0.38 -1.3
185,068 + MMJJ_RS00955 0.47 +2.9
185,073 - MMJJ_RS00955 0.48 +1.9
185,074 + MMJJ_RS00955 0.48 -2.2
185,074 + MMJJ_RS00955 0.48 +0.0
185,074 + MMJJ_RS00955 0.48 -0.2
185,093 - MMJJ_RS00955 0.51 -1.6
185,096 - MMJJ_RS00955 0.52 -0.8
185,097 + MMJJ_RS00955 0.52 -0.2
185,112 - MMJJ_RS00955 0.55 -2.7
185,159 + MMJJ_RS00955 0.64 -3.9
185,182 + MMJJ_RS00955 0.68 -2.1
185,189 - MMJJ_RS00955 0.69 -2.8
185,190 + MMJJ_RS00955 0.69 -0.3
185,190 + MMJJ_RS00955 0.69 -0.4
185,190 + MMJJ_RS00955 0.69 -2.7
185,190 + MMJJ_RS00955 0.69 -2.8
185,261 - MMJJ_RS00955 0.83 -0.6
185,261 - MMJJ_RS00955 0.83 +1.2
185,292 - MMJJ_RS00955 0.88 +1.5
185,293 + MMJJ_RS00955 0.89 -1.6
185,293 + MMJJ_RS00955 0.89 -0.3
185,293 + MMJJ_RS00955 0.89 -1.3
185,293 + MMJJ_RS00955 0.89 +1.8
185,293 + MMJJ_RS00955 0.89 -3.8
185,296 - MMJJ_RS00955 0.89 +0.7
185,297 + MMJJ_RS00955 0.89 +2.1
185,300 + +0.4
185,357 + +0.9
185,462 - -0.3
185,488 - MMJJ_RS00960 0.12 -0.2
185,509 - MMJJ_RS00960 0.15 +3.6
185,509 - MMJJ_RS00960 0.15 +0.0
185,558 - MMJJ_RS00960 0.23 -0.2
185,596 + MMJJ_RS00960 0.29 -1.0
185,599 - MMJJ_RS00960 0.30 +2.2
185,600 + MMJJ_RS00960 0.30 +0.7
185,600 + MMJJ_RS00960 0.30 +2.3
185,639 + MMJJ_RS00960 0.36 +0.1
185,730 + MMJJ_RS00960 0.50 +0.4
185,740 - MMJJ_RS00960 0.52 +2.4
185,742 - MMJJ_RS00960 0.52 +0.4
185,743 + MMJJ_RS00960 0.52 -0.6
185,770 - MMJJ_RS00960 0.56 -2.1
185,837 + MMJJ_RS00960 0.67 +1.0
185,852 - MMJJ_RS00960 0.69 +1.7
185,858 + MMJJ_RS00960 0.70 -0.5
185,896 - MMJJ_RS00960 0.76 +0.4
185,905 - MMJJ_RS00960 0.78 +2.8
185,914 - MMJJ_RS00960 0.79 +3.8
185,937 - MMJJ_RS00960 0.83 +1.4
186,013 - +1.0
186,137 - +2.0
186,148 - -0.4
186,148 - -2.1
186,152 - -2.1
186,159 + +0.3
186,165 + -3.1
186,166 - +0.4
186,167 + +0.2
186,177 + -1.8
186,184 - -1.0
186,189 - +0.3
186,189 - +3.0
186,190 + -2.4
186,194 - -2.4
186,194 - -0.7
186,246 - +2.4
186,246 - -3.3
186,339 - +0.1
186,341 - +1.0
186,387 + -2.2
186,387 + -0.2
186,388 - +2.0
186,389 + +0.1
186,405 + -0.6
186,405 + -1.0
186,415 - -1.3
186,415 - -2.8
186,483 - MMJJ_RS00965 0.23 +1.3
186,511 - MMJJ_RS00965 0.28 +2.9
186,512 + MMJJ_RS00965 0.28 +2.5
186,521 - MMJJ_RS00965 0.30 -0.6
186,521 - MMJJ_RS00965 0.30 +0.4
186,522 + MMJJ_RS00965 0.30 -1.4
186,522 + MMJJ_RS00965 0.30 +0.0
186,522 + MMJJ_RS00965 0.30 +1.0
186,523 - MMJJ_RS00965 0.31 +0.3
186,523 - MMJJ_RS00965 0.31 -1.0
186,548 - MMJJ_RS00965 0.35 +1.1
186,548 - MMJJ_RS00965 0.35 -0.5
186,584 - MMJJ_RS00965 0.42 -1.7
186,606 - MMJJ_RS00965 0.47 -0.6
186,611 + MMJJ_RS00965 0.48 -3.8
186,652 - MMJJ_RS00965 0.56 -0.9
186,674 - MMJJ_RS00965 0.60 -3.4
186,694 - MMJJ_RS00965 0.64 +1.0
186,772 - MMJJ_RS00965 0.79 +3.1
186,785 + MMJJ_RS00965 0.81 +1.8
186,804 - MMJJ_RS00965 0.85 +3.6
186,852 + +1.3
186,863 + -0.1
186,935 - +3.8
186,935 - +2.9
186,935 - +0.2
186,936 + +2.1
186,961 + -3.4
187,002 + +0.0
187,036 - +1.7
187,037 + -0.2
187,037 + -0.4

Or see this region's nucleotide sequence