Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00940 and MMJJ_RS00945 are separated by 139 nucleotides MMJJ_RS00945 and MMJJ_RS00950 are separated by 104 nucleotides MMJJ_RS00950 and MMJJ_RS00955 are separated by 30 nucleotides
MMJJ_RS00940: MMJJ_RS00940 - aldo/keto reductase, at 181,899 to 183,092
_RS00940
MMJJ_RS00945: MMJJ_RS00945 - carboxymuconolactone decarboxylase family protein, at 183,232 to 183,963
_RS00945
MMJJ_RS00950: MMJJ_RS00950 - DUF111 family protein, at 184,068 to 184,787
_RS00950
MMJJ_RS00955: MMJJ_RS00955 - flavodoxin, at 184,818 to 185,353
_RS00955
Position (kb) 183
184 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 182.250 kb on - strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.308 kb on + strand, within MMJJ_RS00940 at 182.308 kb on + strand, within MMJJ_RS00940 at 182.397 kb on - strand, within MMJJ_RS00940 at 182.415 kb on + strand, within MMJJ_RS00940 at 182.521 kb on - strand, within MMJJ_RS00940 at 182.522 kb on + strand, within MMJJ_RS00940 at 182.560 kb on + strand, within MMJJ_RS00940 at 182.563 kb on - strand, within MMJJ_RS00940 at 182.568 kb on + strand, within MMJJ_RS00940 at 182.570 kb on + strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.596 kb on - strand, within MMJJ_RS00940 at 182.664 kb on + strand, within MMJJ_RS00940 at 182.664 kb on + strand, within MMJJ_RS00940 at 182.698 kb on + strand, within MMJJ_RS00940 at 182.736 kb on + strand, within MMJJ_RS00940 at 182.749 kb on + strand, within MMJJ_RS00940 at 182.752 kb on - strand, within MMJJ_RS00940 at 182.762 kb on - strand, within MMJJ_RS00940 at 182.768 kb on - strand, within MMJJ_RS00940 at 182.768 kb on - strand, within MMJJ_RS00940 at 182.769 kb on + strand, within MMJJ_RS00940 at 182.805 kb on + strand, within MMJJ_RS00940 at 182.810 kb on - strand, within MMJJ_RS00940 at 182.826 kb on - strand, within MMJJ_RS00940 at 182.859 kb on + strand, within MMJJ_RS00940 at 183.021 kb on + strand at 183.024 kb on - strand at 183.110 kb on - strand at 183.111 kb on + strand at 183.113 kb on + strand at 183.126 kb on - strand at 183.150 kb on + strand at 183.166 kb on - strand at 183.166 kb on - strand at 183.166 kb on - strand at 183.171 kb on - strand at 183.172 kb on + strand at 183.200 kb on - strand at 183.200 kb on - strand at 183.200 kb on - strand at 183.200 kb on - strand at 183.201 kb on + strand at 183.201 kb on + strand at 183.201 kb on + strand at 183.201 kb on + strand at 183.206 kb on - strand at 183.210 kb on + strand at 183.215 kb on + strand at 183.234 kb on + strand at 183.234 kb on + strand at 183.253 kb on - strand at 183.289 kb on - strand at 183.310 kb on + strand, within MMJJ_RS00945 at 183.322 kb on - strand, within MMJJ_RS00945 at 183.323 kb on + strand, within MMJJ_RS00945 at 183.323 kb on + strand, within MMJJ_RS00945 at 183.325 kb on - strand, within MMJJ_RS00945 at 183.325 kb on - strand, within MMJJ_RS00945 at 183.363 kb on - strand, within MMJJ_RS00945 at 183.364 kb on + strand, within MMJJ_RS00945 at 183.364 kb on + strand, within MMJJ_RS00945 at 183.374 kb on + strand, within MMJJ_RS00945 at 183.407 kb on + strand, within MMJJ_RS00945 at 183.407 kb on + strand, within MMJJ_RS00945 at 183.408 kb on - strand, within MMJJ_RS00945 at 183.408 kb on - strand, within MMJJ_RS00945 at 183.458 kb on - strand, within MMJJ_RS00945 at 183.459 kb on + strand, within MMJJ_RS00945 at 183.459 kb on + strand, within MMJJ_RS00945 at 183.459 kb on + strand, within MMJJ_RS00945 at 183.488 kb on - strand, within MMJJ_RS00945 at 183.488 kb on - strand, within MMJJ_RS00945 at 183.502 kb on - strand, within MMJJ_RS00945 at 183.502 kb on - strand, within MMJJ_RS00945 at 183.502 kb on - strand, within MMJJ_RS00945 at 183.527 kb on - strand, within MMJJ_RS00945 at 183.528 kb on + strand, within MMJJ_RS00945 at 183.589 kb on + strand, within MMJJ_RS00945 at 183.620 kb on + strand, within MMJJ_RS00945 at 183.625 kb on - strand, within MMJJ_RS00945 at 183.631 kb on - strand, within MMJJ_RS00945 at 183.678 kb on + strand, within MMJJ_RS00945 at 183.678 kb on + strand, within MMJJ_RS00945 at 183.698 kb on - strand, within MMJJ_RS00945 at 183.698 kb on - strand, within MMJJ_RS00945 at 183.713 kb on - strand, within MMJJ_RS00945 at 183.713 kb on - strand, within MMJJ_RS00945 at 183.715 kb on - strand, within MMJJ_RS00945 at 183.715 kb on - strand, within MMJJ_RS00945 at 183.715 kb on - strand, within MMJJ_RS00945 at 183.715 kb on - strand, within MMJJ_RS00945 at 183.716 kb on + strand, within MMJJ_RS00945 at 183.716 kb on + strand, within MMJJ_RS00945 at 183.718 kb on - strand, within MMJJ_RS00945 at 183.718 kb on - strand, within MMJJ_RS00945 at 183.719 kb on + strand, within MMJJ_RS00945 at 183.719 kb on + strand, within MMJJ_RS00945 at 183.735 kb on - strand, within MMJJ_RS00945 at 183.735 kb on - strand, within MMJJ_RS00945 at 183.742 kb on - strand, within MMJJ_RS00945 at 183.773 kb on + strand, within MMJJ_RS00945 at 183.777 kb on - strand, within MMJJ_RS00945 at 183.778 kb on + strand, within MMJJ_RS00945 at 183.861 kb on - strand, within MMJJ_RS00945 at 183.862 kb on + strand, within MMJJ_RS00945 at 183.914 kb on + strand at 183.918 kb on - strand at 183.918 kb on - strand at 183.964 kb on + strand at 184.025 kb on - strand at 184.028 kb on - strand at 184.028 kb on - strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.031 kb on + strand at 184.037 kb on - strand at 184.046 kb on + strand at 184.046 kb on + strand at 184.046 kb on + strand at 184.053 kb on + strand at 184.099 kb on + strand at 184.148 kb on - strand, within MMJJ_RS00950 at 184.211 kb on - strand, within MMJJ_RS00950 at 184.358 kb on + strand, within MMJJ_RS00950 at 184.554 kb on - strand, within MMJJ_RS00950 at 184.555 kb on + strand, within MMJJ_RS00950 at 184.556 kb on - strand, within MMJJ_RS00950 at 184.556 kb on - strand, within MMJJ_RS00950 at 184.557 kb on + strand, within MMJJ_RS00950 at 184.557 kb on + strand, within MMJJ_RS00950 at 184.563 kb on - strand, within MMJJ_RS00950 at 184.577 kb on + strand, within MMJJ_RS00950 at 184.743 kb on + strand at 184.775 kb on - strand at 184.830 kb on - strand at 184.935 kb on + strand, within MMJJ_RS00955
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 182,250 - MMJJ_RS00940 0.29 +0.9 182,251 + MMJJ_RS00940 0.29 -0.1 182,251 + MMJJ_RS00940 0.29 -2.1 182,251 + MMJJ_RS00940 0.29 -2.3 182,251 + MMJJ_RS00940 0.29 +1.7 182,251 + MMJJ_RS00940 0.29 +0.0 182,251 + MMJJ_RS00940 0.29 +0.5 182,308 + MMJJ_RS00940 0.34 +2.9 182,308 + MMJJ_RS00940 0.34 +1.3 182,397 - MMJJ_RS00940 0.42 +1.4 182,415 + MMJJ_RS00940 0.43 +0.7 182,521 - MMJJ_RS00940 0.52 -0.6 182,522 + MMJJ_RS00940 0.52 +1.0 182,560 + MMJJ_RS00940 0.55 -1.1 182,563 - MMJJ_RS00940 0.56 +1.1 182,568 + MMJJ_RS00940 0.56 -2.4 182,570 + MMJJ_RS00940 0.56 -0.5 182,574 - MMJJ_RS00940 0.57 -1.8 182,574 - MMJJ_RS00940 0.57 -2.0 182,574 - MMJJ_RS00940 0.57 +3.4 182,574 - MMJJ_RS00940 0.57 +0.0 182,574 - MMJJ_RS00940 0.57 -0.5 182,575 + MMJJ_RS00940 0.57 +0.8 182,575 + MMJJ_RS00940 0.57 +4.7 182,575 + MMJJ_RS00940 0.57 +1.0 182,575 + MMJJ_RS00940 0.57 +0.1 182,575 + MMJJ_RS00940 0.57 -1.4 182,575 + MMJJ_RS00940 0.57 -0.1 182,575 + MMJJ_RS00940 0.57 -2.9 182,596 - MMJJ_RS00940 0.58 +1.8 182,664 + MMJJ_RS00940 0.64 +1.2 182,664 + MMJJ_RS00940 0.64 +0.1 182,698 + MMJJ_RS00940 0.67 -3.7 182,736 + MMJJ_RS00940 0.70 +1.8 182,749 + MMJJ_RS00940 0.71 -3.7 182,752 - MMJJ_RS00940 0.71 -2.4 182,762 - MMJJ_RS00940 0.72 -3.4 182,768 - MMJJ_RS00940 0.73 -1.6 182,768 - MMJJ_RS00940 0.73 -1.1 182,769 + MMJJ_RS00940 0.73 +0.0 182,805 + MMJJ_RS00940 0.76 +2.1 182,810 - MMJJ_RS00940 0.76 -3.7 182,826 - MMJJ_RS00940 0.78 +2.1 182,859 + MMJJ_RS00940 0.80 -1.1 183,021 + +1.9 183,024 - +0.6 183,110 - +1.7 183,111 + -0.6 183,113 + -1.3 183,126 - -1.0 183,150 + -1.0 183,166 - +1.8 183,166 - -2.3 183,166 - +2.5 183,171 - +5.7 183,172 + +1.1 183,200 - -2.8 183,200 - +1.5 183,200 - -1.8 183,200 - -3.4 183,201 + -1.3 183,201 + +0.5 183,201 + -0.5 183,201 + -0.5 183,206 - +1.0 183,210 + +0.3 183,215 + +1.0 183,234 + +1.5 183,234 + -2.3 183,253 - -2.0 183,289 - -2.3 183,310 + MMJJ_RS00945 0.11 -0.4 183,322 - MMJJ_RS00945 0.12 -0.3 183,323 + MMJJ_RS00945 0.12 +3.0 183,323 + MMJJ_RS00945 0.12 -0.6 183,325 - MMJJ_RS00945 0.13 +0.3 183,325 - MMJJ_RS00945 0.13 -1.6 183,363 - MMJJ_RS00945 0.18 -0.0 183,364 + MMJJ_RS00945 0.18 +0.5 183,364 + MMJJ_RS00945 0.18 -2.9 183,374 + MMJJ_RS00945 0.19 +0.8 183,407 + MMJJ_RS00945 0.24 -0.0 183,407 + MMJJ_RS00945 0.24 +4.1 183,408 - MMJJ_RS00945 0.24 -0.9 183,408 - MMJJ_RS00945 0.24 -2.1 183,458 - MMJJ_RS00945 0.31 -1.0 183,459 + MMJJ_RS00945 0.31 +0.9 183,459 + MMJJ_RS00945 0.31 +0.4 183,459 + MMJJ_RS00945 0.31 -3.9 183,488 - MMJJ_RS00945 0.35 -3.3 183,488 - MMJJ_RS00945 0.35 +1.0 183,502 - MMJJ_RS00945 0.37 -1.8 183,502 - MMJJ_RS00945 0.37 -1.0 183,502 - MMJJ_RS00945 0.37 -0.9 183,527 - MMJJ_RS00945 0.40 +0.6 183,528 + MMJJ_RS00945 0.40 +4.1 183,589 + MMJJ_RS00945 0.49 +2.6 183,620 + MMJJ_RS00945 0.53 -2.0 183,625 - MMJJ_RS00945 0.54 +0.5 183,631 - MMJJ_RS00945 0.55 +0.2 183,678 + MMJJ_RS00945 0.61 -1.4 183,678 + MMJJ_RS00945 0.61 -0.7 183,698 - MMJJ_RS00945 0.64 +0.0 183,698 - MMJJ_RS00945 0.64 -2.5 183,713 - MMJJ_RS00945 0.66 -3.6 183,713 - MMJJ_RS00945 0.66 +0.0 183,715 - MMJJ_RS00945 0.66 +0.9 183,715 - MMJJ_RS00945 0.66 -1.6 183,715 - MMJJ_RS00945 0.66 -0.6 183,715 - MMJJ_RS00945 0.66 -1.0 183,716 + MMJJ_RS00945 0.66 +1.2 183,716 + MMJJ_RS00945 0.66 +2.1 183,718 - MMJJ_RS00945 0.66 +1.7 183,718 - MMJJ_RS00945 0.66 -1.3 183,719 + MMJJ_RS00945 0.67 +0.9 183,719 + MMJJ_RS00945 0.67 -0.8 183,735 - MMJJ_RS00945 0.69 -1.6 183,735 - MMJJ_RS00945 0.69 +0.6 183,742 - MMJJ_RS00945 0.70 +3.1 183,773 + MMJJ_RS00945 0.74 +0.4 183,777 - MMJJ_RS00945 0.74 -2.1 183,778 + MMJJ_RS00945 0.75 +0.2 183,861 - MMJJ_RS00945 0.86 -0.6 183,862 + MMJJ_RS00945 0.86 -3.4 183,914 + +0.5 183,918 - +1.4 183,918 - +0.3 183,964 + -0.9 184,025 - -1.4 184,028 - -1.0 184,028 - -0.9 184,029 + -1.2 184,029 + -2.3 184,031 + -1.0 184,037 - +2.2 184,046 + +2.5 184,046 + +1.1 184,046 + -3.2 184,053 + +0.7 184,099 + +2.6 184,148 - MMJJ_RS00950 0.11 +1.2 184,211 - MMJJ_RS00950 0.20 +5.8 184,358 + MMJJ_RS00950 0.40 -1.1 184,554 - MMJJ_RS00950 0.68 +0.5 184,555 + MMJJ_RS00950 0.68 -1.8 184,556 - MMJJ_RS00950 0.68 -0.4 184,556 - MMJJ_RS00950 0.68 +1.3 184,557 + MMJJ_RS00950 0.68 +1.4 184,557 + MMJJ_RS00950 0.68 +0.1 184,563 - MMJJ_RS00950 0.69 -3.2 184,577 + MMJJ_RS00950 0.71 -2.1 184,743 + -2.6 184,775 - +0.6 184,830 - -2.9 184,935 + MMJJ_RS00955 0.22 -1.0
Or see this region's nucleotide sequence