Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00925 and MMJJ_RS00930 are separated by 86 nucleotides MMJJ_RS00930 and MMJJ_RS00935 are separated by 46 nucleotides MMJJ_RS00935 and MMJJ_RS00940 are separated by 11 nucleotides
MMJJ_RS00925: MMJJ_RS00925 - hypothetical protein, at 179,848 to 180,360
_RS00925
MMJJ_RS00930: MMJJ_RS00930 - queuosine precursor transporter, at 180,447 to 181,055
_RS00930
MMJJ_RS00935: MMJJ_RS00935 - nickel pincer cofactor biosynthesis protein LarB, at 181,102 to 181,887
_RS00935
MMJJ_RS00940: MMJJ_RS00940 - aldo/keto reductase, at 181,899 to 183,092
_RS00940
Position (kb) 181
182 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 180.110 kb on + strand, within MMJJ_RS00925 at 180.151 kb on + strand, within MMJJ_RS00925 at 180.177 kb on - strand, within MMJJ_RS00925 at 180.178 kb on + strand, within MMJJ_RS00925 at 180.247 kb on + strand, within MMJJ_RS00925 at 180.273 kb on - strand, within MMJJ_RS00925 at 180.358 kb on - strand at 180.385 kb on - strand at 180.388 kb on - strand at 180.389 kb on + strand at 180.411 kb on - strand at 180.412 kb on + strand at 180.423 kb on - strand at 180.424 kb on + strand at 180.432 kb on - strand at 180.432 kb on - strand at 180.432 kb on - strand at 180.433 kb on + strand at 180.433 kb on + strand at 180.436 kb on - strand at 180.436 kb on - strand at 180.436 kb on - strand at 180.437 kb on + strand at 180.437 kb on + strand at 180.437 kb on + strand at 180.489 kb on - strand at 180.517 kb on - strand, within MMJJ_RS00930 at 180.518 kb on + strand, within MMJJ_RS00930 at 180.585 kb on - strand, within MMJJ_RS00930 at 180.599 kb on - strand, within MMJJ_RS00930 at 180.601 kb on - strand, within MMJJ_RS00930 at 180.604 kb on - strand, within MMJJ_RS00930 at 180.604 kb on - strand, within MMJJ_RS00930 at 180.605 kb on + strand, within MMJJ_RS00930 at 180.605 kb on + strand, within MMJJ_RS00930 at 180.605 kb on + strand, within MMJJ_RS00930 at 180.840 kb on - strand, within MMJJ_RS00930 at 180.859 kb on - strand, within MMJJ_RS00930 at 180.867 kb on + strand, within MMJJ_RS00930 at 180.882 kb on + strand, within MMJJ_RS00930 at 180.890 kb on + strand, within MMJJ_RS00930 at 180.914 kb on + strand, within MMJJ_RS00930 at 180.995 kb on - strand at 181.001 kb on + strand at 181.022 kb on - strand at 181.023 kb on + strand at 181.024 kb on - strand at 181.024 kb on - strand at 181.025 kb on + strand at 181.026 kb on - strand at 181.027 kb on + strand at 181.091 kb on + strand at 181.091 kb on + strand at 181.091 kb on + strand at 181.116 kb on - strand at 181.116 kb on - strand at 181.117 kb on + strand at 181.193 kb on + strand, within MMJJ_RS00935 at 181.202 kb on + strand, within MMJJ_RS00935 at 181.378 kb on - strand, within MMJJ_RS00935 at 181.382 kb on + strand, within MMJJ_RS00935 at 181.430 kb on - strand, within MMJJ_RS00935 at 181.430 kb on - strand, within MMJJ_RS00935 at 181.430 kb on - strand, within MMJJ_RS00935 at 181.430 kb on - strand, within MMJJ_RS00935 at 181.431 kb on + strand, within MMJJ_RS00935 at 181.431 kb on + strand, within MMJJ_RS00935 at 181.431 kb on + strand, within MMJJ_RS00935 at 181.432 kb on - strand, within MMJJ_RS00935 at 181.433 kb on + strand, within MMJJ_RS00935 at 181.433 kb on + strand, within MMJJ_RS00935 at 181.486 kb on - strand, within MMJJ_RS00935 at 181.487 kb on + strand, within MMJJ_RS00935 at 181.495 kb on + strand, within MMJJ_RS00935 at 181.504 kb on + strand, within MMJJ_RS00935 at 181.513 kb on + strand, within MMJJ_RS00935 at 181.516 kb on - strand, within MMJJ_RS00935 at 181.516 kb on - strand, within MMJJ_RS00935 at 181.517 kb on + strand, within MMJJ_RS00935 at 181.525 kb on - strand, within MMJJ_RS00935 at 181.526 kb on + strand, within MMJJ_RS00935 at 181.558 kb on + strand, within MMJJ_RS00935 at 181.609 kb on + strand, within MMJJ_RS00935 at 181.633 kb on + strand, within MMJJ_RS00935 at 181.647 kb on - strand, within MMJJ_RS00935 at 181.647 kb on - strand, within MMJJ_RS00935 at 181.647 kb on - strand, within MMJJ_RS00935 at 181.657 kb on - strand, within MMJJ_RS00935 at 181.780 kb on + strand, within MMJJ_RS00935 at 181.798 kb on - strand, within MMJJ_RS00935 at 181.872 kb on - strand at 181.901 kb on + strand at 181.901 kb on + strand at 181.965 kb on - strand at 181.997 kb on - strand at 182.016 kb on - strand at 182.016 kb on - strand at 182.017 kb on + strand at 182.017 kb on + strand at 182.018 kb on - strand at 182.073 kb on - strand, within MMJJ_RS00940 at 182.073 kb on - strand, within MMJJ_RS00940 at 182.074 kb on + strand, within MMJJ_RS00940 at 182.074 kb on + strand, within MMJJ_RS00940 at 182.074 kb on + strand, within MMJJ_RS00940 at 182.074 kb on + strand, within MMJJ_RS00940 at 182.074 kb on + strand, within MMJJ_RS00940 at 182.075 kb on - strand, within MMJJ_RS00940 at 182.081 kb on - strand, within MMJJ_RS00940 at 182.081 kb on - strand, within MMJJ_RS00940 at 182.082 kb on + strand, within MMJJ_RS00940 at 182.131 kb on + strand, within MMJJ_RS00940 at 182.141 kb on + strand, within MMJJ_RS00940 at 182.141 kb on + strand, within MMJJ_RS00940 at 182.141 kb on + strand, within MMJJ_RS00940 at 182.187 kb on + strand, within MMJJ_RS00940 at 182.205 kb on + strand, within MMJJ_RS00940 at 182.211 kb on + strand, within MMJJ_RS00940 at 182.211 kb on + strand, within MMJJ_RS00940 at 182.231 kb on + strand, within MMJJ_RS00940 at 182.250 kb on - strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.251 kb on + strand, within MMJJ_RS00940 at 182.308 kb on + strand, within MMJJ_RS00940 at 182.308 kb on + strand, within MMJJ_RS00940 at 182.397 kb on - strand, within MMJJ_RS00940 at 182.415 kb on + strand, within MMJJ_RS00940 at 182.521 kb on - strand, within MMJJ_RS00940 at 182.522 kb on + strand, within MMJJ_RS00940 at 182.560 kb on + strand, within MMJJ_RS00940 at 182.563 kb on - strand, within MMJJ_RS00940 at 182.568 kb on + strand, within MMJJ_RS00940 at 182.570 kb on + strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.574 kb on - strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.575 kb on + strand, within MMJJ_RS00940 at 182.596 kb on - strand, within MMJJ_RS00940 at 182.664 kb on + strand, within MMJJ_RS00940 at 182.664 kb on + strand, within MMJJ_RS00940 at 182.698 kb on + strand, within MMJJ_RS00940 at 182.736 kb on + strand, within MMJJ_RS00940 at 182.749 kb on + strand, within MMJJ_RS00940 at 182.752 kb on - strand, within MMJJ_RS00940 at 182.762 kb on - strand, within MMJJ_RS00940 at 182.768 kb on - strand, within MMJJ_RS00940 at 182.768 kb on - strand, within MMJJ_RS00940 at 182.769 kb on + strand, within MMJJ_RS00940 at 182.805 kb on + strand, within MMJJ_RS00940 at 182.810 kb on - strand, within MMJJ_RS00940 at 182.826 kb on - strand, within MMJJ_RS00940 at 182.859 kb on + strand, within MMJJ_RS00940
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 180,110 + MMJJ_RS00925 0.51 +1.3 180,151 + MMJJ_RS00925 0.59 -0.7 180,177 - MMJJ_RS00925 0.64 +0.3 180,178 + MMJJ_RS00925 0.64 -1.3 180,247 + MMJJ_RS00925 0.78 -1.6 180,273 - MMJJ_RS00925 0.83 -2.9 180,358 - +1.4 180,385 - -0.1 180,388 - +1.1 180,389 + -1.3 180,411 - -1.8 180,412 + +2.0 180,423 - -0.8 180,424 + -1.4 180,432 - -1.1 180,432 - +0.8 180,432 - -4.1 180,433 + +2.2 180,433 + -1.8 180,436 - -0.6 180,436 - +3.0 180,436 - +0.9 180,437 + +1.2 180,437 + +0.9 180,437 + +3.5 180,489 - +1.8 180,517 - MMJJ_RS00930 0.11 +5.9 180,518 + MMJJ_RS00930 0.12 +2.4 180,585 - MMJJ_RS00930 0.23 +1.1 180,599 - MMJJ_RS00930 0.25 +0.1 180,601 - MMJJ_RS00930 0.25 +1.9 180,604 - MMJJ_RS00930 0.26 +1.5 180,604 - MMJJ_RS00930 0.26 -2.6 180,605 + MMJJ_RS00930 0.26 +0.3 180,605 + MMJJ_RS00930 0.26 -2.4 180,605 + MMJJ_RS00930 0.26 +1.9 180,840 - MMJJ_RS00930 0.65 -0.7 180,859 - MMJJ_RS00930 0.68 +4.5 180,867 + MMJJ_RS00930 0.69 +0.3 180,882 + MMJJ_RS00930 0.71 -1.7 180,890 + MMJJ_RS00930 0.73 -1.3 180,914 + MMJJ_RS00930 0.77 -0.9 180,995 - -1.8 181,001 + -0.4 181,022 - -0.9 181,023 + -1.6 181,024 - -4.0 181,024 - -0.1 181,025 + -0.6 181,026 - -0.3 181,027 + +0.5 181,091 + -1.2 181,091 + +1.6 181,091 + +1.9 181,116 - +2.8 181,116 - -2.6 181,117 + +0.9 181,193 + MMJJ_RS00935 0.12 -0.6 181,202 + MMJJ_RS00935 0.13 -3.8 181,378 - MMJJ_RS00935 0.35 -3.5 181,382 + MMJJ_RS00935 0.36 -5.3 181,430 - MMJJ_RS00935 0.42 -1.0 181,430 - MMJJ_RS00935 0.42 -3.7 181,430 - MMJJ_RS00935 0.42 -2.1 181,430 - MMJJ_RS00935 0.42 -1.3 181,431 + MMJJ_RS00935 0.42 -1.3 181,431 + MMJJ_RS00935 0.42 -1.9 181,431 + MMJJ_RS00935 0.42 -2.2 181,432 - MMJJ_RS00935 0.42 -2.4 181,433 + MMJJ_RS00935 0.42 -1.8 181,433 + MMJJ_RS00935 0.42 -2.2 181,486 - MMJJ_RS00935 0.49 -1.9 181,487 + MMJJ_RS00935 0.49 -3.9 181,495 + MMJJ_RS00935 0.50 -2.3 181,504 + MMJJ_RS00935 0.51 -2.9 181,513 + MMJJ_RS00935 0.52 -2.8 181,516 - MMJJ_RS00935 0.53 -1.4 181,516 - MMJJ_RS00935 0.53 -2.9 181,517 + MMJJ_RS00935 0.53 -3.8 181,525 - MMJJ_RS00935 0.54 -1.7 181,526 + MMJJ_RS00935 0.54 -3.2 181,558 + MMJJ_RS00935 0.58 -3.6 181,609 + MMJJ_RS00935 0.65 -1.8 181,633 + MMJJ_RS00935 0.68 -2.9 181,647 - MMJJ_RS00935 0.69 -2.4 181,647 - MMJJ_RS00935 0.69 -2.3 181,647 - MMJJ_RS00935 0.69 -2.1 181,657 - MMJJ_RS00935 0.71 -3.3 181,780 + MMJJ_RS00935 0.86 -1.9 181,798 - MMJJ_RS00935 0.89 -3.9 181,872 - -2.6 181,901 + -0.8 181,901 + +4.2 181,965 - +0.9 181,997 - -1.1 182,016 - -0.3 182,016 - -0.8 182,017 + -2.4 182,017 + -0.1 182,018 - -0.6 182,073 - MMJJ_RS00940 0.15 +4.5 182,073 - MMJJ_RS00940 0.15 -2.0 182,074 + MMJJ_RS00940 0.15 -1.3 182,074 + MMJJ_RS00940 0.15 -1.4 182,074 + MMJJ_RS00940 0.15 -0.6 182,074 + MMJJ_RS00940 0.15 +0.8 182,074 + MMJJ_RS00940 0.15 +0.3 182,075 - MMJJ_RS00940 0.15 -1.4 182,081 - MMJJ_RS00940 0.15 +0.1 182,081 - MMJJ_RS00940 0.15 -3.1 182,082 + MMJJ_RS00940 0.15 -2.0 182,131 + MMJJ_RS00940 0.19 -1.8 182,141 + MMJJ_RS00940 0.20 -1.2 182,141 + MMJJ_RS00940 0.20 -2.3 182,141 + MMJJ_RS00940 0.20 -1.4 182,187 + MMJJ_RS00940 0.24 -3.0 182,205 + MMJJ_RS00940 0.26 -2.4 182,211 + MMJJ_RS00940 0.26 -0.7 182,211 + MMJJ_RS00940 0.26 -1.6 182,231 + MMJJ_RS00940 0.28 -2.4 182,250 - MMJJ_RS00940 0.29 +0.9 182,251 + MMJJ_RS00940 0.29 -0.1 182,251 + MMJJ_RS00940 0.29 -2.1 182,251 + MMJJ_RS00940 0.29 -2.3 182,251 + MMJJ_RS00940 0.29 +1.7 182,251 + MMJJ_RS00940 0.29 +0.0 182,251 + MMJJ_RS00940 0.29 +0.5 182,308 + MMJJ_RS00940 0.34 +2.9 182,308 + MMJJ_RS00940 0.34 +1.3 182,397 - MMJJ_RS00940 0.42 +1.4 182,415 + MMJJ_RS00940 0.43 +0.7 182,521 - MMJJ_RS00940 0.52 -0.6 182,522 + MMJJ_RS00940 0.52 +1.0 182,560 + MMJJ_RS00940 0.55 -1.1 182,563 - MMJJ_RS00940 0.56 +1.1 182,568 + MMJJ_RS00940 0.56 -2.4 182,570 + MMJJ_RS00940 0.56 -0.5 182,574 - MMJJ_RS00940 0.57 -1.8 182,574 - MMJJ_RS00940 0.57 -2.0 182,574 - MMJJ_RS00940 0.57 +3.4 182,574 - MMJJ_RS00940 0.57 +0.0 182,574 - MMJJ_RS00940 0.57 -0.5 182,575 + MMJJ_RS00940 0.57 +0.8 182,575 + MMJJ_RS00940 0.57 +4.7 182,575 + MMJJ_RS00940 0.57 +1.0 182,575 + MMJJ_RS00940 0.57 +0.1 182,575 + MMJJ_RS00940 0.57 -1.4 182,575 + MMJJ_RS00940 0.57 -0.1 182,575 + MMJJ_RS00940 0.57 -2.9 182,596 - MMJJ_RS00940 0.58 +1.8 182,664 + MMJJ_RS00940 0.64 +1.2 182,664 + MMJJ_RS00940 0.64 +0.1 182,698 + MMJJ_RS00940 0.67 -3.7 182,736 + MMJJ_RS00940 0.70 +1.8 182,749 + MMJJ_RS00940 0.71 -3.7 182,752 - MMJJ_RS00940 0.71 -2.4 182,762 - MMJJ_RS00940 0.72 -3.4 182,768 - MMJJ_RS00940 0.73 -1.6 182,768 - MMJJ_RS00940 0.73 -1.1 182,769 + MMJJ_RS00940 0.73 +0.0 182,805 + MMJJ_RS00940 0.76 +2.1 182,810 - MMJJ_RS00940 0.76 -3.7 182,826 - MMJJ_RS00940 0.78 +2.1 182,859 + MMJJ_RS00940 0.80 -1.1
Or see this region's nucleotide sequence